I have three tables. AvailableOptions and PlanTypeRef with a ManyToMany association table called AvailOptionPlanTypeAssoc. The trimmed down schemas look like this

CREATE TABLE [dbo].[AvailableOptions](
  [SourceApplication] [char](8) NOT NULL,
  [OptionId] [int] IDENTITY(1,1) NOT NULL,
  ...
)

CREATE TABLE [dbo].[AvailOptionPlanTypeAssoc](
  [SourceApplication] [char](8) NOT NULL,
  [OptionId] [int] NOT NULL,
  [PlanTypeCd] [char](2) NOT NULL,
)

CREATE TABLE [dbo].[PlanTypeRef](
  [PlanTypeCd] [char](2) NOT NULL,
  [PlanTypeDesc] [varchar](32) NOT NULL,
)

And the Java code looks like this.

//AvailableOption.java
@ManyToMany(cascade={CascadeType.ALL}, fetch=FetchType.EAGER)
@JoinTable(
  name = "AvailOptionPlanTypeAssoc",
  joinColumns = { @JoinColumn(name = "OptionId"),
                  @JoinColumn(name="SourceApplication")},
  inverseJoinColumns=@JoinColumn(name="PlanTypeCd"))
List<PlanType> planTypes = new ArrayList<PlanType>();

//PlanType.java
@ManyToMany
@JoinTable(
  name = "AvailOptionPlanTypeAssoc",
  joinColumns = { @JoinColumn(name = "PlanTypeCd")},
  inverseJoinColumns={@JoinColumn(name="OptionId"),
                      @JoinColumn(name="SourceApplication")})
List<AvailableOption> options = new ArrayList<AvailableOption>();

The problem arises when making a select on AvailableOptions it joins back onto itself. Note the following SQL code from the backtrace. The second inner join should be on PlanTypeRef.

SELECT t0.OptionId, 
  t0.SourceApplication, 
  t2.PlanTypeCd, 
  t2.EffectiveDate, 
  t2.PlanTypeDesc, 
  t2.SysLstTrxDtm, 
  t2.SysLstUpdtUserId, 
  t2.TermDate 
FROM dbo.AvailableOptions t0 
  INNER JOIN dbo.AvailOptionPlanTypeAssoc t1 
    ON t0.OptionId = t1.OptionId AND t0.SourceApplication = t1.SourceApplication 
  INNER JOIN dbo.AvailableOptions t2 
    ON t1.PlanTypeCd = t2.PlanTypeCd 
WHERE (t0.SourceApplication = ? AND t0.OptionType = ?) 
ORDER BY t0.OptionId ASC, t0.SourceApplication ASC 
[params=(String) testApp, (String) junit0]}