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• using R to estimate finite mixture model with underlying Markov process

  - by stevejb

  Hello, My apologies if this is more of a statistics question than an R question. I am trying to estimate the following model in R. y_t = mu0 (1 - S_t) + mu1 S_t + e_t e_t ~ N(0, sigma_t^2) sigma_t^2 = sigma_0^2 (1 - S_t) + sigma_1^2 S_t where mu_t = mu0 if S_t = 0, mu_t = mu1 if S_t = 1, and S_t is a Markov process, either 0 or 1, with transition probabilities P(S_t = 1 | S_t-1 = 1 ) = p and P(S_t = 0 | S_t-1 = 0 ) = q. Would 'flexmix' be a good library to use for this? I am new to this kind of statistics so any pointer to the right library would be appreciated. Thanks,

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• How to find subgroups statistics in pandas?

  - by user2808117

  I am grouping a DataFrame using multiple columns (e.g., columns A, B - my_df.groupby(['A','B']) ), is there a better (less lines of code, faster) way of finding how many rows are in each subgroup and how many subgroups are there in total? at the moment I am using: def get_grp_size(grp): grp['size'] = len(grp) return grp my_df = my_df.groupby(['A','B']).apply(get_grp_size) my_df[['A','B','size']].drop_duplicates().size

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• What is the command for Index optimization and update statistics for Oracle 10g and 11g?

  - by indra

  I am Loading large no of rows into a table from a csv data file . For every 10000 records I want to update the indexs on the table for optimization (update statistics ). Any body tell me what is the command i can use? Also what is MSSQL "UPDATE STATISTICS" equivalent in Oracle.is Update statistics means index optimization or gatehring statistics. I am using Oracle 10g and 11g. Thanks in advance.

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• Examining C/C++ Heap memory statistics in gdb

  - by fd

  I'm trying to investigate the state of the C/C++ heap from within gdb on Linux amd64, is there a nice way to do this? One approach I've tried is to "call mallinfo()" but unfortunately I can't then extract the values I want since gdb deal with the return value properly. I'm not easily able to write a function to be compiled into the binary for the process I am attached to, so I can simply implement my own function to extract the values by calling mallinfo() in my own code this way. Is there perhaps a clever trick that will allow me to do this on-the-fly? Another option could be to locate the heap and traverse the malloc headers / free list; I'd appreciate any pointers to where I could start in finding the location and layout of these. I've been trying to Google and read around the problem for about 2 hours and I've learnt some fascinating stuff but still not found what I need.

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• How can I make the output from tapply() into a data.frame

  - by James Thompson

  I have a data.frame in R that looks like this: score rms template aln_id description 1 -261.410 4.951 2f22A.pdb 2F22A_1 S_00001_0000002_0 2 -231.987 21.813 1wb9A.pdb 1WB9A_4 S_00002_0000002_0 3 -263.722 4.903 2f22A.pdb 2F22A_3 S_00003_0000002_0 4 -269.681 17.732 1wbbA.pdb 1WBBA_6 S_00004_0000002_0 5 -258.621 19.098 1rxqA.pdb 1RXQA_3 S_00005_0000002_0 6 -246.805 6.889 1rxqA.pdb 1RXQA_15 S_00006_0000002_0 7 -281.300 16.262 1wbdA.pdb 1WBDA_11 S_00007_0000002_0 8 -271.666 4.193 2f22A.pdb 2F22A_2 S_00008_0000002_0 9 -277.964 13.066 1wb9A.pdb 1WB9A_5 S_00009_0000002_0 10 -261.024 17.153 1yy9A.pdb 1YY9A_2 S_00001_0000003_0 I can calculate summary statistics on the data.frame like this: > tapply( d$score, d$template, mean ) 1rxqA.pdb 1wb9A.pdb 1wbbA.pdb 1wbdA.pdb 1yy9A.pdb 2f22A.pdb -252.7130 -254.9755 -269.6810 -281.3000 -261.0240 -265.5993 Is there an easy way that I coerce this output back into a data.frame? I'd like for it to have these two columns: d$template mean I love tapply, but right now I'm cutting and pasting the results from tapply into a text file and hacking it up a bit to get the summary statistics that I want with appropriate names. This feels very wrong, and I'd like to do something better!

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• Howto obtain Per-Interface statistics on windows

  - by Canacourse

  I am trying to find the most used Network card on windows 200 or XP. I planned to obtain the number of packets sent trough each NIC to determine the main NIC. I thought IP Helper might give me this information but also it looks like the functions in IP helper only give stats for all interfaces. I know this can be done. Any ideas? Many Thanks...

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• Social statistics for a given page

  - by Trendee

  I have looked through the API's of facebook and twitter but i cannot seem to find the answer to my question. On websites like http://punchfork.com/recipe/Porkitos-Crispy-Prosciutto-Chips-Nom-Nom-Paleo On the right hand side they have the social stats page with information such as Tweets, Facebook Shares and Stumbleupons. My question is how do they record or gather these results? Is it a case of they have a button that records it in their database then sends you to the page to tweet/share/stumble? But surely that couldn't be accurate as people might not continue to fill out the action.

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• R statistics, change ranked tables to paired

  - by cousin_pete

  I have data for many tables like: event_id player finish 1 a 1 1 b 2 1 c 3 1 d 4 2 b 1 2 e 2 2 f 3 2 a 3 2 g 5 Many event_id's, each from 5 to 20 players, finish may be tied. In order to use conditional logistic regression in R I would like to reformat the tables to be like: event_id player1 player2 result 1 a b 1 1 a c 1 1 a d 1 1 b c 1 1 b d 1 1 c d 1 2 b e 1 2 b f 1 2 b a 1 2 b g 1 2 e f 1 2 e a 1 2 e g 1 2 f a 0.5 2 f g 1 2 a g 1 An event_id of 4 players will have 4*3/2 = 6 records in the new table, 5 players will have 5*4/2 = 10 records and so on. If player "a" has "finish" less than player "b" the "result" is 1. If "finish" is equal the "result" is 0.5. If player "a" has finish greater than player "b" then the "result" would be 0. Any help appreciated!

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• Bad Performance when SQL Server hits 99% Memory Usage

  - by user15863

  I've got a server that reports 8 GB of ram used up at 99%. When restart Sql Server, it drops down to about 5% usage, but gradually builds back up to 99% over about 2 hours. When I look at the sqlserver process, its reported as only using 100k ram, and generally never goes up or below that number by very much. In fact, if I add up all the processes in my TaskManager, it's barely scratching the surface of my total available (yet TaskManager still shows 99% memory usage with "All processes shown"). It appears that Sql Server has a huge memory leak going on but it's not reporting it. The server has ran fine for nearly two years, with this only starting to manifest itself in the last 3-4 weeks. Anyone seen this or have any insight into the problem? EDIT When the server hits 99%, performance goes down hill. All queries to the server, apps, etc. come to a crawl. Restarting the service makes things zippy again, until 2 hours has passed and the server hits 99% once again.

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• Low CPU performance with low usage and clock - Windows 8.1

  - by Daniele

  I recently deleted everything from my PC and reinstalled Windows 8.1 from scratch. When I first booted into Windows everything was extremely slow though the CPU usage was very low (about 1%). After installing some drivers the problem seemed to be solved, I was able to use my PC normally. Today I installed a game and I noticed a strange behavior: the game was playable but the performance worsened more and more in the time. This is the situation BEFORE opening the game (normal): This is AFTER some minutes inside the game (low CPU usage and clock): Some information about my system: PC: Sony Vaio S13 (SVS13A1C5E) OS: Windows 8.1 CPU: Intel Core i7-3520M 2.90GHz GPU(1): Intel HD Graphics 4000 GPU(2): NVIDIA GeForce GT 640M LE I tried searching for new drivers and other solutions but noting worked and I don't know what is the cause. I did not checked the temperatures but the fans are not running fast and the PC does not look overheated. Update: Max CPU Temp: 66°C, Max GPU Temp: 61°C The strange thing is that the GPU load is 99% (GPU-Z) and the fan is almost silent. Update 2: I had troubles with Sony Vaio software, I can't get the FN keys and the STAMINA/SPEED switch to work (it is a physical switch to enable/disable the Nvidia card and change the Power Profile). I'm saying this because I remember that before reinstalling Windows there was an option in the Vaio Control Center (now it is not there anymore) that allowed me to choose from something like "priority to performance (ventilation)" or "priority to silence". The current behavior looks like a "priority to silence", but I can't get the stamina-speed switch to work and so I don't see similar oprions in the Vaio Control Center. I don't know if the problem is related to this.

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• How to tell which process is hogging my CPU when they don't add up to 100%?

  - by endolith

  Ubuntu's System Monitor applet shows 100% CPU usage continuously. If I click it, the resources tab shows it at 100% continuously, too. If I go to processes, though, to find out which process is the culprit, there is nothing above 10%. If I run top there is nothing above 10%. The individual processes do not add up to 100%. I try killing lots of processes, but the overall usage continues to be 100%. How can I find out what's hogging the CPU? This is an unusual situation on a computer I use daily, which is never anywhere near 100% CPU unless I'm doing something that requires it (like loading 32 Firefox tabs), after which it goes back to a normal idle level. It's not a new install or anything. There is no reason the processor should be maxed out. I'm not sure when it started or if I changed something that caused it to happen. Normally I would use top or System Monitor and find the process that had gone out of control, but I can't find anything with those tools this time. It persists after reboots and everything. And the processor is obviously hot, so it's not an erroneous reading. Update: I tried killing every process, one at a time, until the problem went away, and killing vino-server finally fixed it, even though that process never went above 5%. I had enabled Remote Desktop a few days ago (and have obviously now disabled it). But the question remains: How did a single process manage to use 100% CPU while top only showed that process at 5%? How do I identify culprits like this in the future? Looks like I'm not the only one who's had this problem: Still a problem in both jaunty & karmic. Interestingly, both System Monitor & htop do not show the sum of individual processes being anywhere near 100% cpu.

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• Sharepoint Central Administration stuck / high CPU usage

  - by johnnyb10

  I'm using WSS 3 and I recently added a new web application to my SharePoint Server. After adding it, I wasn't able to open the Central Administration site. I also noticed that there was a w3wp.exe error (Event ID 1000) in the Event Viewer. The situation now is that the w3wp.exe process is hovering around 50% CPU usage continuously. I installed a program called IIS Peek, and it shows continuous GET requests on the Central Administration site; this happens even if I stop the Central Administration site in IIS. The IP addresses identified in the GET request is my workstation, which is what I used to attempt to access Central Administration after I created the new web application. Can someone explain what's going on and how I might fix it? It seems as if my computer tried to access Central Administration and then it hung, but the page requests that were happening at the time are somehow continuing over and over again. So my two problems are the inability to access Central Administration, and the CPU Usage of w3wp.exe, which I'm assuming are two symptoms of the same problem. I'd like to know if there's anything I can do besides restarting IIS, because we have clients accessing other sites on this server. Thanks.

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• What is causing sudden freezing during running real-time program?

  - by Trevor Boyd Smith

  So I run a high intensive (CPU/GPU) real-time program. During normal execution suddenly everything freezes for 1-4 seconds. I opened "Process Explorer" in the background to help gain insight and maybe identify something. Here is what the CPU/GPU graphs looks like when I align them in time: Notice the 4 distinct drops in both the CPU/GPU. You can see that it goes from some sort of positive CPU/GPU usage to almost zero. These drops in the graph align with when the real-time program suddenly freezes. How do I find what is causing these sudden drops? NOTE: When you put your mouse over the graph it tells you the time, accurate to the second, for where your cursor is. Maybe this mouse over feature could be helpful in some way (e.g. what if you had a log of all processes every 100ms). EDIT: The real-time program is a video game and so I can't watch some sort of instrumentation while the video game is running. I need a solution that let's you look back in time somehow to see what was happening when the slow down occurred. EDIT: RE - Recording Data vs using real-time monitor: So the windows performance recorder is for some reason not recording what I expect it to record. So I switched to using "perfmon" and then opening it's "resource monitor". RE - Setting it up so I can view real-time monitor: In the video game I set it to spectate and then put the video game in "windowed" mode so that I can view the real time display that Resource Monitor has. Now that I can get semi-real time (only once per second... how do you get more than once per second?) I started looking at the various real time data readouts. Getting to the cause: I noticed a strong correlation in high disk IO and low CPU usage (which is also seen by having in-game freezing). How do you use resource monitor to find out who is doing all this offending disk IO?

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• SharePoint Web Analytics not tracking usage for main application

  - by Chris W

  My SP 2010 setup is two separate applications - one for the main portal and one for MySite. Whilst WebAnalytics is tracking usage of MySite it's not showing any stats for the main Portal. The only thing it lists is the number of site collections but no page views etc. The WA service is clearly running to pick up data for MySite. In Configure web analytics and health data collection everything is ticked. I can't find any obvious settings that are different between the two applications. Where should I look to get usage tracking correctly? Edit: Having played with the date ranges I see that actually I've got no stats in the last 7 days for any site at all including MySite which has been working at some point previously. Edit: What does each service (WA Data Processing Service vs WA Web Services) do and where should they be active? At present they're both running on an App server but not on the WFEs (although they were running on WFEs previously). From what I can gather than only need to run on an App server but I find it strange that the only logged activity I see in the staging database relates to Central Admin URLs on the App server and nothing from the WFEs.

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• Sharepoint Central Administration stuck / high CPU usage

  - by johnnyb10

  I'm using WSS 3 and I recently added a new web application to my SharePoint Server. After adding it, I wasn't able to open the Central Administration site. I also noticed that there was a w3wp.exe error (Event ID 1000) in the Event Viewer. The situation now is that the w3wp.exe process is hovering around 50% CPU usage continuously. I installed a program called IIS Peek, and it shows continuous GET requests on the Central Administration site; this happens even if I stop the Central Administration site in IIS. The IP addresses identified in the GET request is my workstation, which is what I used to attempt to access Central Administration after I created the new web application. Can someone explain what's going on and how I might fix it? It seems as if my computer tried to access Central Administration and then it hung, but the page requests that were happening at the time are somehow continuing over and over again. So my two problems are the inability to access Central Administration, and the CPU Usage of w3wp.exe, which I'm assuming are two symptoms of the same problem. I'd like to know if there's anything I can do besides restarting IIS, because we have clients accessing other sites on this server. Thanks.

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• Linux disk usage analyser that acts like symlinks are real files

  - by Rory

  I am using git-annex, an extension to the DVCS git, which is designed for handling large files. It makes heavy use of symlinks. The actual large files are moved to the .git/annex directory and the original files are symlinked to there. I am running out of disk space, and need to clear up, and see what's using all my space. Usually I'd use a disk usage tool like ncdu, Baobab or Filelight. However they treat the symlink as essentially empty, and only count the file that it is pointing to as using any space. Which means when I use git-annex, it shows no space used in the main directories and lots of space used in the .git/annex directory. This is not helpful. Is there any (graphical or ncurses) based disk usage programme for linux (apt-get installable would be easie that is capable (through options or not) of counting a symlink as using up the space that the original file uses up? Many have options for different behaviour for hard links, so makes sense that some should h (I know counting symlinks as using space has flaws, like counting the space space twice, broken symlinks, etc. But that's OK for my purposes)

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• Fresh install CentOS 6.4 64b with directadmin slowly consumes all memory and crashes

  - by Coen Ponsen

  Dear server fault community, This is my first question on server fault, i'm new to server (mis)configuration so please forgive me for asking something stupid :) I'm running Directadmin on a CentOS 6.4 64b with 4GB memory and over 10000Gh virtual machine. I migrated my websites because my former vps couldn't keep up anymore. Only half of the websites from this 1GB machine were migrated jet. So the migration is still in progress and already my server crashes every day. The server performance up until that moment is perfect. The directadmin log files show nothing out of the ordinary. Yesterday only the mysql server crashed but it also crashed the entire machine before. The memory usage in DA seems to be normal: directadmin directadmin (pid 3923 22158 22159 22160 22161 22162 )8.75 MB dovecot dovecot (pid 3851 ) 47.8 MB exim exim (pid 1350 ) 1.29 MB httpd (pid 21525 21528 21529 21530 21531 21532 21546 21571 21742 21743 21744 )490.4 MB mysqld mysqld (pid 1299 ) 287.8 MB named named (pid 3807 ) 16.3 MB proftpd proftpd (pid 1481 ) 1.91 MB sshd sshd (pid 1173 21494 ) 5.16 MB Restarting services immediately frees up memory, but slowly over time the memory usage increases(about 24 hours to crash). The commands: # sync # echo 3 > /proc/sys/vm/drop_caches Will free al memory correct. I could just create a cronjob but it seems the wrong way around to me. I can't seem to pinpoint the cause. Any advices, references or tips are highly appreciated! Greetings, Coen edit: free -m : after drop_caches: total used free shared buffers cached Mem: 3830 735 3095 0 0 21 -/+ buffers/cache: 712 3117 Swap: 991 0 991 I'll post another one this evening.

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• What cause high CPU usage on the server during file upload

  - by bosiang

  When I try to upload a huge file size (approx 2GB), the server cpu usage goes really high. What should I do to fix this? I just use standard html form and php, for file upload. I'm sorry if I post on the wrong forum. Please point me to the right direction here is the result of "top" command during uploading 4 files (18mb, 38mb, 60mb, 33mb) 1904 apache 20 0 33504 5740 1952 R 28.3 0.2 0:02.19 httpd 1905 apache 20 0 33504 5740 1952 R 28.3 0.2 0:01.99 httpd 1903 apache 20 0 33232 6968 3060 R 28.0 0.2 0:01.98 httpd 1910 apache 20 0 33240 6020 2248 S 11.5 0.2 0:02.85 httpd 2133 root 20 0 2656 1124 896 R 1.6 0.0 0:00.71 top 1 root 20 0 2864 1404 1188 S 0.0 0.0 0:03.99 init the code for chunking, although eventhough I don't use this code (just simple file upload), it still cause that high cpu usage function sendRequest() { //clean the screen //bars.innerHTML = ''; var file = document.getElementById('fileToUpload'); for(var i = 0; i < file.files.length; i++) { var blob = file.files[i]; var originalFileName = blob.name; var filePart = 0 const BYTES_PER_CHUNK = 100 * 1024 * 1024; // 10MB chunk sizes. var realFileSize = blob.size; var start = 0; var end = BYTES_PER_CHUNK; totalChunks = Math.ceil(realFileSize / BYTES_PER_CHUNK); alert(realFileSize); while( start < realFileSize ) { if (blob.webkitSlice) { //for Google Chrome var chunk = blob.webkitSlice(start, end); } else if (blob.mozSlice) { //for Mozilla Firefox var chunk = blob.mozSlice(start, end); } uploadFile(chunk, originalFileName, filePart, totalChunks, i); filePart++; start = end; end = start + BYTES_PER_CHUNK; } } }

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• SQL Server 2012 memory usage steadily growing

  - by pgmo

  I am very worried about the SQL Server 2012 Express instance on which my database is running: the SQL Server process memory usage is growing steadily (1.5GB after only 2 days working). The database is made of seven tables, each having a bigint primary key (Identity) and at least one non-unique index with some included columns to serve the majority of incoming queries. An external application is calling via Microsoft OLE DB some stored procedures, each of which do some calculations using intermediate temporary tables and/or table variables and finally do an upsert (UPDATE....IF @@ROWCOUNT=0 INSERT.....) - I never DROP those temporary tables explicitly: the frequency of those calls is about 100 calls every 5 seconds (I saw that the DLL used by the external application open a connection to SQL Server, do the call and then close the connection for each and every call). The database files are organized in only one filgegroup, recovery type is set to simple. Some questions to diagnose the problem: is that steadily growing memory normal? did I do any mistake in database design which probably lead to this behaviour? (no explicit temp-table drop, filegroup organization, etc) can SQL Server manage such a stored procedure call rate (100 calls every 5 seconds, i.e. 100 upsert every 5 seconds, beyond intermediate calculations)? do the continuous "open connection/do sp call/close connection" pattern disturb SQL Server? is it possible to diagnose what is causing such a memory usage? Perhaps queues of wating requests? (I ran sp_who2, but I didn't see a big amount of orphan connections from the external application) if I restrict the amount of memory which SQL Server is allowed to use, may I sooner or later get into trouble?

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• Memory Usage by Mapped Files (Win7 64Bit)

  - by Dexter

  When copying files from/to my external USB3 HDD memory usage in Win7 goes up to 100% and remains there. I'm not sure whether this is a problem caused by faulty drivers or not, but I already have the current version of them (Etron USB3 controller on a Gigabyte 990fxa board).. Using RAMMap it becomes obvious that the files, that are to be copied, are mapped into memory. Clicking on Empty > Empty System Working Set seems to temporarily fix the problem (without causing any trouble with the file copy process), but it needs to be done every few seconds. Is there any way to schedule this operation to happen ever 10 or so seconds on its own? What underlying system command is RAMMap using? Or, alternatively, is there any way to limit how much RAM mapped files may use in Windows 7? I know mapped files would usually be removed from memory if other programs need the memmory, but while memmory usage is at 100% the system starts freezing up for half a second or so everytime I click anything .. thus the automatic removal of unused memory contents seems to be failing here.

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• Perfmon % Processor Time vs. task manager's CPU usage

  - by nat

  I'm new to using Perfmon and performance monitoring in general (so go easy on me please ;) I know that Perfmon doesn't have anything exactly like Task Manager's CPU usage display, but I'm trying to figure out how to monitor user's CPU usage via Perfmon in a similar way, and trying to understand the measurements (or how to convert the numbers to get a similar understanding) For example, if in Task Manager, a particular user is consistently using more than 5% CPU, I would want to contact the user about it. I learn best by example, so here is exactly what I'm trying to do, with a specific example: This is for a 32-bit Dual Quad Core Windows 2003 web server (8 CPUs), there are many web sites on the server, each running within their own application pool/worker process ID. Through other research here I learned of a registry change that I made so that the PID shows up with the w3wp process so I can easily identify the site later by cross-referencing it. I set up a counter with the following settings: Process -> % Processor Time -> all instances Here is an example. Say I'm interested in "black line" user in this graph below, as his process is spiking quite high compared to all the other users: (I wasn't allowed to post the image as I'm a new user on this site.. I've uploaded the image to:) http://i35.tinypic.com/106yn8k.jpg So... using this as an example, I see that they have an AVERAGE % PROCESSOR TIME of 23.264 , and have spiked as high as 103.124 So what exactly does this 23.264 number mean to me? Is it similar to an average of Task Manager's CPU reading for this user? Or, since this server has 8 CPUs, should I divide this number by 8? (23.264/8 = 2.9% AVERAGE CPU LOAD?) Thanks in advance.

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• Server Memory with Magento

  - by Mohamed Elgharabawy

  I have a cloud server with the following specifications: 2vCPUs 4G RAM 160GB Disk Space Network 400Mb/s System Image: Ubuntu 12.04 LTS I am only running Magento CE 1.7.0.2 on this server. Nothing else. Usually, the server has a loading time of 4-5 seconds. Recently, this has dropped to over 30 seconds and sometimes the server just goes away and I get HTTP error reports to my email stating that HTTP requests took more than 20000ms. Running top command and sorting them returns the following: top - 15:29:07 up 3:40, 1 user, load average: 28.59, 25.95, 22.91 Tasks: 112 total, 30 running, 82 sleeping, 0 stopped, 0 zombie Cpu(s): 90.2%us, 9.3%sy, 0.0%ni, 0.0%id, 0.0%wa, 0.0%hi, 0.3%si, 0.2%st PID USER PR NI VIRT RES SHR S %CPU %MEM TIME+ COMMAND 31901 www-data 20 0 360m 71m 5840 R 7 1.8 1:39.51 apache2 32084 www-data 20 0 362m 72m 5548 R 7 1.8 1:31.56 apache2 32089 www-data 20 0 348m 59m 5660 R 7 1.5 1:41.74 apache2 32295 www-data 20 0 343m 54m 5532 R 7 1.4 2:00.78 apache2 32303 www-data 20 0 354m 65m 5260 R 7 1.6 1:38.76 apache2 32304 www-data 20 0 346m 56m 5544 R 7 1.4 1:41.26 apache2 32305 www-data 20 0 348m 59m 5640 R 7 1.5 1:50.11 apache2 32291 www-data 20 0 358m 69m 5256 R 6 1.7 1:44.26 apache2 32517 www-data 20 0 345m 56m 5532 R 6 1.4 1:45.56 apache2 30473 www-data 20 0 355m 66m 5680 R 6 1.7 2:00.05 apache2 32093 www-data 20 0 352m 63m 5848 R 6 1.6 1:53.23 apache2 32302 www-data 20 0 345m 56m 5512 R 6 1.4 1:55.87 apache2 32433 www-data 20 0 346m 57m 5500 S 6 1.4 1:31.58 apache2 32638 www-data 20 0 354m 65m 5508 R 6 1.6 1:36.59 apache2 32230 www-data 20 0 347m 57m 5524 R 6 1.4 1:33.96 apache2 32231 www-data 20 0 355m 66m 5512 R 6 1.7 1:37.47 apache2 32233 www-data 20 0 354m 64m 6032 R 6 1.6 1:59.74 apache2 32300 www-data 20 0 355m 66m 5672 R 6 1.7 1:43.76 apache2 32510 www-data 20 0 347m 58m 5512 R 6 1.5 1:42.54 apache2 32521 www-data 20 0 348m 59m 5508 R 6 1.5 1:47.99 apache2 32639 www-data 20 0 344m 55m 5512 R 6 1.4 1:34.25 apache2 32083 www-data 20 0 345m 56m 5696 R 5 1.4 1:59.42 apache2 32085 www-data 20 0 347m 58m 5692 R 5 1.5 1:42.29 apache2 32293 www-data 20 0 353m 64m 5676 R 5 1.6 1:52.73 apache2 32301 www-data 20 0 348m 59m 5564 R 5 1.5 1:49.63 apache2 32528 www-data 20 0 351m 62m 5520 R 5 1.6 1:36.11 apache2 31523 mysql 20 0 3460m 576m 8288 S 5 14.4 2:06.91 mysqld 32002 www-data 20 0 345m 55m 5512 R 5 1.4 2:01.88 apache2 32080 www-data 20 0 357m 68m 5512 S 5 1.7 1:31.30 apache2 32163 www-data 20 0 347m 58m 5512 S 5 1.5 1:58.68 apache2 32509 www-data 20 0 345m 56m 5504 R 5 1.4 1:49.54 apache2 32306 www-data 20 0 358m 68m 5504 S 4 1.7 1:53.29 apache2 32165 www-data 20 0 344m 55m 5524 S 4 1.4 1:40.71 apache2 32640 www-data 20 0 345m 56m 5528 R 4 1.4 1:36.49 apache2 31888 www-data 20 0 359m 70m 5664 R 4 1.8 1:57.07 apache2 32511 www-data 20 0 357m 67m 5512 S 3 1.7 1:47.00 apache2 32054 www-data 20 0 357m 68m 5660 S 2 1.7 1:53.10 apache2 1 root 20 0 24452 2276 1232 S 0 0.1 0:01.58 init Moreover, running free -m returns the following: total used free shared buffers cached Mem: 4003 3919 83 0 118 901 -/+ buffers/cache: 2899 1103 Swap: 0 0 0 To investigate this further, I have installed apache buddy, it recommeneded that I need to reduce the maxclient connections. Which I did. I also installed MysqlTuner and it suggests that I need to set my innodb_buffer_pool_size to = 3.0G. However, I cannot do that, since the whole memory is 4G. Here is the output from apache buddy: ### GENERAL REPORT ### Settings considered for this report: Your server's physical RAM: 4003MB Apache's MaxClients directive: 40 Apache MPM Model: prefork Largest Apache process (by memory): 73.77MB [ OK ] Your MaxClients setting is within an acceptable range. Max potential memory usage: 2950.8 MB Percentage of RAM allocated to Apache 73.72 % And this is the output of MySQLTuner: -------- Performance Metrics ------------------------------------------------- [--] Up for: 47m 22s (675K q [237.552 qps], 12K conn, TX: 1B, RX: 300M) [--] Reads / Writes: 45% / 55% [--] Total buffers: 2.1G global + 2.7M per thread (151 max threads) [OK] Maximum possible memory usage: 2.5G (64% of installed RAM) [OK] Slow queries: 0% (0/675K) [OK] Highest usage of available connections: 26% (40/151) [OK] Key buffer size / total MyISAM indexes: 36.0M/18.7M [OK] Key buffer hit rate: 100.0% (245K cached / 105 reads) [OK] Query cache efficiency: 92.5% (500K cached / 541K selects) [!!] Query cache prunes per day: 302886 [OK] Sorts requiring temporary tables: 0% (1 temp sorts / 15K sorts) [!!] Joins performed without indexes: 12135 [OK] Temporary tables created on disk: 25% (8K on disk / 32K total) [OK] Thread cache hit rate: 90% (1K created / 12K connections) [!!] Table cache hit rate: 17% (400 open / 2K opened) [OK] Open file limit used: 12% (123/1K) [OK] Table locks acquired immediately: 100% (196K immediate / 196K locks) [!!] InnoDB buffer pool / data size: 2.0G/3.5G [OK] InnoDB log waits: 0 -------- Recommendations ----------------------------------------------------- General recommendations: Run OPTIMIZE TABLE to defragment tables for better performance MySQL started within last 24 hours - recommendations may be inaccurate Enable the slow query log to troubleshoot bad queries Adjust your join queries to always utilize indexes Increase table_cache gradually to avoid file descriptor limits Read this before increasing table_cache over 64: http://bit.ly/1mi7c4C Variables to adjust: query_cache_size ( 64M) join_buffer_size ( 128.0K, or always use indexes with joins) table_cache ( 400) innodb_buffer_pool_size (= 3G) Last but not least, the server still has more than 60% of free disk space. Now, based on the above, I have few questions: Are these numbers normal? Do they make sense? Do I need to upgrade the server? If I don't need to upgrade and my configuration is not correct, how do I optimize it?

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• What is the exact difference between MEM_RESERVE and MEM_COMMIT states?

  - by pj4533

  As I understand it MEM_RESERVE is actually 'free' memory, ie available to be used by my process, but just hasn't been allocated yet? Or it was previously allocated, but had since been freed? Specifically, see in my !address output below how I am nearly out of virtual address space (99900 KB free, 2307872 as MEM_PRIVATE. But the states shows that 44.75% of that is actually MEM_RESERVE. Does that mean it is actually free, in my process...but maybe fragmented? 0:000> !address -summary --------- PEB a8bd8000 not found ---- -------------------- Usage SUMMARY -------------------------- TotSize ( KB) Pct(Tots) Pct(Busy) Usage 259af000 ( 616124) : 22.29% 23.12% : RegionUsageIsVAD 618f000 ( 99900) : 03.61% 00.00% : RegionUsageFree 13e22000 ( 325768) : 11.78% 12.22% : RegionUsageImage 42c04000 ( 1093648) : 39.56% 41.04% : RegionUsageStack 42d000 ( 4276) : 00.15% 00.16% : RegionUsageTeb 2625d000 ( 625012) : 22.61% 23.45% : RegionUsageHeap 0 ( 0) : 00.00% 00.00% : RegionUsagePageHeap 0 ( 0) : 00.00% 00.00% : RegionUsagePeb 1000 ( 4) : 00.00% 00.00% : RegionUsageProcessParametrs 1000 ( 4) : 00.00% 00.00% : RegionUsageEnvironmentBlock Tot: a8bf0000 (2764736 KB) Busy: a2a61000 (2664836 KB) -------------------- Type SUMMARY -------------------------- TotSize ( KB) Pct(Tots) Usage 618f000 ( 99900) : 03.61% : <free> 13e22000 ( 325768) : 11.78% : MEM_IMAGE 1e77000 ( 31196) : 01.13% : MEM_MAPPED 8cdc8000 ( 2307872) : 83.48% : MEM_PRIVATE -------------------- State SUMMARY -------------------------- TotSize ( KB) Pct(Tots) Usage 57235000 ( 1427668) : 51.64% : MEM_COMMIT 618f000 ( 99900) : 03.61% : MEM_FREE 4b82c000 ( 1237168) : 44.75% : MEM_RESERVE Largest free region: Base 7e4a1000 - Size 000ff000 (1020 KB)

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• "Mem Usage" higher than "VM Size" in WinXP Task Manager

  - by Frederick

  In my Windows XP Task Manager, some processes display a higher value in the Mem Usage column than the VMSize. My Firefox instance, for example shows 111544 K as mem usage and 100576 K as VMSize. According to the help file of Task Manager Mem Usage is the working set of the process and VMSize is the committed memory in the Virtual address space. My question is, if the number of committed pages for a process is A and the number of pages in physical memory for the same process is B, shouldn't it always be B = A? Isn't the number of pages in physical memory per process a subset of the committed pages? Or is this something to do with sharing of memory among processes? Please explain. (Perhaps my definition of 'Working Set' is off the mark). Thanks.

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• XmlDocument caching memory usage

  - by mdsharpe

  We are seeing very high memory usage in .NET web applications which use XmlDocument. A small (~5MB) XML document is loaded into an XmlDocument object and stored in HttpContext.Cache for easy querying and XSLT transformation on each page load. The XML is modified on disk periodically so a cache has a dependency on the file. Such an application appears to be using hundreds of megabytes of RAM. I have experimented with requesting garbage collection on each request start, and this keeps the RAM usage far lower but I cannot imagine this is good practise. Does anyone have any suggestions as to how we can achieve the same goal but with lower RAM usage?

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