how to handle an asymptote/discontinuity with Matplotlib

Posted by Geddes on Stack Overflow See other posts from Stack Overflow or by Geddes
Published on 2010-03-29T18:27:09Z Indexed on 2010/03/29 22:33 UTC
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Hello all. Firstly - thanks again for all your help. Sorry not to have accepted the responses to my previous questions as I did not know how the system worked (thanks to Mark for pointing that out!). I have since been back and gratefully acknowledged the kind help I have received.

My question: when plotting a graph with a discontinuity/asymptote/singularity/whatever, is there any automatic way to prevent Matplotlib from 'joining the dots' across the 'break'? (please see code/image below). I read that Sage has a [detect_poles] facility that looked good, but I really want it to work with Matplotlib.

Thanks and best wishes, Geddes

import matplotlib.pyplot as plt 
import numpy as np
from sympy import sympify, lambdify
from sympy.abc import x

fig = plt.figure(1) 
ax = fig.add_subplot(111) 

# set up axis 
ax.spines['left'].set_position('zero') 
ax.spines['right'].set_color('none') 
ax.spines['bottom'].set_position('zero') 
ax.spines['top'].set_color('none') 
ax.xaxis.set_ticks_position('bottom') 
ax.yaxis.set_ticks_position('left') 

# setup x and y ranges and precision
xx = np.arange(-0.5,5.5,0.01) 

# draw my curve 
myfunction=sympify(1/(x-2))
mylambdifiedfunction=lambdify(x,myfunction,'numpy')
ax.plot(xx, mylambdifiedfunction(xx),zorder=100,linewidth=3,color='red') 

#set bounds 
ax.set_xbound(-1,6)
ax.set_ybound(-4,4) 

plt.show()

alt text

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