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  • Importing owl files

    - by Mikae Combarado
    Hello, I have a problem with importing owl files using owl api in Java. I successfully can import 2 owl files. However, a problem occurs, when I try to import 3 or more owl files that are integrated to each other. E.g. Base.owl -- base ontology Electronics.owl -- electronics ontology which imports Base.owl Telephone.owl -- telephone ontology which imports Base.owl and Electronics.owl When, I just import Base.owl and run Electronics.owl, it works smoothly. The code is given below: File fileBase = new File("filepath/Base.owl"); File fileElectronic = new File("filePath/Electronic.owl"); SimpleIRIMapper iriMapper = new SimpleIRIMapper(IRI.create("url/Base.owl"), IRI.create(fileBase)); OWLOntologyManager manager = OWLManager.createOWLOntologyManager(); manager.addIRIMapper(iriMapper); OWLOntology ont = manager.loadOntologyFromOntologyDocument(fileElectronic); However, when I want to load Telephone.owl, I just create an additional iriMapper and add it to the manager. The additional code is shown with ** : File fileBase = new File("filepath/Base.owl"); File fileElectronic = new File("filePath/Electronic.owl"); **File fileTelephone = new File("filePath/Telephone.owl");** SimpleIRIMapper iriMapper = new SimpleIRIMapper(IRI.create("url/Base.owl"), IRI.create(fileBase)); **SimpleIRIMapper iriMapper2 = new SimpleIRIMapper(IRI.create("url/Electronic.owl"), IRI.create(fileElectronic));** OWLOntologyManager manager = OWLManager.createOWLOntologyManager(); manager.addIRIMapper(iriMapper); **manager.addIRIMapper(iriMapper2);** OWLOntology ont = manager.loadOntologyFromOntologyDocument(**fileTelephone**); The code shown above gives this error : Could not load import: Import(url/Electronic.owl>) Reason: Could not loaded imported ontology: <url/Base.owl> Cause: null It would be really appreciated, if someone gives me a hand... Thanks in advance...

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  • OWL: get Class from an existent Antology

    - by Gabriele
    How can I get an existent Class from an Ontology with owlAPI? This is a fragment of my ontology: ... <owl:Class rdf:ID="StringDocu"> <owl:equivalentClass> <owl:Restriction> <owl:someValuesFrom rdf:resource="http://www.w3.org/2001/XMLSchema#string"/> <owl:onProperty rdf:resource="#hasContent"/> </owl:Restriction> </owl:equivalentClass> <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string" >String Docu</rdfs:label> <rdfs:subClassOf rdf:resource="#Docu"/> <owl:disjointWith rdf:resource="#URIDocu"/> <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string" >This class concerns a docu with the content specified as common text.</rdfs:comment> </owl:Class> ... I start whit this code: String ontologyUri = "http://mysite.com/my_ontology.owl"; OWLOntologyManager manager = OWLManager.createOWLOntologyManager(); OWLOntology ontology = manager.createOntology(IRI.create(ontologyUri)); OWLDataFactory factory = manager.getOWLDataFactory(); and now I want to retrieve the "StringDocu" class. How can I get this?

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  • OWL inferencing question

    - by user439170
    I am using the Jena semantic web framework version 2.6.3. I have code that creates a model with owl inferencing and then adds the following triples: [:bnode-3 rdf:type owl:Restriction] [:bnode-3 owl:onProperty :offspringOf] [:bnode-3 owl:someValuesFrom :Person] [:bnode-3 rdfs:subClassOf :Person] bnode-3 is supposed to be a restriction class which, for example, would contain :joe if :bob is a :Person and the following triple were asserted: [:joe :offspringOf :bob]. Then, since the restriction class is a subclass of Person, :joe would also be a person. And, in fact, this works. Whats confusing to me is that after I assert just the 4 triples at the top of this post, the inferencer creates a blank node which is a Person. In other words, the following triple is now in the model: [_:b0 rdf:type :Person] I don't understand why it would do this. Any help in understanding this would be greatly appreciated. Thanks. Kent.

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  • Problem of reading OWL/XML

    - by Mikae Combarado
    Hello, I have a problem reading OWL/XML files from Java using Jena. I have no problem reading RDF/XML files, but whenever I create a OWL/XML file from Protege and try to read it, Java gives this error below : WARN [main] (RDFDefaultErrorHandler.java:36) Exception in thread "main" java.lang.NullPointerException at com.hp.hpl.jena.rdf.arp.impl.XMLHandler.endElement(XMLHandler.java:143) The code that I use to retrieve RDF/XML is below : OntModel ontModel = ModelFactory.createOntologyModel(); InputStream in = FileManager.get().open(inputFileName); if (in == null) { throw new IllegalArgumentException( "File: " + inputFileName + " not found"); } ontModel.read(in, ""); This code works with RDF/XML perfectly. However, I cannot read an OWL/XML. I looked at Internet and I couldn't find anything. I would really appreciate, if someone shows me a way. Many thanks

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  • Error when compiling code with the Protege API

    - by Anto
    I am new to Protege API and I have just created on Eclipse a small application which uses an external OWL file. Also I did import all the necessary libraries. import java.util.Collection; import java.util.Iterator; import edu.stanford.smi.protege.exception.OntologyLoadException; import edu.stanford.smi.protegex.owl.ProtegeOWL; import edu.stanford.smi.protegex.owl.model.*; public class Trial { public static void main(String[] args) throws OntologyLoadException{ String uri = "C:/Documents and Settings/Anto/Desktop/travel.owl"; OWLModel owlModel = ProtegeOWL.createJenaOWLModelFromURI(uri); Collection classes = owlModel.getUserDefinedOWLNamedClasses(); for(Iterator it = classes.iterator(); it.hasNext();){ OWLNamedClass cls = (OWLNamedClass) it.next(); Collection instances = cls.getInstances(false); System.out.println("Class " + cls.getBrowserText()+ " (" + instances.size()+")"); for(Iterator jt = instances.iterator(); jt.hasNext();){ OWLIndividual individual = (OWLIndividual) jt.next(); System.out.println(" - "+ individual.getBrowserText()); } } } } When I do compile however I get the following errors: WARNING: [Local Folder Repository] The specified file must be a directory. (C:\Documents and Settings\Anto\My Documents\Eclipse Workspace\ProtegeTrial\plugins\edu.stanford.smi.protegex.owl) LocalFolderRepository.update() SEVERE: Exception caught -- java.net.URISyntaxException: Illegal character in path at index 12: C:/Documents and Settings/CiuffreA/Desktop/travel.owl at java.net.URI$Parser.fail(URI.java:2809) at java.net.URI$Parser.checkChars(URI.java:2982) at java.net.URI$Parser.parseHierarchical(URI.java:3066) at java.net.URI$Parser.parse(URI.java:3014) at java.net.URI.<init>(URI.java:578) at edu.stanford.smi.protegex.owl.jena.JenaKnowledgeBaseFactory.getFileURI(Unknown Source) at edu.stanford.smi.protegex.owl.jena.JenaKnowledgeBaseFactory.loadKnowledgeBase(Unknown Source) at edu.stanford.smi.protege.model.Project.loadDomainKB(Unknown Source) at edu.stanford.smi.protege.model.Project.createDomainKnowledgeBase(Unknown Source) at edu.stanford.smi.protegex.owl.jena.creator.OwlProjectFromUriCreator.create(Unknown Source) at edu.stanford.smi.protegex.owl.ProtegeOWL.createJenaOWLModelFromURI(Unknown Source) at Trial.main(Trial.java:14) Exception in thread "main" java.lang.NullPointerException at edu.stanford.smi.protegex.owl.jena.JenaKnowledgeBaseFactory.loadKnowledgeBase(Unknown Source) at edu.stanford.smi.protege.model.Project.loadDomainKB(Unknown Source) at edu.stanford.smi.protege.model.Project.createDomainKnowledgeBase(Unknown Source) at edu.stanford.smi.protegex.owl.jena.creator.OwlProjectFromUriCreator.create(Unknown Source) at edu.stanford.smi.protegex.owl.ProtegeOWL.createJenaOWLModelFromURI(Unknown Source) at Trial.main(Trial.java:14) Does anyone have an idea on where the problem should be?

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  • how to create Java Application and query about OWL using SPARQL/Jena and how to do it on local/remot

    - by user323889
    I want to create simple application using Java Jena and SPARQL ,that insert, delete , update and query the OWL/RDF data I worked on protege to create the ontology and noticed SPARQL in it but I want to use SPARQL using java and jena ... 1) I saw this thread and I knew how to use SPARQL with jena (after http)stackoverflow.com/questions/2267333/using-jena-to-create-a-sparql-query-on-dbpedia it did work with me .. but I want my own ontology to work .. I mean to upload it to server or to work on localhost or whatever ... 2) SPARQL doesn't support operations like update or insert .. but querying is there any other languages/methods that support these operations ? or I should created it manually in java in each application ... 3) how can I upload my ontology and I prefer something related to protege ? because I tried this which got bug : (after http )semweb.krasu.ru/protege2joseki/ and this (which gave me lot of issues) (after http and wwwdot)joseki.org/ nothing work .. 4) RDF-store ... is for just RDF ? because I am working on OWL files .. I mean for example using MySQL as RDF-store .. would it work for OWL concept ?

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  • Is there any killer application for Ontology/semantics/OWL/RDF yet?

    - by narnirajesh
    Hi Guys, I got interested in semantic technologies after reading a lot of books, blogs and articles on the net saying that it would make data machine-understandable, allow intelligent agents make great reasoning, automated & dynamic service composition etc.. I am still reading the same stuff from 2 years. The number of articles/blogs/semantic-conferences have increased considerably. But I am still unable to see any killer-application. Why is it so? Or is there some application/product (commercial/open-source) already existing, which actually is doing all that being boasted of? To put it more precisely, is there any product that leverages semantic technologies (esp RDF/OWL/SPARQL) and is delivering functionality/performance/maintainability, which would not have been possible with the existing (no-semantic) technologies? Some product that is completely dependent on semantic technologies and really adds value to the customers and generating revenues?

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  • Semantic stuff (RDF, OWL) on mobile phones - is it possible?

    - by Brian Schimmel
    I'm thinking about using semantic (web) technogies like RDF and OWL in an application on mobile devices. Currently I'm targeting android, but I'd also be interested in the possibilities on the iPhone and on J2ME. I would like to use a lib instead of implementing everything from scratch. I know that there are some libraries and frameworks like Jena, Redland, Protégé but they don't state on which platforms they are known to work. Having a dynamic object model and parsing from and to XML are must-haves for me. I'd also like to use reasoning, but I've been told it was rather computing-intensive, so that's only a nice-to-have. For all platforms mentioned, the question can be interpreted as Is it possible in theory (especially for J2ME I'm not sure) Are there libs that are known to work on those platforms? Is the performance on a mobile platform good enough for real world usage?

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  • how to access owl file inside jsp

    - by Udayanga
    hi, I'm trying to access owl file using jsp.I've successfully load the owl file and quering that using SPARQL.But still I couldn't success with JSP. I'm always getting error "java.lang.ClassNotFoundException: com.hp.hpl.jena.util.FileManager " help me! Thank in advance!

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  • Inferring using Jena

    - by Mikae Combarado
    InfModel infmodel = ModelFactory.createInfModel(reasoner, m); Resource vegetarian = infmodel.getResource(source + "Vegetarian"); Resource margherita = infmodel.getResource(source + "Example-Margherita"); if (infmodel.contains(margherita, RDF., vegetarian)) { System.out.println("Margherita is a memberOf Vegetarian pizza"); } The example given above is formed by formal pizza.owl. In this owl, Example-Margherita is an individual of Margherita class. So, it is already written in owl file. However, the problem is that the reasoner should infer that margherita-example should be also an vegetarian pizza. Could anyone please give an example that shows how to find an individual's possible inferred classes like in Protege ?(Protege correctly infers that Example-Margherita is a Vegetarian Pizza. However, I can't infer programmatically)

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  • Ontologies in .NET

    - by Lily
    I need to make use of some OWL ontologies in c#. Does anyone have a suggestion where I can start? Or if there are any libraries available for .NET please?

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  • Ontologies in c#

    - by Lily
    Hi, I need to make use of some OWL ontologies in c#. Does anyone have a suggestion where I can start? Or if there are any libraries available for c# please? Thanks!

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  • Problem in inferring instances that have integer cardinality constraint

    - by Mikae Combarado
    Hello, I have created an RDF/OWL file using Protege 4.1 alpha. I also created a defined class in Protege called CheapPhone. This class has a restriction which is shown below : (hasPrice some integer[< 350]) Whenever, a price of a phone is below 350, it is inferred as CheapPhone. There is no problem for inferring this in Protege 4.1 alpha. However, I cannot infer this using Jena. I also created a defined class called SmartPhone. This class also has a restriction which is shown below : (has3G value true) and (hasInternet value true) Whenever, a phone has 3G and Internet, it is inferred as SmartPhone. In this situation, there is no problem inferring this in both Protege and Jena. I have started to think that there is a problem in default inference engine of Jena. The code that I use in Java is below : Reasoner reasoner = ReasonerRegistry.getOWLReasoner(); reasoner = reasoner.bindSchema(ontModel); OntModelSpec ontModelSpec = OntModelSpec.OWL_MEM_MINI_RULE_INF; ontModelSpec.setReasoner(reasoner); // Create ontology model with reasoner support // ontModel was created and read before, so I don't share the code in order // not to create garbage here OntModel model = ModelFactory.createOntologyModel(ontModelSpec, ontModel); OntClass sPhone = model.getOntClass(ns + "SmartPhone"); ExtendedIterator s = sPhone.listInstances(); while(s.hasNext()) { OntResource mp = (OntResource)s.next(); System.out.println(mp.getURI()); } This code works perfectly and returns me the instances, but when I change the code below and make it appropriate for CheapPhone, it doesn't return anything. OntClass sPhone = model.getOntClass(ns + "CheapPhone"); Am I doing something wrong ?

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  • How to use DL Query programmatically

    - by Mikae Combarado
    Hello, I would like to know whether I can use DL Query in Protege programatically. Is it possible to enter a query in java and retrieve individuals like how it is done in SQL ? E.g. Query : hasCalorificContentValue value 723 and I would like to retrieve an individual called QuattroFormaggio.

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  • What are the Jena methods used to access an ontology?

    - by amoosh
    Hello I'm new to ontologies, my assignment is to create an ontology using Protege V4.0.2, (which I've done) and to create a website over that ontology(which I'm working on), i just need the basics on how to search the ontology using the Jena library I dont have any specifics because i haven't yet started. but i'm in a time crunch, and i need to now exactly how i'm goning to do it

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  • What is the difference between "someValuesFrom" and "allValuesFrom"?

    - by ahmed
    In descriptive logic, what is the difference between "someValuesFrom" and "allValuesFrom"? In other words, the difference between (limited existential quantification) and (value restriction). For example, consider this picture: I have used the photoshop because I can't write some symbols. Is there any way to simplify the concept of somevaluefrom and allvaluesfrom?

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  • RDF and OWL: Have these delivered the promises of the Semantic Web?

    - by Dark Templar
    These days I've been learning a lot about how different scientific fields are trying to move their data over to the Semantic Web in order to "free up data from being stored in isolated silos". I read a lot about how these fields are saying how their efforts are implementing the "visions" of the Semantic Web. As a learner (and from purely a learning perspective) I was curious to know why, if semantic technology is deemed to be so powerful, the efforts have been around for years but myself and a lot of people I know have never even heard of it until very recently? Also, I don't come across any scholarly articles deeming "oh, our inferencing engine was able to make such and such discovery, which is helping us pave our way to solving...." etc. It seems that there are genuine efforts across different institutions, fields, and disciplines to shift all their data to a "semantic" format, but what happens after all that's been done? All the ontologies have been created/unified, and then what?

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  • Jena Effects of Different Entailment Regimes

    - by blueomega
    I am trying sparql and the use of entailment. As a example i used http://www.w3.org/TR/2010/WD-sparql11-entailment-20100126/#t112 i try to put them in jena. OntClass book1= model.createClass(NS+"book1"); OntClass book2=model.createClass(NS+"book2"); OntClass book3=model.createClass(NS+"book3"); OntClass publication=model.createClass(NS+"publication"); OntClass article=model.createClass(NS+"article"); OntClass mit=model.createClass(NS+"MIT"); ObjectProperty a = model.createObjectProperty(NS+"a"); ObjectProperty publishes = model.createObjectProperty(NS+"publishes"); book1.addProperty(a, publication); book2.addProperty(a, article); publication.addSubClass(article); publishes.addRange(publication); mit.addProperty(publishes, book3); where model is type OntModel. and i used the query similar to the problem "PREFIX table: "I have correct namespace here"+ "SELECT *"+ "WHERE"+ "{"+ " ?x ?y table:publication ."+ "}"; The model was created like this. Hope OntModelSpec is ok. OntModel m = ModelFactory.createOntologyModel(OntModelSpec.OWL_MEM_RDFS_INF, null); i get as results from query x y | http://www.example.com/ontologies/sample.owl#publishes | rdfs:range | | http://www.example.com/ontologies/sample.owl#article | rdfs:subClassOf | | http://www.example.com/ontologies/sample.owl#book1 | http://www.example.com/ontologies/sample.owl#a | | http://www.example.com/ontologies/sample.owl#publication | rdfs:subClassOf | | http://www.example.com/ontologies/sample.owl#book3 | rdf:type | Can anyone give me a example, with and without entailment, so a cant try code, can get the results right.

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  • How to Query Individuals using OWL DL Query in Protege 4?

    - by Hala
    Hello, How do I qery individulas in my ontology, here is a description of what I would like to do (similar to SQL queries): I have three classes (components, features, and polarity). The polarity value can be positive_polarity or negative_polarity, both are subclasses of polarity. a_component hasFeature a_Feature a_Feautre hasPolarity a_Polarity I would like to list all components which have a positive_polarity value. How can this be achieved using the DL Query tab in protege 4? Thanks for your help in advance, Hala

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