Can I accesss an external file when testing an R package?
Posted
by
Abe
on Stack Overflow
See other posts from Stack Overflow
or by Abe
Published on 2012-09-05T23:00:07Z
Indexed on
2012/09/13
21:38 UTC
Read the original article
Hit count: 159
I am using the testthat package to test an R package that is within a larger repository. I would like to test the contents of a file outside of the R package.
Can I reference a file that is located outside of an R package while testing?
What I have tried
A reproducible example can be downloaded as MyRepo.tar.gz
My repository is called "myRepo", and it includes an R package, "myRpkg" and a folder full of miscellaneous scripts
~/MyRepo/
~/MyRepo/MyRpkg
~/MyRepo/Scripts
The tests in "MyRpkg" are in the /tests/
folder
~/myRepo/myRpkg/tests/test.myscript.R
And I want to be able to test a file in the Scripts folder:
~/MyRepo/Scripts/myscript.sh
I would like to read the script to test the contents of the first line doing something like this:
check.script <- readLines("../../../Scripts/myscript.sh")[1]
expect_true(grepl("echo", check.script))
This works fine if I start from the MyRepo directory:
cd ~/MyRepo
R CMD check MyRpkg
But if I move to another directory, it fails:
cd
R CMD check MyRepo/MyRpkg
© Stack Overflow or respective owner