Is there any command line tool that can write all three formats/containers? I've already searched but could not find anything that does the job.

So far I'm using vorbiscomment, metaflac and id3tool and I really would like to replace them by a single tool if possible.

If there is no tool than can write them all, is there at least any suggestion to replace id3tool with something that can write id3v2 (v2.4) tags at least?

I'm not looking for a tagger but for a tool that will allow me to write meta data by a script to the different audio files. My current status is that I have a script that uses the three tools (vorbiscomment, metaflac and id3tool) but then i realized that id3tool can not write id3v2 tags... I'm creating automatically these 3 audio formats from a wav master and need to be able to automate the meta data writing to these files.