Original question

I use Launch4j as a wrapper for my Java application under Windows 7, which, to my understanding, in essence forks an instance of javaw.exe that in turn interprets the Java code. As a result, when attempting to pin my application to the task bar, Windows instead pins javaw.exe. Without the required command line, my application will then not run.

As you can see, Windows also does not realize that Java is the host application: the application itself is described as "Java(TM) Platform SE binary".

I have tried altering the registry key HKEY_CLASSES_ROOT\Applications\javaw.exe to add the value IsHostApp. This alters the behavior by disabling pinning of my application altogether; clearly not what I want.

After reading about how Windows interprets instances of a single application (and a phenomenon discussed in this question), I became interested in embedding a Application User Model ID (AppUserModelID) into my Java application.

I believe that I can resolve this by passing a unique AppUserModelID to Windows. There is a shell32 method for this, SetAppID(). (Or SetCurrentProcessExplicitAppUserModelID?) Is it possible to call it via JNI? If so, would this even resolve the issue?

On a side note, I was curious if any of the APIs discussed in this article could be implemented for a Java application.

Edit after implementing JNA, as Gregory Pakosz suggested

I've now implemented the following in an attempt to have my application recognized as a separate instance of javaw.exe:

NativeLibrary lib;
try {
    lib = NativeLibrary.getInstance("shell32");
} catch (Error e) {
    Logger.out.error("Could not load Shell32 library.");
    return;
}
Object[] args = { "Vendor.MyJavaApplication" };
String functionName = "SetCurrentProcessExplicitAppUserModelID";
try {
    Function function = lib.getFunction(functionName);
    int ret = function.invokeInt(args);
    if (ret != 0) {
        Logger.out.error(function.getName() + " returned error code "
                + ret + ".");
    }
} catch (UnsatisfiedLinkError e) {
    Logger.out.error(functionName + " was not found in "
            + lib.getFile().getName() + ".");
    // Function not supported
}

This appears to have no effect, but the function returns without error. Diagnosing why is something of a mystery to me. Any suggestions?

Working implementation

The final implementation that worked is the answer to my follow-up question concerning how to pass the AppID using JNA.

I had awarded the bounty to Gregory Pakosz' brilliant answer for JNI that set me on the right track.