problem in extracting the data from text file

Posted by parijat24 on Stack Overflow See other posts from Stack Overflow or by parijat24
Published on 2010-05-20T13:05:14Z Indexed on 2010/05/20 13:10 UTC
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hello , i am new to python , and I want to extract the data from this format

FBpp0143497 5 151 5 157 PF00339.22 Arrestin_N Domain 1 135 149 83.4 1.1e-23 1 CL0135
FBpp0143497 183 323 183 324 PF02752.15 Arrestin_C Domain 1 137 138 58.5 6e-16 1 CL0135
FBpp0131987 60 280 51 280 PF00089.19 Trypsin Domain 14 219 219 127.7 3.7e-37 1 CL0124

to this format

    FBpp0143497

5 151 Arrestin_N 1.1e-23

    FBpp0143497

183 323 Arrestin_C 6e-16

I have written code in hope that it works but it does not work , please help!

file = open('/ddfs/user/data/k/ktrip_01/hmm.txt','r')
rec = file.read()
for line in rec :
         field = line.split("\t")
         print field
         print field[:]
         print '>',field[0]
         print   field[1], field[2],   field[6], field[12]

the hmmtext file is

FBpp0143497 5    151      5    157 PF00339.22  Arrestin_N        Domain     1   135   149     83.4   1.1e-23   1 CL0135   
FBpp0143497    183    323    183    324 PF02752.15  Arrestin_C        Domain     1   137   138     58.5     6e-16   1 CL0135   
FBpp0131987     60    280     51    280 PF00089.19  Trypsin           Domain    14   219   219    127.7   3.7e-37   1 CL0124

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