I'm trying to setup a couple of LUKS-encrypted partitions to be mounted after boot-time on a new Ubuntu server which was installed with LVM on top of software RAID. After running cryptsetup luksFormat, the LUKS header is clearly visible on the volume. After running any flavor of mkfs, the header is overwritten (which does not happen on other systems that were setup without LVM), and cryptsetup will no longer recognize the device as a LUKS device.

# cryptsetup -y --cipher aes-cbc-essiv:sha256 --key-size 256 luksFormat /dev/dm-1
WARNING!
========
This will overwrite data on /dev/dm-1 irrevocably.

Are you sure? (Type uppercase yes): YES
Enter LUKS passphrase: 
Verify passphrase:
# hexdump -C /dev/dm-1|head -n5
00000000  4c 55 4b 53 ba be 00 01  61 65 73 00 00 00 00 00  |LUKS....aes.....|
00000010  00 00 00 00 00 00 00 00  00 00 00 00 00 00 00 00  |................|
00000020  00 00 00 00 00 00 00 00  63 62 63 2d 65 73 73 69  |........cbc-essi|
00000030  76 3a 73 68 61 32 35 36  00 00 00 00 00 00 00 00  |v:sha256........|
00000040  00 00 00 00 00 00 00 00  73 68 61 31 00 00 00 00  |........sha1....|
# cryptsetup luksOpen /dev/dm-1 web2-var
# mkfs.ext4 /dev/mapper/web2-var
[..snip..]
Creating journal (32768 blocks): done
Writing superblocks and filesystem accounting information: done   
# hexdump -C /dev/dm-1|head -n5
# cryptsetup luksClose /dev/mapper/web2-var
00000000  00 00 00 00 00 00 00 00  00 00 00 00 00 00 00 00  |................|
*
00000400  00 40 5d 00 00 88 74 01  66 a0 12 00 17 f2 6d 01  |.@]...t.f.....m.|
00000410  f5 3f 5d 00 00 00 00 00  02 00 00 00 02 00 00 00  |.?].............|
00000420  00 80 00 00 00 80 00 00  00 20 00 00 00 00 00 00  |......... ......|
# cryptsetup luksOpen /dev/dm-1 web2-var
Device /dev/dm-1 is not a valid LUKS device.

I have also tried mkfs.ext2 with the same result. Based on setups I've done successfully on Debian and Ubuntu (but not LVM or Ubuntu 12.04), it's hard to see why this is failing.