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  • Parallel prologue and epilogue in Grid Engine

    - by ajdecon
    We have a cluster being used to run MPI jobs for a customer. Previously this cluster used Torque as the scheduler, but we are transitioning to Grid Engine 6.2u5 (for some other features). Unfortunately, we are having trouble duplicating some of our maintenance scripts in the Grid Engine environment. In Torque, we have a prologue.parallel script which is used to carry out an automated health-check on the node. If this script returns a fail condition, Torque will helpfully offline the node and re-queue the job to use a different group of nodes. In Grid Engine, however, the queue "prolog" only runs on the head node of the job. We can manually run our prologue script from the startmpi.sh initialization script, for the mpi parallel environment; but I can't figure out how to detect a fail condition and carry out the same "mark offline and requeue" procedure. Any suggestions?

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  • OSX: Selecting default application for all unknown and different file types (extensions)

    - by Leo
    I work in cluster computing and am using Mac OS X 10.6. I send off hundreds of computing jobs a day, and each one comes back with with a different extension. For example, svmGeneSelect.o12345 which is the std output of my svmGeneSelect job which is job number 12345. I don't control the extensions. All files are plain text. I want OSX to open any file extension that it hasn't seen before with my favorite text editor when I click on it. Or even better set up file association defaults for extension patterns ie textEdit for extensions matching *.o*. I do NOT want to create file associations for individual files since this extension will only ever exist once, and I do not want to go through the process of selecting the application to use for each file. Thanks for any help you can offer.

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  • On Windows, what filename extensions denote an executable?

    - by Ken
    On Windows, *.exe, *.bat, *.cmd, and *.com all represent programs or shell scripts that can be run, simply by double-clicking them. Are there any other filename extensions that indicate a file is executable? EDIT: When I jump into a new project (or back into an old project!), one of the common things I want to do when looking around is to find out what tools there are. On Unix (which I've used for decades), there's an execute bit, so this is as simple as: find . -executable -type f I figured that on Windows, which seems to have a much more complex mechanism for "is this executable (and how do I execute it)", there would be a relatively small number of file name extensions which would serve roughly the same purpose. For my current project, *.exe *.bat *.cmd is almost certainly sufficient, but I figured I'd ask if there was an authoritative list.

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  • Script to set "Hide file extensions"

    - by Ickster
    I'm tired of the multi-step process to set my preferred folder options on every server to which I log on (Mostly Win2008, but also some 2012 and Win7 here and there). I'd love to be able to script the process, but unfortunately, I can't find any commands or extensions to do so for folder options. There are several settings I'd like to change, but in particular, I'd like to set "Hide file extensions for known file types" to false. I figure that if I can do that, I'll be able to manage any additional settings on my own. Methods that work on the vanilla command line would be preferred, but if there are commands in PowerShell, I'll use that.

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  • Custom file extensions as ASP.NET in IIS?

    - by CJLeeds
    I have Apache 2.2, and it's got modaspdotnet installed - the 2.2 version. I followed the advice at Configuring ASP.NET MVC2 on Apache 2.2 using mod_aspdotnet, and the server works basically very well. However, I'm trying to create custom extensions (e.g. file.customname, instead of file.aspx), similar to how Apache/PHP/htaccess can handle this. (I think it's mod_rewrite or .htaccess, forgotten which now!) What would I do to get these custom file types (all serving .NET files) working? The extensions are given custom names by me, simply for testing purposes This is a tourism site [a testing one, btw], and it's working OK on localhost for basic pages, but I wanted to know how to do this. How would I go about this? I've had a look on Google etc. but custom HTTP handlers was all I could really find! Thanks

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  • Why doesn't interface inheritance work when writing shell extensions in c#?

    - by Factor Mystic
    According to this article about writing shell extensions in .Net, inheriting the shell interfaces as you might naturally do when writing code doesn't work. I've observed this in my own code as well. Doesn't work: public interface IPersist { // stuff specific only to IPersist } public interface IPersistFolder : IPersist { // stuff specific only to IPersistFolder } Does work: public interface IPersistFolder { // stuff specific to IPersist only // stuff specific to IPersistFolder only } The article notes this fact: Lo and behold, it worked! Notice that I've abandoned any idea that IPersistFolder is inherited from anything at all and just included the stubs from IPersist right in its definition. In all candor, I can't tell you why this is but it definitely works just fine and shouldn't give you any problems. So my I'll ask the question this guy didn't know; why didn't the original code work?

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  • Using Parallel Extensions with ThreadStatic attribute. Could it leak memory?

    - by the-locster
    I'm using Parallel Extensions fairly heavily and I've just now encountered a case where using thread locla storrage might be sensible to allow re-use of objects by worker threads. As such I was lookign at the ThreadStatic attribute which marks a static field/variable as having a unique value per thread. It seems to me that it would be unwise to use PE with the ThreadStatic attribute without any guarantee of thread re-use by PE. That is, if threads are created and destroyed to some degree would the variables (and thus objects they point to) remain in thread local storage for some indeterminate amount of time, thus causing a memory leak? Or perhaps the thread storage is tied to the threads and disposed of when the threads are disposed? But then you still potentially have threads in a pool that are longed lived and that accumulate thread local storage from various pieces of code the threads are used for. Is there a better approach to obtaining thread local storage with PE? Thankyou.

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  • How does Task Parallel Library scale on a terminal server or in a web application?

    - by Lasse V. Karlsen
    I understand that the TPL uses work-stealing queues for its tasks when I execute things like Parallel.For and similar constructs. If I understand this correctly, the construct will spin up a number of tasks, where each will start processing items. If one of the tasks complete their allotted items, it will start stealing items from the other tasks which hasn't yet completed theirs. This solves the problem where items 1-100 are cheap to process and items 101-200 are costly, and one of the two tasks would just sit idle until the other completed. (I know this is a simplified exaplanation.) However, how will this scale on a terminal server or in a web application (assuming we use TPL in code that would run in the web app)? Can we risk saturating the CPUs with tasks just because there are N instances of our application running side by side? Is there any information on this topic that I should read? I've yet to find anything in particular, but that doesn't mean there is none.

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  • how to generate uncorrelated random numbers in repeated calls in parallel?

    - by user1446948
    I want to write a function which will be repeatedly called by other functions many times. Inside this function it is supposed to generate a lot of random numbers and this part will be treated in parallel. If only for one run, the seed can be chosen differently for each thread, so that the random numbers will be uncorrelated. However, if this function will be called the 2nd time, it seems that the random numbers will repeat unless the seed will be again changed during the later calls. So my question is, is there a good way to generate the random numbers or reset the seed so that the random numbers generated by repeated calls to this function and also by different threads are really random? Thank you.

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  • Trouble installing gnome-shell-extensions-user-theme, dependency/PPA conflict?

    - by Drex
    I installed gnome tweak tool, and am trying to set up custom themes and whatnot. So, trying to install gnome-shell-extensions-user-theme. me@computer:~$ sudo apt-get install gnome-shell-extensions-user-theme [sudo] password for me: Reading package lists... Done Building dependency tree Reading state information... Done Some packages could not be installed. This may mean that you have requested an impossible situation or if you are using the unstable distribution that some required packages have not yet been created or been moved out of Incoming. The following information may help to resolve the situation: The following packages have unmet dependencies: gnome-shell-extensions-user-theme : Depends: gnome-shell-extensions-common but it is not going to be installed E: Unable to correct problems, you have held broken packages. Not going to be installed? Okay, let's see about that... me@computer:~$ sudo apt-get install gnome-shell-extensions-common Reading package lists... Done Building dependency tree Reading state information... Done gnome-shell-extensions-common is already the newest version. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Wait, what? Broken packages? Ruh Roh! Seems to me it might be a PPA contradiction problem or something, but I'm tired of trashing my installs. Kinda lost here. Any ideas? Output of sudo apt-get install -f drex@U110:~$ sudo apt-get install -f Reading package lists... Done Building dependency tree Reading state information... Done 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.

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  • Limiting DOPs &ndash; Who rules over whom?

    - by jean-pierre.dijcks
    I've gotten a couple of questions from Dan Morgan and figured I start to answer them in this way. While Dan is running on a big system he is running with Database Resource Manager and he is trying to make sure the system doesn't go crazy (remember end user are never, ever crazy!) on very high DOPs. Q: How do I control statements with very high DOPs driven from user hints in queries? A: The best way to do this is to work with DBRM and impose limits on consumer groups. The Max DOP setting you can set in DBRM allows you to overwrite the hint. Now let's go into some more detail here. Assume my object (and for simplicity we assume there is a single object - and do remember that we always pick the highest DOP when in doubt and when conflicting DOPs are available in a query) has PARALLEL 64 as its setting. Assume that the query that selects something cool from that table lives in a consumer group with a max DOP of 32. Assume no goofy things (like running out of parallel_max_servers) are happening. A query selecting from this table will run at DOP 32 because DBRM caps the DOP. As of 11.2.0.1 we also use the DBRM cap to create the original plan (at compile time) and not just enforce the cap at runtime. Now, my user is smart and writes a query with a parallel hint requesting DOP 128. This query is still capped by DBRM and DBRM overrules the hint in the statement. The statement, despite the hint, runs at DOP 32. Note that in the hinted scenario we do compile the statement with DOP 128 (the optimizer obeys the hint). This is another reason to use table decoration rather than hints. Q: What happens if I set parallel_max_servers higher than processes (e.g. the max number of processes allowed to run on my machine)? A: Processes rules. It is important to understand that processes are fixed at startup time. If you increase parallel_max_servers above the number of processes in the processes parameter you should get a warning in the alert log stating it can not take effect. As a follow up, a hinted query requesting more parallel processes than either parallel_max_servers or processes will not be able to acquire the requested number. Parallel_max_processes will prevent this. And since parallel_max_servers should be lower than max processes you can never go over either...

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  • Why is PLINQ slower than LINQ for this code?

    - by Rob Packwood
    First off, I am running this on a dual core 2.66Ghz processor machine. I am not sure if I have the .AsParallel() call in the correct spot. I tried it directly on the range variable too and that was still slower. I don't understand why... Here are my results: Process non-parallel 1000 took 146 milliseconds Process parallel 1000 took 156 milliseconds Process non-parallel 5000 took 5187 milliseconds Process parallel 5000 took 5300 milliseconds using System; using System.Collections.Generic; using System.Diagnostics; using System.Linq; namespace DemoConsoleApp { internal class Program { private static void Main() { ReportOnTimedProcess( () => GetIntegerCombinations(), "non-parallel 1000"); ReportOnTimedProcess( () => GetIntegerCombinations(runAsParallel: true), "parallel 1000"); ReportOnTimedProcess( () => GetIntegerCombinations(5000), "non-parallel 5000"); ReportOnTimedProcess( () => GetIntegerCombinations(5000, true), "parallel 5000"); Console.Read(); } private static List<Tuple<int, int>> GetIntegerCombinations( int iterationCount = 1000, bool runAsParallel = false) { IEnumerable<int> range = Enumerable.Range(1, iterationCount); IEnumerable<Tuple<int, int>> integerCombinations = from x in range from y in range select new Tuple<int, int>(x, y); return runAsParallel ? integerCombinations.AsParallel().ToList() : integerCombinations.ToList(); } private static void ReportOnTimedProcess( Action process, string processName) { var stopwatch = new Stopwatch(); stopwatch.Start(); process(); stopwatch.Stop(); Console.WriteLine("Process {0} took {1} milliseconds", processName, stopwatch.ElapsedMilliseconds); } } }

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  • How to perform a Depth First Search iteratively using async/parallel processing?

    - by Prabhu
    Here is a method that does a DFS search and returns a list of all items given a top level item id. How could I modify this to take advantage of parallel processing? Currently, the call to get the sub items is made one by one for each item in the stack. It would be nice if I could get the sub items for multiple items in the stack at the same time, and populate my return list faster. How could I do this (either using async/await or TPL, or anything else) in a thread safe manner? private async Task<IList<Item>> GetItemsAsync(string topItemId) { var items = new List<Item>(); var topItem = await GetItemAsync(topItemId); Stack<Item> stack = new Stack<Item>(); stack.Push(topItem); while (stack.Count > 0) { var item = stack.Pop(); items.Add(item); var subItems = await GetSubItemsAsync(item.SubId); foreach (var subItem in subItems) { stack.Push(subItem); } } return items; } EDIT: I was thinking of something along these lines, but it's not coming together: var tasks = stack.Select(async item => { items.Add(item); var subItems = await GetSubItemsAsync(item.SubId); foreach (var subItem in subItems) { stack.Push(subItem); } }).ToList(); if (tasks.Any()) await Task.WhenAll(tasks); UPDATE: If I wanted to chunk the tasks, would something like this work? foreach (var batch in items.BatchesOf(100)) { var tasks = batch.Select(async item => { await DoSomething(item); }).ToList(); if (tasks.Any()) { await Task.WhenAll(tasks); } } The language I'm using is C#.

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  • Distributed and/or Parallel SSIS processing

    - by Jeff
    Background: Our company hosts SaaS DSS applications, where clients provide us data Daily and/or Weekly, which we process & merge into their existing database. During business hours, load in the servers are pretty minimal as it's mostly users running simple pre-defined queries via the website, or running drill-through reports that mostly hit the SSAS OLAP cube. I manage the IT Operations Team, and so far this has presented an interesting "scaling" issue for us. For our daily-refreshed clients, the server is only "busy" for about 4-6 hrs at night. For our weekly-refresh clients, the server is only "busy" for maybe 8-10 hrs per week! We've done our best to use some simple methods of distributing the load by spreading the daily clients evenly among the servers such that we're not trying to process daily clients back-to-back over night. But long-term this scaling strategy creates two notable issues. First, it's going to consume a pretty immense amount of hardware that sits idle for large periods of time. Second, it takes significant Production Support over-head to basically "schedule" the ETL such that they don't over-lap, and move clients/schedules around if they out-grow the resources on a particular server or allocated time-slot. As the title would imply, one option we've tried is running multiple SSIS packages in parallel, but in most cases this has yielded VERY inconsistent results. The most common failures are DTExec, SQL, and SSAS fighting for physical memory and throwing out-of-memory errors, and ETLs running 3,4,5x longer than expected. So from my practical experience thus far, it seems like running multiple ETL packages on the same hardware isn't a good idea, but I can't be the first person that doesn't want to scale multiple ETLs around manual scheduling, and sequential processing. One option we've considered is virtualizing the servers, which obviously doesn't give you any additional resources, but moves the resource contention onto the hypervisor, which (from my experience) seems to manage simultaneous CPU/RAM/Disk I/O a little more gracefully than letting DTExec, SQL, and SSAS battle it out within Windows. Question to the forum: So my question to the forum is, are we missing something obvious here? Are there tools out there that can help manage running multiple SSIS packages on the same hardware? Would it be more "efficient" in terms of parallel execution if instead of running DTExec, SQL, and SSAS same machine (with every machine running that configuration), we run in pairs of three machines with SSIS running on one machine, SQL on another, and SSAS on a third? Obviously that would only make sense if we could process more than the three ETL we were able to process on the machine independently. Another option we've considered is completely re-architecting our SSIS package to have one "master" package for all clients that attempts to intelligently chose a server based off how "busy" it already is in terms of CPU/Memory/Disk utilization, but that would be a herculean effort, and seems like we're trying to reinvent something that you would think someone would sell (although I haven't had any luck finding it). So in summary, are we missing an obvious solution for this, and does anyone know if any tools (for free or for purchase, doesn't matter) that facilitate running multiple SSIS ETL packages in parallel and on multiple servers? (What I would call a "queue & node based" system, but that's not an official term). Ultimately VMWare's Distributed Resource Scheduler addresses this as you simply run a consistent number of clients per VM that you know will never conflict scheduleing-wise, then leave it up to VMWare to move the VMs around to balance out hardware usage. I'm definitely not against using VMWare to do this, but since we're a 100% Microsoft app stack, it seems like -someone- out there would have solved this problem at the application layer instead of the hypervisor layer by checking on resource utilization at the OS, SQL, SSAS levels. I'm open to ANY discussion on this, and remember no suggestion is too crazy or radical! :-) Right now, VMWare is the only option we've found to get away from "manually" balancing our resources, so any suggestions that leave us on a pure Microsoft stack would be great. Thanks guys, Jeff

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  • Parallel shell loops

    - by brubelsabs
    Hi, I want to process many files and since I've here a bunch of cores I want to do it in parallel: for i in *.myfiles; do do_something $i `derived_params $i` other_params; done I know of a Makefile solution but my commands needs the arguments out of the shell globbing list. What I found is: > function pwait() { > while [ $(jobs -p | wc -l) -ge $1 ]; do > sleep 1 > done > } > To use it, all one has to do is put & after the jobs and a pwait call, the parameter gives the number of parallel processes: > for i in *; do > do_something $i & > pwait 10 > done But this doesn't work very well, e.g. I tried it with e.g. a for loop converting many files but giving me error and left jobs undone. I can't belive that this isn't done yet since the discussion on zsh mailing list is so old by now. So do you know any better?

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  • Installing multiple php versions plus extensions on freebsd

    - by jgtumusiime
    I'm a currently learning how to work with freebsd. Lately I have been trying to run multiple php versions along with their respective packages. However, I seem to be running into issues while making installations. The default location for my php installation is /usr/local/etc/, however I want to be able to install php5.2, php5.3 and php5.4 in /usr/local/etc/php52, /usr/local/etc/php53 and /usr/local/etc/php54 respectively. Using ports I simply achieved this by doing cd /usr/ports/lang/php5x && make PREFIX="/usr/local/etc/php5x" install clean. The problem now is: How do I do the same for extensions of all my PHP versions? When I try installing php-extensions like so: cd /usr/ports/lang/php5x-extension && make PREFIX="/usr/local/etc/php5x/lib/php" install clean, I get this error ... ===> PHPizing for php53-bcmath-5.3.17 env: /usr/local/bin/phpize: No such file or directory *** Error code 127 Stop in /usr/ports/math/php53-bcmath. *** Error code 1 Stop in /usr/ports/lang/php53-extensions. My PHPize is located in /usr/local/etc/php5x/bin/phpize So how do I get make or whatever to look for phpize in the right path? Is there a cleaner, may be simpler way of maintaining multiple php installations? I need to achieve this because of compatibility issues from some legacy code that runs on 5.2 and breaks on 5.3. Thank you. ================= So I successfully installed an configured freebsd jail and I would like to install software within my jail but I cannot connect to the network. Here is my rc.conf jail_enable="YES" # Set to NO to disable starting of any jails jail_list="mambo2" # Space separated list of names of jails jail_mambo2_rootdir="/usr/jails/j01" # jail's root directory jail_mambo2_hostname="mambo2.ug" # jail's hostname jail_mambo2_ip="192.168.100.174" # jail's IP address jail_mambo2_devfs_enable="YES" # mount devfs in the jail jail_mambo2_devfs_ruleset="mambo2_ruleset" # devfs ruleset to apply to jail here is my jail ifconfig output mambo2# ifconfig rl0: flags=8843<UP,BROADCAST,RUNNING,SIMPLEX,MULTICAST> metric 0 mtu 1500 options=8<VLAN_MTU> ether 00:c1:28:00:48:db media: Ethernet autoselect (100baseTX <full-duplex>) status: active plip0: flags=108810<POINTOPOINT,SIMPLEX,MULTICAST,NEEDSGIANT> metric 0 mtu 1500 lo0: flags=8049<UP,LOOPBACK,RUNNING,MULTICAST> metric 0 mtu 16384 mambo2# I created a /etc/resolv.conf for nameservers mambo2# cat /etc/resolv.conf nameserver 192.168.100.251 nameserver 8.8.8.8 mambo2# Here is a list of jails running [root@mambo /usr/home/jtumusiime]# jls JID IP Address Hostname Path 5 192.168.100.174 mambo2.ug /usr/jails/j01 my host has 4 ip addresses, 3 public and one private: 192.168.100.173 I tried creating a jail using ezjail and this does not work out. [root@mambo /usr/home/jtumusiime]# ezjail-admin update -p -i Error: Cannot find your copy of the FreeBSD source tree in . Consider using 'ezjail-admin install' to create the base jail from an ftp server. [root@mambo /usr/home/jtumusiime]# I have an updated copy of freebsd 7.1 source in /usr/src/ and I did #make buildworld while building the first jail mambo2 Here is an excerpt of ouput of ezjail-admin install ... 221 Goodbye. Trying 193.162.146.4... Connected to ftp.freebsd.org. 220 ftp.beastie.tdk.net FTP server (Version 6.00LS) ready. 331 Guest login ok, send your email address as password. 230 Guest login ok, access restrictions apply. Remote system type is UNIX. Using binary mode to transfer files. 200 Type set to I. 550 pub/FreeBSD-Archive/old-releases/i386/7.1-RELEASE/base: No such file or directory. 221 Goodbye. Could not fetch base from ftp.freebsd.org. Maybe your release (7.1-RELEASE) is specified incorrectly or the host ftp.freebsd.org does not provide that release build. Use the -r option to specify an existing release or the -h option to specify an alternative ftp server. Querying your ftp-server... The ftp server you specified (ftp.freebsd.org) seems to provide the following builds: Trying 193.162.146.4... total 10 drwxrwxr-x 13 1006 1006 512 Feb 20 2011 8.2-RELEASE drwxrwxr-x 13 1006 1006 512 Apr 10 2012 8.3-RELEASE lrwxr-xr-x 1 1006 1006 16 Jan 7 2012 9.0-RELEASE -> i386/9.0-RELEASE drwxrwxr-x 7 1006 1006 1024 Feb 19 2012 ISO-IMAGES -rw-rw-r-- 1 1006 1006 637 Nov 23 2005 README.TXT drwxrwxr-x 5 1006 1006 512 Nov 2 02:59 i386 I do not want to upgrade my freebsd installation. I have googled around; but all on vail

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  • How is the PHP extensions/modules file structure logic based?

    - by dotpointer
    I'm trying to configure/build PHP 5.3.10 on Linux/Slackware 12 but the extensions appear in the wrong directory when I run make install. In the php.ini file is the extension dir defined: /usr/lib/php/extensions Problem is that when I run "make install" the newly built extensions are copied to a subfolder in extensions directory: /usr/lib/php/extensions/no-debug-non-zts-20090626 What am I supposed to do with this... copy the files down from the no-debug-non-zts-20090626 directory into the extensions directory, create symlinks from extensions to the modules in the no-debug-non-zts-20090626 directory (which will take a lot of time) or what? (I know I can do any of them, but I want to know the correct way...)

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  • IndexOutofRangeException while using WriteLine in nested Parallel.For loops

    - by Umar Asif
    I am trying to write kinect depth data to a text file using nested Parallel.For loops with the following code. However, it gives IndexOutofRangeException. The code works perfect if using simple for loops but it hangs the UI since the depth format is set to 640x480 causing the loops to write 307200 lines in the text file at 30fps. Therefore, I switched to Parallel. For scheme. If I omit the writeLine command from the nested loops, the code works fine, which indicates that the IndexOutofRangeException is arising at the writeline command. I do not know how to troubleshoot this. Please advise. Any better workarounds to avoid UI freezing? Thanks. using (DepthImageFrame depthImageframe = d.OpenDepthImageFrame()) { if (depthImageframe == null) return; depthImageframe.CopyPixelDataTo(depthPixelData); swDepth = new StreamWriter(@"E:\depthData.txt", false); int i = 0; Parallel.For(0, depthImageframe.Width, delegate(int x) { Parallel.For(0, depthImageframe.Height, delegate(int y) { p[i] = sensor.MapDepthToSkeletonPoint(depthImageframe.Format, x, y, depthPixelData[x + depthImageframe.Width * y]); swDepth.WriteLine(i + "," + p[k].X + "," + p[k].Y + "," + p[k].Z); i++; }); }); swDepth.Close(); } }

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  • Install php extensions on ubuntu

    - by nute
    I have a Ubuntu 9.10 server. I have installed apache2 and php5 using the apt-get commands. How does one install php extensions? Are there commands like apt-get to get them? Or should I manually look for the files on the php website and set them up in the php.ini? More specifically, I need mcrypt, curl and gd. Thanks

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  • Useful extensions for MediaWiki

    - by Stan
    Can anyone suggestion some useful MediaWiki extension? I've installed PDF export, syntax lighlight, file link protocol, submit in toolbar, enforce strong password. But still eager to know any good/handy extensions. Thanks

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