Is there a way to put gnome shell components (panel, message tray) to be appear below the popup menu's of other applications such as Java and Gtk Apps. The problem is when there are gtk apps which has tray icons the popup menu tends to appear below the message tray, this was bit ok now in 3.6 because the message tray hides soon as the icon is clicked. But the top bar is still a problem for large menus. When running eclipse with lot of options in the context menu the top most items including the scroll button are under top bar. Is there any thing i can change in the main.js or panel.js to get things below the popup menus ?