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  • R plotting multiple histograms on single plot to .pdf as a part of R batch script

    - by Bryce Thomas
    I am writing R scripts which play just a small role in a chain of commands I am executing from a terminal. Basically, I do much of my data manipulation in a Python script and then pipe the output to my R script for plotting. So, from the terminal I execute commands which look something like $python whatever.py | R CMD BATCH do_some_plotting.R. This workflow has been working well for me so far, though I have now reached a point where I want to overlay multiple histograms on the same plot, inspired by this answer to another user's question on Stackoverflow. Inside my R script, my plotting code looks like this: pdf("my_output.pdf") plot(hist(d$original,breaks="FD",prob=TRUE), col=rgb(0,0,1,1/4),xlim=c(0,4000),main="original - This plot is in beta") plot(hist(d$minus_thirty_minutes,breaks="FD",prob=TRUE), col=rgb(1,0,0,1/4),add=T,xlim=c(0,4000),main="minus_thirty_minutes - This plot is in beta") Notably, I am using add=T, which is presumably meant to specify that the second plot should be overlaid on top of the first. When my script has finished, the result I am getting is not two histograms overlaid on top of each other, but rather a 3-page PDF whose 3 individual plots contain the titles: i) Histogram of d$original ii) original - This plot is in beta iii) Histogram of d$minus_thirty_minutes So there's two points here I'm looking to clarify. Firstly, even if the plots weren't overlaid, I would expect just a 2-page PDF, not a 3-page PDF. Can someone explain why I am getting a 3-page PDF? Secondly, is there a correction I can make here somewhere to get just the two histograms plotted, and both of them on the same plot (i.e. 1-page PDF)? The other Stackoverflow question/answer I linked to in the first paragraph did mention that alpha-blending isn't supported on all devices, and so I'm curious whether this has anything to do with it. Either way, it would be good to know if there is a R-based solution to my problem or whether I'm going to have to pipe my data into a different language/plotting engine.

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  • Write transparent HTTP Proxy script in PHP

    - by Leo Izen
    Is there an easy forwarding/transparent php proxy script that I can host on my web server? These are my conditions: I'm using free web hosting, so I have pretty much no control over my machine. Otherwise I could use Perl's HTTP::Proxy module. This means no root password. It does run php though. I already have a server running on port 80. What I mean is I would like to put a php script as index.php on my server that will forward all requests. I don't want a script like PHProxy or Glype where I go to the site, then enter a URL. I want a server so I can enter proxy.example.com:80 in Firefox's or IE's or whatever's proxy settings and it will forward all requests to the server. Preferably (though not fatal if not possible) I would like for it to pass on the USER_AGENT environmental variable (That's the browser) instead of setting itself to be the USER_AGENT I can't start a new Daemon. My server won't allow it. Is there a script that will do this? If so, which?

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  • Ubuntu - Ruby Daemon script creates two processes - sh and ruby - PID file points at sh, not ruby

    - by Jonathan Scoles
    The PID file for a ruby process I have running as a daemon is getting the wrong PID. It appears that running /etc/init.d/sinatra start creates two processes - sh and ruby, and the PID that ends up in the PID file is that of the sh process. This means that when I then run /etc/init.d/sinatra stop or /etc/init.d/sinatra restart, it is killing sh and leaving the ruby process still running. I'd like to know a) why is my script launching two processes - sh and ruby, and not just ruby, and b) how do I fix it to just launch ruby? Details of the setup: I have a small Sinatra server set up on an ubuntu server, running as a daemon. It is set to automatically at server startup run a script named sinatra in /etc/init.d that launches the a control script control.rb, which then runs a ruby daemon command to start the server. The script is run under the 'sinatrauser' account, which has permissions for the directories the script needs. contents of /etc/init.d/sinatra #!/bin/bash # sinatra Startup script for Sinatra server. sudo -u sinatrauser ruby /var/www/sinatra/control.rb $1 RETVAL=$? exit $RETVAL To install this script, I simply copied it to /etc/init.d/ and ran sudo update-rc.d sinatra defaults contents of /var/www/sinatra/control.rb require 'rubygems' require 'daemons' pwd = Dir.pwd Daemons.run_proc('sinatraserver.rb', {:dir_mode => :normal, :dir => "/opt/pids/sinatra"}) do Dir.chdir(pwd) exec 'ruby /var/www/sinatra/sintraserver.rb >> /var/log/sinatra/sinatraOutput.log 2>&1' end portion of output from ps -A 6967 ? 00:00:00 apache2 10181 ? 00:00:00 sh <--- PID file gets this PID 10182 ? 00:00:02 ruby <--- Actual ruby process running Sinatra 12172 ? 00:00:00 sshd The PID file gets created in /opt/pids/sinatra/sinatraserver.rb.pid, and always contains the PID of the sh instance, which is always one less than the PID of the ruby process EDIT: I tried micke's solution, but it had no effect on the behavior I am seeing. This is the output from ps -A f. This output looks the same whether I use sudo -u sinatrauser ... or su sinatrauser -c ... in the service start script in /etc/init.d. 1146 ? S 0:00 sh -c ruby /var/www/sinatra/sinatraserver.rb >> /var/log/sinatra/sinatraOutput.log 2>&1 1147 ? S 0:00 \_ ruby /var/www/sinatra/sinatraserver.rb

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  • What is the difference between executing script using Cygwin and PuTTY?

    - by Lily
    Now I get a script.sh, previously it was executed using PuTTY provided it was written in VMWare, but now I want to execute in Windows using Cygwin, I already copy the script.sh out to the corresponding directory, but some commands Cygwin can not recognise. generate(){ date +%T } TIME = generate() echo " Current Time: $TIME" After execute in Cygwin script.sh: line 3: syntax errot neat unexpected token '$'<\r'' script.sh: line 3:'generate<><

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  • How to integrate a Ipython console in a PyQT application

    - by user1800689
    I am developing PyQt software for my lab. In this software, I am loading different kind of RAW and analyzed data from a mySQL database (usually in arrays). I would like to integrate an Iython console in a Widget, so that I could interact easily with these data. I had some difficulties with Ipython 0.13 to do this. Here is what I already have (The whole code is very long, so I just show the part containing the widget, the Ipython console and the corresponding import line, if you need more, just tell me): ##I load everything useful to my application, including the following line from IPython.frontend.qt.console.qtconsoleapp import IPythonQtConsoleApp ##then is my whole software ##here is a class containing the Graphical User Interface elements. A button call the following function. self.Shell_Widget is the widget containing the Ipython console, self.MainWindow is the application mainwindow def EmbeddedIpython(self): """ This function should launch an Ipython console """ self.Shell_Widget = QtGui.QDockWidget(self.MainWindow) #Widget creation self.MainWindow.addDockWidget(4,self.Shell_Widget) self.Shell_Widget.setMinimumSize(400,420) console = IPythonQtConsoleApp() #Console Creation console.initialize() console.start() self.Shell_Widget.show() So, as wanted, an Ipython console is launched, and seems to work, but I can not access the whole application variables ,arrays etc... I think the Ipython console is launched independently from my software, but here is my limit in programming... Does someone know how to launch Ipython within my application? Maybe a missing parameter, or a different way to integrate Ipython. for information, this doesn't work: Embedding IPython Qt console in a PyQt application Thank you for your help!!

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  • SQL SERVER – 2008 – Missing Index Script – Download

    - by pinaldave
    Download Missing Index Script with Unused Index Script Performance Tuning is quite interesting and Index plays a vital role in it. A proper index can improve the performance and a bad index can hamper the performance. Here is the script from my script bank which I use to identify missing indexes on any database. Please note, if you should not create all the missing indexes this script suggest. This is just for guidance. You should not create more than 5-10 indexes per table. Additionally, this script sometime does not give accurate information so use your common sense. Any way, the scripts is good starting point. You should pay attention to Avg_Estimated_Impact when you are going to create index. The index creation script is also provided in the last column. Download Missing Index Script with Unused Index Script -- Missing Index Script -- Original Author: Pinal Dave (C) 2011 SELECT TOP 25 dm_mid.database_id AS DatabaseID, dm_migs.avg_user_impact*(dm_migs.user_seeks+dm_migs.user_scans) Avg_Estimated_Impact, dm_migs.last_user_seek AS Last_User_Seek, OBJECT_NAME(dm_mid.OBJECT_ID,dm_mid.database_id) AS [TableName], 'CREATE INDEX [IX_' + OBJECT_NAME(dm_mid.OBJECT_ID,dm_mid.database_id) + '_' + REPLACE(REPLACE(REPLACE(ISNULL(dm_mid.equality_columns,''),', ','_'),'[',''),']','') + CASE WHEN dm_mid.equality_columns IS NOT NULL AND dm_mid.inequality_columns IS NOT NULL THEN '_' ELSE '' END + REPLACE(REPLACE(REPLACE(ISNULL(dm_mid.inequality_columns,''),', ','_'),'[',''),']','') + ']' + ' ON ' + dm_mid.statement + ' (' + ISNULL (dm_mid.equality_columns,'') + CASE WHEN dm_mid.equality_columns IS NOT NULL AND dm_mid.inequality_columns IS NOT NULL THEN ',' ELSE '' END + ISNULL (dm_mid.inequality_columns, '') + ')' + ISNULL (' INCLUDE (' + dm_mid.included_columns + ')', '') AS Create_Statement FROM sys.dm_db_missing_index_groups dm_mig INNER JOIN sys.dm_db_missing_index_group_stats dm_migs ON dm_migs.group_handle = dm_mig.index_group_handle INNER JOIN sys.dm_db_missing_index_details dm_mid ON dm_mig.index_handle = dm_mid.index_handle WHERE dm_mid.database_ID = DB_ID() ORDER BY Avg_Estimated_Impact DESC GO Reference: Pinal Dave (http://blog.SQLAuthority.com) Filed under: Pinal Dave, PostADay, SQL, SQL Authority, SQL Download, SQL Index, SQL Query, SQL Scripts, SQL Server, SQL Tips and Tricks, T SQL, Technology

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  • SQL SERVER – 2008 – Unused Index Script – Download

    - by pinaldave
    Download Missing Index Script with Unused Index Script Performance Tuning is quite interesting and Index plays a vital role in it. A proper index can improve the performance and a bad index can hamper the performance. Here is the script from my script bank which I use to identify unused indexes on any database. Please note, if you should not drop all the unused indexes this script suggest. This is just for guidance. You should not create more than 5-10 indexes per table. Additionally, this script sometime does not give accurate information so use your common sense. Any way, the scripts is good starting point. You should pay attention to User Scan, User Lookup and User Update when you are going to drop index. The generic understanding is if this values are all high and User Seek is low, the index needs tuning. The index drop script is also provided in the last column. Download Missing Index Script with Unused Index Script -- Unused Index Script -- Original Author: Pinal Dave (C) 2011 SELECT TOP 25 o.name AS ObjectName , i.name AS IndexName , i.index_id AS IndexID , dm_ius.user_seeks AS UserSeek , dm_ius.user_scans AS UserScans , dm_ius.user_lookups AS UserLookups , dm_ius.user_updates AS UserUpdates , p.TableRows , 'DROP INDEX ' + QUOTENAME(i.name) + ' ON ' + QUOTENAME(s.name) + '.' + QUOTENAME(OBJECT_NAME(dm_ius.OBJECT_ID)) AS 'drop statement' FROM sys.dm_db_index_usage_stats dm_ius INNER JOIN sys.indexes i ON i.index_id = dm_ius.index_id AND dm_ius.OBJECT_ID = i.OBJECT_ID INNER JOIN sys.objects o ON dm_ius.OBJECT_ID = o.OBJECT_ID INNER JOIN sys.schemas s ON o.schema_id = s.schema_id INNER JOIN (SELECT SUM(p.rows) TableRows, p.index_id, p.OBJECT_ID FROM sys.partitions p GROUP BY p.index_id, p.OBJECT_ID) p ON p.index_id = dm_ius.index_id AND dm_ius.OBJECT_ID = p.OBJECT_ID WHERE OBJECTPROPERTY(dm_ius.OBJECT_ID,'IsUserTable') = 1 AND dm_ius.database_id = DB_ID() AND i.type_desc = 'nonclustered' AND i.is_primary_key = 0 AND i.is_unique_constraint = 0 ORDER BY (dm_ius.user_seeks + dm_ius.user_scans + dm_ius.user_lookups) ASC GO Reference: Pinal Dave (http://blog.SQLAuthority.com) Filed under: Pinal Dave, PostADay, SQL, SQL Authority, SQL Download, SQL Index, SQL Performance, SQL Query, SQL Scripts, SQL Server, SQL Tips and Tricks, T SQL, Technology

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  • How to create (via installer script) a task that will install my bash script so it runs on DE startup?

    - by MountainX
    I've been reading for the last couple hours about Upstart, .xinitrc, .xsessions, rc.local, /etc/init.d/, /etc/xdg/autostart, @reboot in crontab and so many other things that I'm totally confused! Here is my bash script. It should start/run after the desktop environment is started and it should continue to run at all times until logout/shutdown. It should start again on reboot. Any time the DE is running, it should run. #!/bin/bash while true; do if [[ -s ~/.updateNotification.txt ]]; then read MSG < ~/.updateNotification.txt kdialog --title 'The software has been updated' --msgbox "$MSG" cat /dev/null > ~/.updateNotification.txt fi sleep 3600 done exit 0 I know zero about using Upstart, but I understand that Upstart is one way to handle this. I'll consider other approaches but most of the things I've been reading about are too complex for me. Furthermore, I can't figure out which approach will meet my requirements (which I'll detail below). There are two steps in my question: How to automatically start the script above, as described above. How to "install" that Upstart task via a bash script (i.e., my "installer"). I assume (or hope) that step 2 is almost trivial once I understand step 1. I have to support all flavors of Ubuntu desktops. Therefore, the kdialog call above will be replaced. I'm considering easybashgui for this. (Or I could use zenity on gnome DE's.) My requirements are: The setup process (installation) must be done via a bash script. I cannot use the GUI method described in the Ubuntu doc AddingProgramToSessionStartup, for example. I must be able to script/automate the setup (installing) process using bash. Currently, it is as simple as having the bash installer script copy the above script into /home/$USER/.kde/Autostart/ The setup process must be universal across Ubuntu derivatives including Unity and KDE and gnome desktops. The same setup script (installer) should run on Linux Mint, Kubuntu, Xbuntu (basically any flavor of Ubuntu and major derivatives such as Linux Mint). For example, we cannot continue to put a script file in /home/$USER/.kde/Autostart/ because that exists only on KDE. The above script should work for each of the limited flavors we use. Hence our interest in using easybashgui instead of kdialog or zenity. See below. The installed monitoring script should only be started after the desktop is started since it will display a GUI message to the user if the update is found. The monitoring script (above) should run without root privileges, of course. But the installer (bash script) can be run as root. I'm not a real developer or a sysadmin. This is a part time volunteer thing for me, so it needs to be easy/simple. I can write bash scripts and I can program a little, but I know nothing about Upstart or systemd, for example. And, unfortunately, my job doesn't give me time to become an expert on init systems or much of anything else related to development and sysadmin. So I have to stick with simple solutions. The easybashgui version of the script might look like this: #!/bin/bash source easybashgui while true; do if [[ -s ~/.updateNotification.txt ]]; then read MSG < ~/.updateNotification.txt message "$MSG" cat /dev/null > ~/.updateNotification.txt fi sleep 3600 done exit 0

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  • Missing resource exception when running OIM design console under OEL6u2

    - by user12674042
    If you're trying to run the OIM design console (xlclient.sh) under OEL 6u2 and keep getting this error after entering the credentials: ... Caused by: java.util.MissingResourceException: Can't find oracle.iam.platform.utils.resources.LRB bundle... Make sure your wlfullclient.jar is in the ext folder of the designconsole folder... and yes, the design console runs perfectly well in OEL 6u2.

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  • How to write PowerShell code part 3 (calling external script)

    - by ybbest
    In this post, I’d like to show you how to calling external script from a PowerShell script. I’d like to use the site creation script as an example. You can download script here. 1. To call the external script, you need to first to grab the script path. You can do so by calling $scriptPath = Split-Path $myInvocation.MyCommand.Path to grab the current script path. You can then use this to build the path for your external script path. $scriptPath = Split-Path $myInvocation.MyCommand.Path $ExternalScript=$scriptPath+"\CreateSiteCollection.ps1" $configurationXmlPath=$scriptPath+"\SiteCollection.xml" [xml] $configurationXml=Get-Content $configurationXmlPath & "$ExternalScript" $configurationXml Write-Host 2.If you like to pass in any parameters , you need to define your script parameters in param () at the top of the script and separate each parameter by a comma (,) and when calling the method you do not need comma (,) to separate each parameter. #Pass in the Parameters. param ([xml] $xmlinput)

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  • How to write PowerShell code part 3 (calling external script)

    - by ybbest
    In this post, I’d like to show you how to calling external script from a PowerShell script. I’d like to use the site creation script as an example. You can download script here. 1. To call the external script, you need to first to grab the script path. You can do so by calling $scriptPath = Split-Path $myInvocation.MyCommand.Path to grab the current script path. You can then use this to build the path for your external script path. $scriptPath = Split-Path $myInvocation.MyCommand.Path $ExternalScript=$scriptPath+"\CreateSiteCollection.ps1" $configurationXmlPath=$scriptPath+"\SiteCollection.xml" [xml] $configurationXml=Get-Content $configurationXmlPath & "$ExternalScript" $configurationXml Write-Host 2.If you like to pass in any parameters , you need to define your script parameters in param () at the top of the script and separate each parameter by a comma (,) and when calling the method you do not need comma (,) to separate each parameter. #Pass in the Parameters. param ([xml] $xmlinput)

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  • Série de tutoriels sur la réalisation d'un émulateur console complet, écrit par BestCoder

    Bonjour à tous,La rubrique 2D/3D/Jeux vous propose des tutoriels sur la création d'un émulateur Chip 8. Celui-ci vous introduira dans le monde l'émulation et vous apprendra à créer votre tout premier émulateur console.Ainsi, vous apprendrez à rechercher les informations nécessaires avant de vous lancer dans la lourde tâche de créer un émulateur, à simuler le comportement des processeurs d'une console, lire une ROM...Bonne lecture

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  • (SYSLINUX QUESTION) How to launch command prompt once syslinux boots up

    - by user1294023
    I have created a bootable USB drive using SYSLINUX I am booting my x86 system correctly. Once system boots I want to stop at console (command prompt) where I can type linux commands (cd etc) and run my executable file manually. Does that mean I have to have busy box installed (for basic commands). What makes system stop at command prompt? I do have /dev/console. My serial console is tty1. Any help is appreciated. #syslinux.cfg serial 0 9600 default MyProgram prompt 1 label Linux display message.msg timeout 100 kernel bzImage append console=tty1,9600 vga=773 initrd initrd.img

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  • insert a BLOB via a sql script ?

    - by David Michel
    Hi, I have an H2 database (http://www.h2database.com) and I'd like to insert a file into a BLOB field via a plain simple sql script (to populate a test database for instance). I know how to do that via the code but I cannot find how to do the sql script itself. I tried to pass the path , i.e. INSERT INTO mytable (id,name,file) VALUES(1,'file.xml',/my/local/path/file.xml); but this fails. Within the code (java for instance), it's easy to create a File object and pass that in, but directly from a sql script, I'm stuck... Any idea ? David

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  • PHP script to replace cgi script

    - by Bridgeyman
    Hey, I have a CGI script that uses an old database driver that is no longer supported. Instead of struggling with this old cgi script, I thought it would be easier to rewrite it in php. It works now as a php script, but I need it to be served from the same web address. When a user accesses http://somesite.com/myscript.cgi, I want it to run the php script. I tried just renaming the php script with .cgi, but that didn't work. This is on an Apache server hosted by Dreamhost. Any advice? Bridger Maxwell

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  • Executing multiple commands from a Windows cmd script

    - by Darren Greaves
    I'm trying to write a Windows cmd script to perform several tasks in series. However, it always stops after the first command in the script. The command it stops after is a maven build (not sure if that's relevant). How do I make it carry on and run each task in turn please? Installing any software or configuring the registry etc is completely out of the question - it has to work on a vanilla Windows XP installation I'm afraid. Ideally I'd like the script to abort if any of the commands failed, but that's a "nice to have", not essential. Thanks.

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  • Redirect PHP-Shell-Script output

    - by Corelgott
    Hi Folks, i have got a php-script foo.php #!/usr/bin/php -c /etc/php5/cli/php.ini -q <?php echo 'hello'; // & do some stuff ?> I call this script not wrapped by a sh-script but using it directly in a cron job. To get rid of it's output i normally would just create a sh-file which calls /usr/bin/php -c /etc/php5/cli/php.ini -q foo.php > /dev/null 2 > /dev/null now i'd like to do this in the interpreter-declaration of the php file it self... so i am looking for the syntax for: #!/usr/bin/php -args [file's content] > /redirect 2 > /redirect i have kind of a hard time googleing for it... so if anybody could point me into the right direction i would really appreciate it! Thx in advance Corelgott

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  • Execuitng script in threads

    - by Pedro Magalhaes
    Hi. I wanna make an app that executes remote scripts. I am going to design it like a Windows Service that listen on tcp/ip port. Every new request I will execute a python scripts. So I can handle any number of tcp/ip request at same time, so I will need to execute python script in separate threads. How can I do that? Is that simple? The script will share some objects, like Log files(text files) and other modules. In the log file example every script will write in the same file. So the app (windows service) will be responsible for do that. I need to make this objects thread safe, right?

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  • C# Script version of PyBinding for WPF

    - by Jim Strav
    I wrote a CSharpScriptBinding roughly equivalent to the PyBinding on CodePlex. It uses the C# script engine from http://www.csscript.net. After I wrote it, I kind of decided it might not really be something good to use. Although it caches the compiled script code as an already compiled Assembly, my concern is that I will have one temporary Assembly created each time I use the binding. Will this add up to a problem in the future? If so, maybe there is a way in the C# script engine that I don't know about to optimize this further...? Any thoughts to confirm my suspicion that this was just a bad idea (but useful excersise in learning more about bindings and converters)?

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