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  • How to create a "Clustergram" plot ? (in R)

    - by Tal Galili
    Hi all, I came across this interesting website, with an idea of a way to visualize a clustering algorithm called "Clustergram": I am not sure how useful this really is, but in order to play with it I would like to reproduce it with R, but am not sure how to go about doing it. How would you create a line for each item so it would stay consistent throughout the different number of clusters? Here is an example code/data to play with for potential answer: hc <- hclust(dist(USArrests), "ave") plot(hc)

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  • perl dynamic path given to 'use lib'

    - by Ed Hyer
    So, my code (Perl scripts and Perl modules) sits in a tree like this: trunk/ util/ process/ scripts/ The 'util' directory has, well, utilities, that things in the 'process/' dir need. They get access like this: use FindBin; use lib "$FindBin::Bin/../util"; use UtilityModule qw(all); That construct doesn't care where you start, as long as you're at the same level in the tree as "util/". But I decided that 'scripts/' was getting too crowded, so I created scripts/scripts1 scripts/scripts2 Now I see that this doesn't work. If I run a script 'trunk/scripts/scripts1/call_script.pl', and it calls '/trunk/process/process_script.pl', then 'process_script.pl' will fail trying to get the routines from UtilityModule(), because the path that FindBin returns is the path of the top-level calling script. The first ten ways I thought of to solve this all involved something like: use lib $path_that_came_from_elsewhere; but that seems to be something Perl doesn't like to do, except via that FindBin trick. I tried some things involving BEGIN{} blocks, but i don't really know what I'm doing there, and will likely just end up refactoring. But if someone has some clever insight into this type of problem, this would be a good chance to earn some points!

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  • Interacting with system commands using a web dev language

    - by Jamie
    Hi all, First of all, sorry for the vague title. Let me explain. At work we're currently using SunGrid I've been assigned a project to create a web interface wrapper for interacting with the engine. i.e. displaying users jobs, submitting jobs via a nice GUI etc. (most of the sgrid commands output xml which is nice) My question for you chaps is the following: What web dev language would you use to interact with the system? i.e. use the language to do a system call and evaluate the response. I'm not after an argument on which language is best, I just would like to know which language is specifically good for interacting with the system and is also good for web dev.

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  • Techniques for sharing a value among classes in a program

    - by Kenneth Cochran
    I'm using Environment.GetFolderPath(Environment.SpecialFolder.CommonApplicationData) + "\MyProgram" As the path to store several files used by my program. I'd like to avoid pasting the same snippet of code all over the my applcation. I need to ensure that: The path cannot be accidentally changed once its been set The classes that need it have access to it. I've considered: Making it a singleton Using constructor dependency injection Using property dependency injection Using AOP to create the path where its needed. Each has pros and cons. The singleton is everyone's favorite whipping boy. I'm not opposed to using one but there are valid reasons to avoid it if possible. I'm already heavily using constructor injection through Castle Windsor. But this is a path string and Windsor doesn't handle system type dependencies very gracefully. I could always wrap it in a class but that seems like overkill for something as simple as a passing around a string value. In any case this route would add yet another constructor argument to each class where it is used. The problem I see with property injection in this case is that there is a large amount of indirection from the where the value is set to where it is needed. I would need a very long line of middlemen to reach all the places where its used. AOP looks promising and I'm planning on using AOP for logging anyway so this at least sounds like a simple solution. Is there any other options I haven't considered? Am I off base with my evaluation of the options I have considered?

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  • Static Class Variables in Dynamic Library and Main Program

    - by Paul
    I am working on a project that has a class 'A' that contains a static stl container class. This class is included in both my main program and a .so file. The class uses the default(implicit, not declared) constructor/destructor. The main program loads the .so file using dlopen() and in its destructor, calls dlclose(). The program crashes after main exits when glibc calls the destructor for the static class member variable. The problem appears to be that when dlclose() is called, the destructor for the static variable is called, then when main exits() glibc also calls the destructor, resulting in a double free. I have 2 questions, namely: 1) In this particular case, why are there not two copies of the static variable(yes i know that sounds somewhat ridiculous, but since both the main program and .so file have a separately compiled 'A', shouldn't they each have one?) 2) Is there any way to resolve this issue without re-writing class 'A' to not contain static member variables?

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  • OS X contains heapsort in stdlib.h which conflicts with heapsort in sort library

    - by CryptoQuick
    I'm using Ariel Faigon's sort library, found here: http://www.yendor.com/programming/sort/ I was able to get all my code working on Linux, but unfortunately, when trying to compile with GCC on Mac, its default stdlib.h contains another heapsort, which unfortunately results in a conflicting types error. Here's the man page for Apple heapsort: http://developer.apple.com/library/mac/#documentation/Darwin/Reference/ManPages/man3/heapsort.3.html Commenting out the heapsort in the sort library header causes a whole heap of problems. (pardon the pun) I also briefly thought of commenting out my use of stdlib.h, but I use malloc and realloc, so that won't work at all. Any ideas?

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  • .net 4.0 creating a MemoryMappedFile with global context throws exception

    - by Christoph
    Hi all, I want to create a global MemoryMappedFile in C# 4.0 using following call: string MemoryMappedFileName = "Global\\20E9C857-C944-4C35-B937-A5941034D073"; ioBuffer = MemoryMappedFile.CreateNew(MemoryMappedFileName, totalIoBufferSize); This always throws following exception "System.UnauthorizedAccessException: Access to the path is denied." If I remove the "Global\" identifier from the memorymapped filename it works but I need a memory mapped file existing accross terminal sessions. thanks, Christoph

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  • Which number of processes will give me the best performance ?

    - by Maarten
    I am doing some expensive caluations right now. It is one programm, which I run several instances of at the same time. I am running them under linux on a machine with 4 cpus with 6 cores each. The cpus are Intel Xeon X5660, which support hyper thearting. (That's some insane hardware, huh?) Right now I am running 24 processes at once. Would it be better to run more, b/c of HT ?

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  • Distributed datastore

    - by Julien Genestoux
    We're trying to add some kind of persistence in our app. The app generates about 250 entries per second. Each of these entries belong to one of 2M files. For each file, we want to keep the last 10 entries, so we can look them up later. The way our client application works : it gets a stream of all the data it fetches the right file (GET) it adds the new content it saves the file back (PUT) We're looking for an efficient way to store this data that can scale horizontally as the amount of data we're getting is doubling every few weeks. We initially looked at S3. It works fine, but becomes very expensive very fast ($1000 monthly just in PUT operations!) We then gave a shot at Riak. But it seems we can't get more than 60 write/sec on each node, which is very very slow. Any other solution out there?

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  • Naming a typedef for a boost::shared_ptr<const Foo>

    - by Blair Zajac
    Silly question, but say you have class Foo: class Foo { public: typedef boost::shared_ptr<Foo> RcPtr; void non_const_method() {} void const_method() const {} }; Having a const Foo::RcPtr doesn't prevent non-const methods from being invoked on the class, the following will compile: #include <boost/shared_ptr.hpp> int main() { const Foo::RcPtr const_foo_ptr(new Foo); const_foo_ptr->non_const_method(); const_foo_ptr->const_method(); return 0; } But naming a typedef ConstRcPtr implies, to me, that the typedef would be typedef const boost::shared_ptr<Foo> ConstRcPtr; which is not what I'm interested in. An odder name, but maybe more accurate, is RcPtrConst: typedef boost::shared_ptr<const Foo> RcPtrConst; However, Googling for RcPtrConst gets zero hits, so people don't use this as a typedef name :) Does anyone have any other suggestions?

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  • Does changing the order of class private data members breaks ABI

    - by Dmitry Yudakov
    I have a class with number of private data members (some of them static), accessed by virtual and non-virtual member functions. There's no inline functions and no friend classes. class A { int number; string str; static const int static_const_number; public: // got virtual and non-virtual functions, working with these memebers virtual void func1(); void func2(); // no inline functions or friends }; Does changing the order of private data members breaks ABI in this case? class A { string str; static const int static_const_number; int number; // <-- integer member moved here ... };

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  • Why aren't these shared_ptrs pointing to the same container?

    - by BeeBand
    I have a class Model: class Model { ... boost::shared_ptr<Deck> _deck; boost::shared_ptr<CardStack> _stack[22]; }; Deck inherits from CardStack. I tried to make _stack[0] point to the same thing that _deck points to by going: { _deck = boost::shared_ptr<Deck>(new Deck()); _stack[0] = _deck; } It seems that the assignment to _deck of _stack[0] results in a copy of _deck being made. How can I get them to point to the same thing?

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  • A good free BON diagram generator?

    - by Audel
    Hello I need to create a static BON diagram which represents a set of clusters, classes and their relationships(inheritance and client-supplier). Does anyone know a good diagram generator I can get for free? The BON diagram is similar to the C sharp's class diagram but this one is generated by Eiffel studio =/ any diagram generators recommendations are welcome ;D Thanks in advance .

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  • Accomplishing boost::shared_from_this() in constructor via boost::shared_from_raw(this)

    - by Kyle
    Googling and poking around the boost code, it appears that it's now possible to construct a shared_ptr to this in a constructor, by inheriting from enable_shared_from_raw and calling shared_from_raw(this) Is there any documentation or examples of this? I'm finding nothing with google. Why am I not finding any useful buzz on this on google? I would have thought using shared_from_this in a constructor would be a hot/desirable item. Should I be inheriting from both enable_shared_from_raw and enable_shared_from_this, and restricting my usage of enable_shared_from_raw when I have to? If so, why? Is there a performance hit with shared_from_raw?

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  • Different Versions of an application in same java application server

    - by Cem
    Hi, We are utilizing citrix netscalar with more than 20 glassfish java application servers. Unfortunately we have to remove previous application before deploying a new version of it since we have same context for these two different application. This error-prone process leads some problems due to lack of attention in builds or other problems. In an urgent case, we simply want to redirect to all traffic to previous application. What is the best practice to run different version of an application in a substantial number of servers in same time? Thanks

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  • Is there any boost-independent version of boost/tr1 shared_ptr

    - by Artyom
    I'm looking for independent implementation of boost/tr1 shared_ptr, weak_ptr and enable_shared_from_this. I need: Boost independent very small implementation of these features. I need support of only modern compilers like GCC-4.x, MSVC-2008, Intel not things like MSVC6 or gcc-3.3 I need it to be licensed under non-copyleft LGPL compatible license like Boost/Mit/3-clause BSD. So I can include it in my library. Note - it is quite hard to extract shared_ptr from boost, at least BCP gives about 324 files...

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  • shared_ptr requires complete type; cannot use it with lua_State*

    - by topright
    Hello! I'm writing a C++/OOP wrapper for Lua. My code is: class LuaState { boost::shared_ptr<lua_State> L; LuaState(): L( luaL_newstate(), LuaState::CustomDeleter ) { } } The problem is lua_State is incomplete type and shared_ptr constructor requires complete type. And I need safe pointer sharing. (Funny thing boost docs say most functions do not require complete type, but constructor requires, so there is no way of using it. http://www.boost.org/doc/libs/1_42_0/libs/smart_ptr/smart_ptr.htm) Can can I solve this? Thank you.

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  • Where the hell is shared_ptr!?!

    - by Jake
    I am so frustrated right now after several hours trying to find where the hell is shared_ptr located at. None of the examples i see show complete code to include the headers for shared_ptr (and working). simply stating "std" "tr1" and "" is not helping at all! I have downloaded boosts and all but still it doesn't show up! Can someone help me by telling exactly where to find it? Thanks for letting me vent my frustrations!

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  • Host Primary Domain from a subfolder

    - by TandemAdam
    I am having a problem making a sub directory act as the public_html for my main domain, and getting a solution that works with that domains sub directories too. My hosting allows me to host multiple sites, which are all working great. I have set up a subfolder under my ~/public_html/ directory called /domains/, where I create a folder for each separate website. e.g. public_html domains websiteone websitetwo websitethree ... This keeps my sites nice and tidy. The only issue was getting my "main domain" to fit into this system. It seems my main domain, is somehow tied to my account (or to Apache, or something), so I can't change the "document root" of this domain. I can define the document roots for any other domains ("Addon Domains") that I add in cPanel no problem. But the main domain is different. I was told to edit the .htaccess file, to redirect the main domain to a subdirectory. This seemed to work great, and my site works fine on it's home/index page. The problem I'm having is that if I try to navigate my browser to say the images folder (just for example) of my main site, like this: www.yourmaindomain.com/images/ then it seems to ignore the redirect and shows the entire server directory in the url, like this: www.yourmaindomain.com/domains/yourmaindomain/images/ It still actually shows the correct "Index of /images" page, and show the list of all my images. Here is an example of my .htaccess file that I am using: RewriteEngine on RewriteCond %{HTTP_HOST} ^(www.)?yourmaindomain.com$ RewriteCond %{REQUEST_URI} !^/domains/yourmaindomain/ RewriteCond %{REQUEST_FILENAME} !-f RewriteCond %{REQUEST_FILENAME} !-d RewriteRule ^(.*)$ /domains/yourmaindomain/$1 RewriteCond %{HTTP_HOST} ^(www.)?yourmaindomain.com$ RewriteRule ^(/)?$ domains/yourmaindomain/index.html [L] Does this htaccess file look correct? I just need to make it so my main domain behaves like an addon domain, and it's subdirectories adhere to the redirect rules.

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