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  • shared libraries creating a soft link

    - by robUK
    Hello, Redhat 5.5 gcc version 4.1.2 I have a directory call lib, and in that directory I have all the shared libraries (about 30) that we get from our customer as we use their API. We link with this API. directory structure: /usr/CSAPI/lib However, our customer will update their API so we get new libraries, normally about 3 or 4. What I have been doing is when I get new libraries. Is to remove the old one and put in another directory. And replace them with the new libaries in the lib directory. /usr/CSAPI/Old_libs The new and old will have the same name. i.e. libcs.so < old libcs.so < new Is there a better way to manage this? I was thinking of creating a soft line, but as the names are the same, I am not sure that this will work. Many thanks,

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  • bash script to delete old deployments

    - by benjwarner
    I have a directory where our deployments go. A deployment (which is itself a directory) is named in the format: <application-name>_<date> e.g. trader-gui_20091102 There are multiple applications deployed to this same parent directory, so the contents of the parent directory might look something like this: trader-gui_20091106 trader-gui_20091102 trader-gui_20091010 simulator_20091106 simulator_20091102 simulator_20090910 simulator_20090820 I want to write a bash script to clean out all deployments except for the most current of each application. (The most current denoted by the date in the name of the deployment). So running the bash script on the above parent directory would leave: trader-gui_20091106 simulator_20091106 Any help would be appreciated.

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  • Swap partition not recognized (The disk drive with UUID=... is not ready yet or not present)

    - by ladaghini
    I think I had an encrypted swap partition, because I chose to encrypt my home directory during the installation. I believe that's what the line with /dev/mapper/cryptswap1 ... in my /etc/fstab is all about. I did something to bork my swap because on the next boot, I got a message (paraphrased): The disk drive for /dev/mapper/cryptswap1 is not ready yet or not present. Wait to continue. Press S to skip or M to manually recover. (As a side note, pressing S or M seemed to do nothing different from just waiting.) Here's what I've tried: This tutorial on how to fix the swap partition not mounting. However, in the above, the mkswap command fails because the device is busy. So I booted from a live USB, ran GParted to reformat the swap partition (which showed up as an unknown fs type), and chrooted into the broken system to try that tutorial again. I also adjusted /etc/initramfs-tools/conf.d/resume and /etc/fstab to reflect the new UUID generated from formatting the partition as a swap. That still didn't work; instead of /dev/mapper/cryptswap1 not present, "The disk drive with UUID=[swap partition's UUID] is not ready yet or not present..." So I decided to start afresh as though I never had created a swap partition in the first place. From the Live USB, I deleted the swap partition altogether (which, again showed up in GParted as an unknown fs type), removed the swap and cryptswap entries in /etc/fstab as well as removed /etc/initramfs-tools/conf.d/resume and /etc/crypttab. At this point the main system shouldn't be considered broken because there is no swap partition and no instructions to mount one, right? I didn't get any errors during startup. I followed the same instructions to create and encrypt the swap partition, starting with creating a partition for the swap, though I think fdisk said a reboot was necessary to see changes. I was confident the 3rd process above would work, but the problem yet persists. Some relevant info (/dev/sda8 is the swap partition): /etc/fstab file: # /etc/fstab: static file system information. # # Use 'blkid' to print the universally unique identifier for a # device; this may be used with UUID= as a more robust way to name devices # that works even if disks are added and removed. See fstab(5). # # <file system> <mount point> <type> <options> <dump> <pass> proc /proc proc nodev,noexec,nosuid 0 0 # / was on /dev/sda6 during installation UUID=4c11e82c-5fe9-49d5-92d9-cdaa6865c991 / ext4 errors=remount-ro 0 1 # /boot was on /dev/sda5 during installation UUID=4031413e-e89f-49a9-b54c-e887286bb15e /boot ext4 defaults 0 2 # /home was on /dev/sda7 during installation UUID=d5bbfc6f-482a-464e-9f26-fd213230ae84 /home ext4 defaults 0 2 # swap was on /dev/sda8 during installation UUID=5da2c720-8787-4332-9317-7d96cf1e9b80 none swap sw 0 0 /dev/mapper/cryptswap1 none swap sw 0 0 output of sudo mount: /dev/sda6 on / type ext4 (rw,errors=remount-ro) proc on /proc type proc (rw,noexec,nosuid,nodev) sysfs on /sys type sysfs (rw,noexec,nosuid,nodev) none on /sys/fs/fuse/connections type fusectl (rw) none on /sys/kernel/debug type debugfs (rw) none on /sys/kernel/security type securityfs (rw) udev on /dev type devtmpfs (rw,mode=0755) devpts on /dev/pts type devpts (rw,noexec,nosuid,gid=5,mode=0620) tmpfs on /run type tmpfs (rw,noexec,nosuid,size=10%,mode=0755) none on /run/lock type tmpfs (rw,noexec,nosuid,nodev,size=5242880) none on /run/shm type tmpfs (rw,nosuid,nodev) /dev/sda5 on /boot type ext4 (rw) /dev/sda7 on /home type ext4 (rw) /home/undisclosed/.Private on /home/undisclosed type ecryptfs (ecryptfs_check_dev_ruid,ecryptfs_cipher=aes,ecryptfs_key_bytes=16,ecryptfs_unlink_sigs,ecryptfs_sig=cbae1771abd34009,ecryptfs_fnek_sig=7cefe2f59aab8e58) gvfs-fuse-daemon on /home/undisclosed/.gvfs type fuse.gvfs-fuse-daemon (rw,nosuid,nodev,user=undisclosed) output of sudo blkid (note that /dev/sda8 is missing): /dev/sda1: LABEL="SYSTEM" UUID="960490E80490CC9D" TYPE="ntfs" /dev/sda2: UUID="D4043140043126C0" TYPE="ntfs" /dev/sda3: LABEL="Shared" UUID="80F613E1F613D5EE" TYPE="ntfs" /dev/sda5: UUID="4031413e-e89f-49a9-b54c-e887286bb15e" TYPE="ext4" /dev/sda6: UUID="4c11e82c-5fe9-49d5-92d9-cdaa6865c991" TYPE="ext4" /dev/sda7: UUID="d5bbfc6f-482a-464e-9f26-fd213230ae84" TYPE="ext4" /dev/mapper/cryptswap1: UUID="41fa147a-3e2c-4e61-b29b-3f240fffbba0" TYPE="swap" output of sudo fdisk -l: Disk /dev/mapper/cryptswap1 doesn't contain a valid partition table Disk /dev/sda: 320.1 GB, 320072933376 bytes 255 heads, 63 sectors/track, 38913 cylinders, total 625142448 sectors Units = sectors of 1 * 512 = 512 bytes Sector size (logical/physical): 512 bytes / 512 bytes I/O size (minimum/optimal): 512 bytes / 512 bytes Disk identifier: 0xdec3fed2 Device Boot Start End Blocks Id System /dev/sda1 * 2048 409599 203776 7 HPFS/NTFS/exFAT /dev/sda2 409600 210135039 104862720 7 HPFS/NTFS/exFAT /dev/sda3 210135040 415422463 102643712 7 HPFS/NTFS/exFAT /dev/sda4 415424510 625141759 104858625 5 Extended /dev/sda5 415424512 415922175 248832 83 Linux /dev/sda6 415924224 515921919 49998848 83 Linux /dev/sda7 515923968 621389823 52732928 83 Linux /dev/sda8 621391872 625141759 1874944 82 Linux swap / Solaris Disk /dev/mapper/cryptswap1: 1919 MB, 1919942656 bytes 255 heads, 63 sectors/track, 233 cylinders, total 3749888 sectors Units = sectors of 1 * 512 = 512 bytes Sector size (logical/physical): 512 bytes / 512 bytes I/O size (minimum/optimal): 512 bytes / 512 bytes Disk identifier: 0xaf5321b5 /etc/initramfs-tools/conf.d/resume file: RESUME=UUID=5da2c720-8787-4332-9317-7d96cf1e9b80 /etc/crypttab file: cryptswap1 /dev/sda8 /dev/urandom swap,cipher=aes-cbc-essiv:sha256 output of sudo swapon -as: Filename Type Size Used Priority /dev/mapper/cryptswap1 partition 1874940 0 -1 output of sudo free -m: total used free shared buffers cached Mem: 1476 1296 179 0 35 671 -/+ buffers/cache: 590 886 Swap: 1830 0 1830 So, how can this be fixed?

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  • Should Python 2.6 on OS X deal with multiple easy-install.pth files in $PYTHONPATH?

    - by ahd
    I am running ipython from sage and also am using some packages that aren't in sage (lxml, argparse) which are installed in my home directory. I have therefore ended up with a $PYTHONPATH of $HOME/sage/local/lib/python:$HOME/lib/python Python is reading and processing the first easy-install.pth it finds ($HOME/sage/local/lib/python/site-packages/easy-install.pth) but not the second, so eggs installed in $HOME/lib/python aren't added to the path. On reading the off-the-shelf site.py, I cannot for the life of me see why it's doing this. Can someone enlighten me? Or advise how to nudge Python into reading both easy-install.pth files? Consolidating both into one .pth file is a viable workaround for now, so this question is mostly for curiosity value.

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  • Why can't I publish MVC project

    - by Vnuk
    I'm having problems publishing my MVC project. When I do publish and upload everything to web server I get this: [InvalidOperationException: The view 'Index' or its master could not be found. The following locations were searched: ~/Views/Home/Index.aspx ~/Views/Home/Index.ascx ~/Views/Shared/Index.aspx ~/Views/Shared/Index.ascx] Weird thing is that Index.aspx exists in ~/Views/Home/, but IIS cannot find it there. If I copy entire project to web server and let asp.net compile it on the fly it works like a charm. My routing code: routes.MapRoute( _ "Default", _ "{controller}/{action}/{id}", _ New With {.controller = "Home", .action = "Index", .id = ""} _ ) routes.MapRoute("Root", "", New With {.controller = "Home", .action = "Index", .id =""}) I'm using IIS7 on Windows 2008 Web server. ASP.NET MVC 1.0, Visual Studio 2008. I've tried it local with IIS7 on Windows 7 - same error.

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  • Subversion terminology. Difference between projects, modules and root directories

    - by aioobe
    I'm setting up a repository for me and some colleagues. I have a subversion repository at hand, and all required rights. The usual directory-skeleton has been set up for me (branches, tags and trunk). Now I'm about to create a directory for me and my colleagues to put our files in. I'm quite sure the right place to put it is in trunk. Now here and there in tutorials, I see terms like "modules" and "projects" such as in Checking Out a Project - svn checkout svn checkout http://host_name/svn_dir/repository_name/project/trunk proj Is proj in the above line some glorified directory in trunk? Should I do something else than a checkout on trunk, mkdir and then commit when creating a directory for me and my colleagues? Whats the difference between a project, a directory in trunk and a module?

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  • Avoid flickering on mouse over

    - by GigaPr
    Hi I have a simple link in a menu <a id="Home" href="Amico-Bio-Home-Page"></a> to which i apply the following style #Home{ background-image:url(../Images/Menu/home.png); background-repeat:no-repeat; border:none; display:block; height:70px; text-decoration:none; width:78px; float:left; padding:0 7px; } #Home:hover { background-image: url(../Images/Menu/homeOn.png); } when i go over the link the images are swapped. while swapping the images the link disappear for an instant. Do you know any way to avoid it? thanks

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  • HttpContext User value changing on its own?

    - by larryq
    Hi everyone, I'm working on an ASP.Net 2.0 application and am having a strange issue involving the HttpContext User. It appears to be changing on its own when I go to a particular page/directory. All of our pages inherit from a base page. In that base page's Page_Load() method we run an authorization check to see if the user can see the page they're going to. We retrieve the user to check against with this code: GenericPrincipal objPrincipal = (GenericPrincipal)Context.User; When I go to this unusual directory the User value isn't me, it's some other username I've never heard of. This username isn't authorized to see these pages, so authorization fails. This mysterious directory isn't a virtual web, just a regular directory in our website, however I've noticed it has its own Web.Config file. I'm guessing that's a cause of the trouble here. My question is, how can I investigate this further, in determining what's changing the User value when I go to this directory?

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  • Problem with running the Nutch command from PHP exec()

    - by Annibigi
    My Nutch directory lies in /home/myserv/nutch/nutch-1.0/ My php applictaion is in the diretcory /home/myserv/www/ Theres a a php file in my /home/myserv/www/ diretcory that runs a exec command to run a nutch command.PHP code is like : $output = exec("bin/nutch all"); When I run the command from the command line I need to be in the "/home/myserv/nutch/nutch-1.0/" directory When i'm trying to run it through the php exec() ,I just can seems to make it execute. I have tried giving the ful path like (below) but nothing works :( $output = exec("/home/myserv/nutch/nutch-1.0/bin/nutch all"); Desperately looking for help

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  • Python `.pth` files and using relative paths

    - by kRON
    I have a lot of development versions of packages installed with virtualenv under the default /src directory in the environment. Normally, I decided to do the development of my project under the /src directory afterwards. To add my directory to the Python path, I decided to eschew from using any absolute paths, since I'm going to have to move the project around with my friends. It's a Django application, so I was happy with putting environment.pth under the root that contained the path to my project and a wsgi in the same directory would call the sites module to parse environment.pth. All good. I was also looking to move the .pth file into site-packages, but I'm having trouble with relative paths that move up the directory tree. For: /env /lib /site-pacakges /src /myproject So, the .pth entry in site-packages to myproject should look like ../../src/myproject, but this doesn't seem to be working for me on Windows.

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  • Turn off depreciated errors php 5.3

    - by atwellpub
    Hello, My server is running php 5.3 and My wordpress install is spitting these errors out on me causing the my session_start() to break. Deprecated: Assigning the return value of new by reference is deprecated in /home//public_html/hub/wp-settings.php on line 647 Deprecated: Assigning the return value of new by reference is deprecated in /home//public_html/hub/wp-settings.php on line 662 Deprecated: Assigning the return value of new by reference is deprecated in /home//public_html/hub/wp-settings.php on line 669 Deprecated: Assigning the return value of new by reference is deprecated in /home//public_html/hub/wp-settings.php on line 676 Deprecated: Assigning the return value of new by reference is deprecated in /home//public_html/hub/wp-settings.php on line 712 This is annoying, but I do not want to turn off on screen error reporting. How do I disable these bothersome depreciated warnings? Running Wordpress 2.9.2. Gracious!

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  • How to accomplish "AuthType None" in Apache 2.2

    - by Technorati
    http://httpd.apache.org/docs/trunk/mod/mod_authn_core.html#authtype talks about "AuthType None", and has an awesome example of exactly what I need to do - unfortunately, it appears to be new to 2.3/2.4. Is there any equivalent feature in 2.2? The authentication type None disables authentication. When authentication is enabled, it is normally inherited by each subsequent configuration section, unless a different authentication type is specified. If no authentication is desired for a subsection of an authenticated section, the authentication type None may be used; in the following example, clients may access the /www/docs/public directory without authenticating: <Directory /www/docs> AuthType Basic AuthName Documents AuthBasicProvider file AuthUserFile /usr/local/apache/passwd/passwords Require valid-user </Directory> <Directory /www/docs/public> AuthType None Require all granted </Directory>

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  • install CakePHP on Mac osx: apache problems

    - by ed209
    First time cake user and I'm having real apache problems. For some reason the .htaccess is trying to find File does not exist: /Library/WebServer/Documents/Users but there is no such directory as Users. I have tried setting up the following also: /etc/apache2/extra/httpd-vhosts.conf <VirtualHost *:80 > DocumentRoot "/Users/username/Sites/mysite/app/webroot" ServerName mysite.dev ServerAlias www.mysite.dev mysite.dev *.mysite.dev <Directory "/Users/username/Sites/mysite/app/webroot"> Options Indexes FollowSymLinks AllowOverride All </Directory> </VirtualHost> /etc/hosts 127.0.0.1 mysite.dev /etc/apache2/users/username.conf <Directory "/Users/username/Sites/"> Options Indexes MultiViews FollowSymlinks AllowOverride All Order allow,deny Allow from all </Directory> That also hasn't worked, but with a different error Failed opening required 'cake/libs/cache/file.php' Although I'd rather not use virtual hosts, and just run it off localhost

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  • zsh for loop exclusion

    - by ABach
    This is somewhat of a simple question, but for the life of me, I cannot figure out how to exclude something from a zsh for loop. For instance, let's say we have this: for $package in /home/user/settings/* do # do stuff done Let's say that in /home/user/settings/, there is a particular directory ("os") that I want to ignore. Logically, I tried the following variations: for $package in /home/user/settings/^os (works w/ "ls", but not with a foor loop) for $package in /home/user/settings/*^os for $package in /home/user/settings/^os* ...but none of those seem to work. Could someone steer my syntax in the right direction?

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  • Installed Android on Mac, cannot find SDK

    - by David Matuszek
    Using Mac OS X 10.6.2, Eclipse SDK 3.5.2. I installed the Android plugin, following the instructions at: http://developer.android.com/sdk/eclipse-adt.html In the next section (step #3) it says: For the SDK Location in the main panel, click Browse... and locate your downloaded SDK directory. I cannot find such a directory. When I try some other directory, it says the directory has no 'tools' folder, so I've searched for a 'tools' folder, but none of those found (of 15 or 20) appear to be Android. Where is this directory??? --Dave [email protected]

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  • MVC 2 Beta DefaultControllerFactory with Areas

    - by stoto
    Why default factory WON'T return full name of the controllers (with namespaces)? I'm using Service Locator and autofac. using System.Web.Mvc; using Microsoft.Practices.ServiceLocation; namespace Application.Core.MVC { public override IController CreateController(System.Web.Routing.RequestContext requestContext, string **controllerName**) { return ServiceLocator.Current.GetInstance<IController>(controllerName); } } I had two home controllers (one under area Blog) http://localhost/Home http://localhost/Blog/Home controllerName return only "Home" without full qualified name for both in above code. This creates a problem when I try to regiser controllers' names for dependency injection. Here is how I register controllers right now according to this situation. Even this brings up the pages without exception. But When I access http://localhost/Home, both controllers invoked regardlessly. foreach (var tp in currentAssemblyControllersTypes) builder.Register(tp).FactoryScoped().Named(tp.Name.Replace("Controller", "")); Anyone can help?Thanks.

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  • ZeroMQ Java Installation Problem

    - by Ivan
    Hi everyone, I'm trying to install ZeroMQ's Java library but I've been having problem. First error was ./configure complained about JAVA_HOME which everything seemed to be fine but I couldn't manage to solve it but I've found a particular solution in ZeroMQ's chat logs. The suggested solution was; JAVA_HOME="/System/Library/Frameworks/JavaVM.framework/Home" ./configure However it doesn't work for me. The error message I've been receiving is checking for jni.h in /Library/Java/Home/include... configure: error: cannot find jni.h in /Library/Java/Home/include. I've tried JAVA_HOME="/System/Library/Frameworks/JavaVM.framework/Home" ./configure and JAVA_HOME="/System/Library/Frameworks/JavaVM.framework/Versions/1.6/Home" ./configure as well but still no luck. I'd like to hear StackOverflowers' thoughts about how I can solve this. Thanks.

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  • Joining remote paths in Java

    - by Mickael Marrache
    I'm using the FTP library provided by Apache (commons-net). I want to check if a file exists on the FTP server so I use the listFiles method of FTPClient: ftpClient.listFiles(remoteFileDir + "\\" + fileName); The current directory is the FTP server root directory. So, the value of remoteFileDir is a path relative to this root directory. My question concerns the merge between the remote directory path and the file name. What is the right way to do it? For a local file, I would do: File file = new File(remoteFileDir,fileName); but here it doesn't work since when I call file.getAbsolutePath(), I get an absolute path for the file in the local current directory which is not what I want. Also, I guess the merging has been done according to my local environment. PS: I looked at How are paths determined on a remote machines? but it doesn't help me. Thanks

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  • Configurator Scan not picking up views

    - by mxmissile
    New to Py and Python. I'm trying to get pyramid Configurator scan to find my views, but I seem to be missing something, it's not picking up my "view" index here are my files: app.py from wsgiref.simple_server import make_server from pyramid.config import Configurator if __name__ == '__main__': config = Configurator() config.add_route('home', '/') config.scan() app = config.make_wsgi_app() server = make_server('0.0.0.0', 6543, app) server.serve_forever() and index.py from pyramid.view import view_config from pyramid.response import Response @view_config(route_name='home') def index(request): print'Incoming request' return Response('<body><h1>Home</h1></body>') Its returning a 404. However, if I remove config.scan() and add the view manually it works fine. from wsgiref.simple_server import make_server from pyramid.config import Configurator from index import index if __name__ == '__main__': config = Configurator() config.add_route('home', '/') config.add_view(index, route_name='home')

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  • asp.net mvc route clashing with physical path in IIS7

    - by Andrew Bullock
    I'm messing about with controller organisation and I've hit a problem. If I have the following physical structure /Home/HomeController.cs /Home/Index.aspx /Home/About.aspx and I request the URI: /Home/Index I get a 403 Directory Listing Denied :( (im using a custom IControllerFactory and IViewEngine to look in this non-default path) Why is this happening? (I know the 403 is because its hitting the /Home folder, but why is it hitting the folder?) Why doesn't the UrlRoutingModule rewrite the route and let the controller pick up the request? Application_BeginRequest fires, but then it seems to pass control back to IIS to try and serve from the filesystem. Is it the UrlRoutingModule that defaults to a physical path if it exists before rewriting? Is there a way to make this work? N.B. Please don't suggest relocating my controllers etc. I know this is an obvious option, but that isn't the question ;) Using IIS7 In Integrated Mode Thanks

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  • getimagezise Error pasing filename

    - by Talha Bin Shakir
    Hi, I am using getimagesize() to get teh size of my image. I have image in my sub-directory when i am passing file name with sub-directory i ma facing an error: There is no such file or directory here is my Code: <?PHP function resize($img,$max_w){ $max_h=$max_w; list($img_w,$img_h) = getimagesize($img); $f = min($max_w/$img_w, $max_h/$img_h, 1); $w = round($f * $img_w); $h = round($f * $img_h); return array($w,$h); } $filename="user_img/"."1256115556.jpg"; $resize=resize($filename,667); $w=$resize[0]; $h=$resize[1]; ?> instead of this when i passing $filename="1256115556.jpg"; file from my main directory the function is running perfectly. So please help me, How to pass file with sub-directory.

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  • How can I store and access SQLite databases from a central location?

    - by Brian Ramsay
    I have installed SQLite on my UNIX system, and am planning on accessing it from PHP. However, the database is created in the directory I initialize it in, and if a script runs in a different directory a new database is created in the same directory. Is there an option for SQLite (or the PHP wrappers) to create the databases in one location, and have those databases accessible just by name outside of that directory? Ideally, I'd like to be able to do something like $db=new SQLiteDatabase("db.test"); in any directory and have it reference the same database, if that makes sense.

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  • Creating a file/folder structure and zipping it up?

    - by makeee
    I have a directory of image files and I need a php script or shell script that will rename them, create a structure of nested directories, and then insert each image into a specified place in the directory hierarchy. Ideally I would just specify a parent directory for each file and a parent directory for each directory and it would build it. And then finally, I need the script to zip up the whole thing. There's probably not an existing php class that will do all this for me, but if anyone knows of a php class or other script available online that would handle a lot of this logic that would be great.

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  • How to Use a Windows App with Embeded files and folders to copy to a destination. In C#

    - by Mark Sweetman
    I am trying to write a small application, whose only purpose is to copy some folders and .cs source files into a user specified Directory, I can do it easy enough by simply having the application look for the files and folders in its own install directory then copy them to thier destination Directory, but I was wondering if its possible to Embed the Folders and Files into the Application, so that when you run the application it creates or copies the folders and files from the exe app directly to the install directory, rather than searching for them in the apps install directory then copying them over. Basically Im trying to only have a single exe file rather than having an exe file and a bunch of folders and files along side it. Is this possible to do with just a Windows Form App without using an actual Installer Class?

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  • 'Make' command compiling errors

    - by G_T
    Im trying to locally install a program which is written in C++. I have downloaded the program and am attempting to use the "make" command to compile the program as the programs instructions dictate. However when I do I get this error: /usr/include/stdc-predef.h:30:26: fatal error: bits/predefs.h: No such file or directory compilation terminated. Looking around on the internet some people seem to address this problem by sudo apt-get install libc6-dev-i386 I checked to see if this package was installed and it was not. When I try to install it I get E: Unable to locate package libc6-dev-i386 I have already run sudo apt get update Im sure this is a rookie question but any help is appreciated, I'm running 13.10 32-bit. UPDATE: I've tried other suggestions I've found on similar error. All I have managed is a different but similar error. Here is what I get. Geoffrey@Geoffrey-Latitude-E6400:/usr/local/src/trinityrnaseq_r2013_08_14$ make Using gnu compiler for Inchworm and Chrysalis cd Inchworm && (test -e configure || autoreconf) \ && ./configure --prefix=`pwd` && make install checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking for g++... g++ checking for C++ compiler default output file name... a.out checking whether the C++ compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking for style of include used by make... GNU checking dependency style of g++... gcc3 checking for library containing cos... none required configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating config.h config.status: config.h is unchanged config.status: executing depfiles commands make[1]: Entering directory `/usr/local/src/trinityrnaseq_r2013_08_14/Inchworm' Making install in src make[2]: Entering directory `/usr/local/src/trinityrnaseq_r2013_08_14/Inchworm/src' if g++ -DHAVE_CONFIG_H -I. -I. -I.. -pedantic -fopenmp -Wall -Wextra -Wno-long-long -Wno-deprecated -m64 -g -O2 -MT Fasta_entry.o -MD -MP -MF ".deps/Fasta_entry.Tpo" -c -o Fasta_entry.o Fasta_entry.cpp; \ then mv -f ".deps/Fasta_entry.Tpo" ".deps/Fasta_entry.Po"; else rm -f ".deps/Fasta_entry.Tpo"; exit 1; fi In file included from Fasta_entry.hpp:4:0, from Fasta_entry.cpp:1: /usr/include/c++/4.8/string:38:28: fatal error: bits/c++config.h: No such file or directory #include <bits/c++config.h> ^ compilation terminated. make[2]: *** [Fasta_entry.o] Error 1 make[2]: Leaving directory `/usr/local/src/trinityrnaseq_r2013_08_14/Inchworm/src' make[1]: *** [install-recursive] Error 1 make[1]: Leaving directory `/usr/local/src/trinityrnaseq_r2013_08_14/Inchworm' make: *** [inchworm] Error 2

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