Here is my apache configuration file. I have two domain names running on same ip but i want them to point to different webapps. But in this case both point to the one intended for e-yantra.org.

If I copy paste akshar.co.in part before E-yantra.org both start pointing to akshar.co.in

I have two A DNS entries (one per domain name) pointing to the same IP.

NameVirtualHost *:80


<VirtualHost *:80>
    ServerName www.e-yantra.org
    ServerAdmin [email protected]
    DocumentRoot /var/www
    <Directory />
        Options FollowSymLinks
        AllowOverride All 
    </Directory>
    <Directory /var/www/>
        Options Indexes FollowSymLinks MultiViews
        AllowOverride All
        Order allow,deny
        allow from all
    </Directory>

    <Directory /var/www/ci/>
        Options Indexes FollowSymLinks MultiViews
                AllowOverride All
                Order allow,deny
                allow from all
    </Directory>
    <Directory /var/www/db2/>
        Options Indexes FollowSymLinks MultiViews
                AllowOverride All
                Order allow,deny
                allow from all
    </Directory>

    ScriptAlias /cgi-bin/ /usr/lib/cgi-bin/
    <Directory "/usr/lib/cgi-bin">
        AllowOverride None
        Options +ExecCGI -MultiViews +SymLinksIfOwnerMatch
        Order allow,deny
        Allow from all
    </Directory>

    ErrorLog /var/log/apache2/error.log

    # Possible values include: debug, info, notice, warn, error, crit,
    # alert, emerg.
    LogLevel warn

    CustomLog /var/log/apache2/access.log combined

    Alias /doc/ "/usr/share/doc/"
    <Directory "/usr/share/doc/">
        Options Indexes MultiViews FollowSymLinks
        AllowOverride None
        Order deny,allow
        Deny from all
        Allow from 127.0.0.0/255.0.0.0 ::1/128
    </Directory>

</VirtualHost>

<VirtualHost *:80>
    ServerName www.akshar.co.in
    ServerAdmin [email protected]
    DocumentRoot /var/akshar.co.in

    <Directory /var/akshar.co.in/>
        Options Indexes FollowSymLinks MultiViews
        AllowOverride All
        Order allow,deny
        allow from all
    </Directory>

</VirtualHost>