I developed a Flash website for a client and added the following .htaccess file in the root directory and the non-www to www redirect works perfectly.

RewriteEngine On
RewriteCond %{HTTP_HOST} ^website.com [NC]
RewriteRule ^(.*)$ http://www.website.com/$1 [L,R=301]

I was also asked to add a Wordpress blog so I put it in a new directory folder (as opposed to a sub domain) with so the URL is www.website.com/blog

Does Google now see the main site and blog as two different websites? Do I need to link them together using another .htaccess file in the Wordpress Root so Google automatically crawls the whole domain? Any help appreciated....