Visualizing Undirected Graph That's Too Large for GraphViz?

Posted by Gabe on Stack Overflow See other posts from Stack Overflow or by Gabe
Published on 2008-10-26T22:31:59Z Indexed on 2010/04/29 21:17 UTC
Read the original article Hit count: 622

Filed under:

graph

|

graphviz

|

graph-layout

Hi Everyone, I was wondering if anyone has any advice for rendering an undirected graph with 178,000 nodes and 500,000 edges. I've tried Neato, Tulip, and Cytoscape. Neato doesn't even come remotely close, and Tulip and Cytoscape claim they can handle it but don't seem to be able to. (Tulip does nothing and Cytoscape claims to be working, and then just stops.)

Does anyone have any ideas? I'd just like a vector format file (ps or pdf) with a remotely reasonable layout of the nodes.

Thanks!

© Stack Overflow or respective owner

Related posts about graph

C++: Error in Xcode; "Graph::Coordinate::Coordinate()", referenced from: ...

as seen on Stack Overflow - Search for 'Stack Overflow'
In a program I am writing, I wrote for two classes (Coordinate, and Graph), with one of them taking the other as constructor arguments. When I try to compile it I get the following error for Graph.cpp: Undefined symbols: "Graph::Coordinate::Coordinate(double)", referenced from: Graph::Graph()… >>> More
How to create Line Graph and Bar graph on same parameters in asp.net

as seen on C# Corner - Search for 'C# Corner'
We can use GDI+ to draw chart components in C# or VB.NET language in memory and once the components are drawn in memory, we can save the drawing in an image on the Web server. Once the image is saved, we can display this image in an ASP.NET page using any Image tag or image control. >>> More
Display Graph using Boost Graph Library

as seen on Stack Overflow - Search for 'Stack Overflow'
Can anyone please tell me that once I've created a graph using Boost Graph library, how can I display that graph? My biggest concern is that the edge weights are coming from an exernal data source over the network. And I need to be able to display the edgeweights live as they get updated. >>> More
Matlab multiple graph types inside one graph

as seen on Stack Overflow - Search for 'Stack Overflow'
Hi, I have a task to draw electrostatic field between two electrodes( at given sizes and shape ), what i have now is that i draw the electrodes with area plot (area(elect_x,elect_y)) the graph looks like this: ------------------.--- |.. .---. |.. |...| |… >>> More
[C++] Write connected components of a graph using Boost Graph

as seen on Stack Overflow - Search for 'Stack Overflow'
I have an file that is a long list of weighted edges, in the following form node1_id node2_id weight node1_id node3_id weight and so on. So one weighted edge per line. I want to load this file into boost graph and find the connected components in the graph. Each of these connected components… >>> More

Related posts about graphviz

Control layout using graphviz twopi

as seen on Stack Overflow - Search for 'Stack Overflow'
I am trying to draw a graph showing search prefixes using twopi. I have a simple input file and am getting this output: (full image) Here is the input file: digraph search { // ordering=out; // color=blue; // rank=same; // overlap=scale; rankdir=LR; root=root; ranksep=1.25; overlap=true; "root"; a… >>> More
Why does Graphviz fail on gvLayout?

as seen on Stack Overflow - Search for 'Stack Overflow'
Once again, here I am writing C without really knowing what I'm doing... I've slapped together a simple function that I can call from a C# program that takes a DOT string, an output format, and a file name and renders a graph using Graphviz. #include "types.h" #include "graph.h" #include "gvc.h" #define… >>> More
How to generate multiple levels with GraphViz (Image_Graphviz interface for PHP)

as seen on Stack Overflow - Search for 'Stack Overflow'
Hi, i'm trying to generate the following diagram using Image_GraphViz for PEAR. However It only shows a top-level node (with the text "0") and childnodes "1", "2", "3" and "4" directly under the top-node. Am I missing something? This is the code: $gv = new Image_GraphViz(true); $gv->addEdge(array('1'… >>> More
Graphviz or Dynagraph for Graph-manipulation Program?

as seen on Stack Overflow - Search for 'Stack Overflow'
I'm looking into writing a program that will show a graph to the user. The graph will change over time (the user should be able to right-click on a graph item and ask for more detail, which will pop out new bits of the graph), and the user might be able to drag parts of the graph around. I would ideally… >>> More
How can I use the Graphviz macro in XWiki 2.0 syntax?

as seen on Stack Overflow - Search for 'Stack Overflow'
The XWiki FAQ gives an example for XWiki 1.0 syntax: {graphviz:type=dot}digraph G {Hello->world}{graphviz} My XWiki is properly set up to display this. But I'm not able to translate this into XWiki 2.0 syntax. I tried this {{graphviz type=dot}} ... {{/graphviz}} and other variations, but… >>> More