I installed Eclipse via the Ubuntu repos (I'm on Ubuntu 11.10). Then I added the Indigo repo (http://download.eclipse.org/releases/indigo/) as only Helios repos were listed as part of the default install. If I go to Help>Check for Updates then a number of updates are listed for install, however when I click Next I get the following error:

    Cannot complete the install because of a conflicting dependency.
  Software being installed: Eclipse Java Development Tools 3.7.1.r371_v20110810-0800-7z8gFcoFMLfTabvKsR5Qm9rBGEBK (org.eclipse.jdt.feature.group 3.7.1.r371_v20110810-0800-7z8gFcoFMLfTabvKsR5Qm9rBGEBK)
  Software currently installed: Shared profile 1.0.0.1317160468326 (SharedProfile_PlatformProfile 1.0.0.1317160468326)
  Only one of the following can be installed at once: 
    JSch UI 1.1.300.dist (org.eclipse.jsch.ui 1.1.300.dist)
    JSch UI 1.1.300.I20110511-0800 (org.eclipse.jsch.ui 1.1.300.I20110511-0800)
  Cannot satisfy dependency:
    From: Shared profile 1.0.0.1317160468326 (SharedProfile_PlatformProfile 1.0.0.1317160468326)
    To: org.eclipse.jsch.ui [1.1.300.dist]
  Cannot satisfy dependency:
    From: Eclipse Java Development Tools 3.7.1.r371_v20110810-0800-7z8gFcoFMLfTabvKsR5Qm9rBGEBK (org.eclipse.jdt.feature.group 3.7.1.r371_v20110810-0800-7z8gFcoFMLfTabvKsR5Qm9rBGEBK)
    To: org.eclipse.platform.feature.group 3.7.1
  Cannot satisfy dependency:
    From: Eclipse Platform 3.7.1.r37x_v20110729-9gF7UHOxFtniV7mI3T556iZN9AU8bEZ1lHMcVK (org.eclipse.platform.feature.group 3.7.1.r37x_v20110729-9gF7UHOxFtniV7mI3T556iZN9AU8bEZ1lHMcVK)
    To: org.eclipse.jsch.ui [1.1.300.I20110511-0800]

I have tried fully removing eclipse and all config files and re-installing but that doesn't help. I can't find any info from Googling around either.