First-time Linux user, using a Packard Bell Easy Note TS laptop. My problem arose after I dual boot installed Ubuntu 12.04 on Windows 7 via WUBI. I backed up all my data, and reinstalled Windows from factory settings on the recovery partition. When I first tried to install Ubuntu I mistakenly closed the lid at the start of the installation, stopping it. After that I rebooted, and my second installation attempt went without a hitch. Ubuntu works perfectly, the data on the partitions seem to be fine.

My problem is I can't log back in to Windows 7. After selecting it in GRUB, and then in the Windows 7/ WUBI choice on boot, it loads up perfectly til the user log in screen. After the password is inputted, it stalls on the "Welcome" busy screen. This happens in Safe mode as well. Startup repair can't find a problem and neither can CHKDSK. System restore and Last known good config have no effect either.

If anyone could help me out, I'd be real grateful.

edit in response to the question below, since I don't know how to comment:

Windows was installed first and its partitions are the first on the list. Should I move the windows partitions to after the Linux ones on the disk? Thanks for your help.