problem in extracting the data from text file
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by parijat24
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Published on 2010-05-20T13:05:14Z
Indexed on
2010/05/20
13:10 UTC
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python
hello , i am new to python , and I want to extract the data from this format
FBpp0143497 5 151 5 157 PF00339.22 Arrestin_N Domain 1 135 149 83.4 1.1e-23 1 CL0135
FBpp0143497 183 323 183 324 PF02752.15 Arrestin_C Domain 1 137 138 58.5 6e-16 1 CL0135
FBpp0131987 60 280 51 280 PF00089.19 Trypsin Domain 14 219 219 127.7 3.7e-37 1 CL0124
to this format
FBpp0143497
5 151 Arrestin_N 1.1e-23
FBpp0143497
183 323 Arrestin_C 6e-16
I have written code in hope that it works but it does not work , please help!
file = open('/ddfs/user/data/k/ktrip_01/hmm.txt','r')
rec = file.read()
for line in rec :
field = line.split("\t")
print field
print field[:]
print '>',field[0]
print field[1], field[2], field[6], field[12]
the hmmtext file is
FBpp0143497 5 151 5 157 PF00339.22 Arrestin_N Domain 1 135 149 83.4 1.1e-23 1 CL0135
FBpp0143497 183 323 183 324 PF02752.15 Arrestin_C Domain 1 137 138 58.5 6e-16 1 CL0135
FBpp0131987 60 280 51 280 PF00089.19 Trypsin Domain 14 219 219 127.7 3.7e-37 1 CL0124
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