I'm pretty used to crashing my tomcat server. But I don't think I made any changes at all and seem to have broken it completely. Was working one min then not the next.

I really hope someone can help here is the Catalina.out:

Dec 20, 2012 1:35:56 AM org.apache.catalina.startup.Embedded initDirs
SEVERE: Cannot find specified temporary folder at 
Dec 20, 2012 1:35:57 AM org.apache.catalina.core.AprLifecycleListener init
INFO: Loaded APR based Apache Tomcat Native library 1.1.23.
Dec 20, 2012 1:35:57 AM org.apache.catalina.core.AprLifecycleListener init
INFO: APR capabilities: IPv6 [true], sendfile [true], accept filters [false], random [true].
Dec 20, 2012 1:35:57 AM org.apache.coyote.http11.Http11AprProtocol init
INFO: Initializing Coyote HTTP/1.1 on http-8040
Dec 20, 2012 1:35:57 AM org.apache.coyote.ajp.AjpAprProtocol init
INFO: Initializing Coyote AJP/1.3 on ajp-8042
Dec 20, 2012 1:35:57 AM org.apache.catalina.startup.Catalina load
INFO: Initialization processed in 587 ms
Dec 20, 2012 1:35:57 AM org.apache.catalina.core.StandardService start
INFO: Starting service Catalina
Dec 20, 2012 1:35:57 AM org.apache.catalina.core.StandardEngine start
INFO: Starting Servlet Engine: Apache Tomcat/6.0.33
Dec 20, 2012 1:35:57 AM org.apache.catalina.startup.HostConfig deployDirectory
INFO: Deploying web application directory docs
Dec 20, 2012 1:35:57 AM org.apache.catalina.startup.HostConfig deployDirectory
INFO: Deploying web application directory ROOT
Dec 20, 2012 1:35:57 AM org.apache.catalina.startup.HostConfig deployDirectory
INFO: Deploying web application directory myApp
Dec 20, 2012 1:35:57 AM org.apache.catalina.loader.WebappClassLoader validateJarFile
INFO: validateJarFile(/lhome/me/tomcat6/webapps/myApp/WEB-INF/lib/javax.servlet.jar) - jar not loaded. See Servlet Spec 2.3, section 9.7.2. Offending class: javax/servlet/Servlet.class
Dec 20, 2012 1:35:58 AM org.apache.coyote.http11.Http11AprProtocol start
INFO: Starting Coyote HTTP/1.1 on http-8040
Dec 20, 2012 1:35:58 AM org.apache.coyote.ajp.AjpAprProtocol start
INFO: Starting Coyote AJP/1.3 on ajp-8042
Dec 20, 2012 1:35:58 AM org.apache.catalina.startup.Catalina start
INFO: Server startup in 880 ms
Error Reading TLE line 1: java.lang.Exception: TLE line 1 not valid first line
Error Creating SGP4 Satellite
Dec 20, 2012 1:36:26 AM org.apache.coyote.http11.Http11AprProtocol pause
INFO: Pausing Coyote HTTP/1.1 on http-8040
Dec 20, 2012 1:36:26 AM org.apache.coyote.ajp.AjpAprProtocol pause
INFO: Pausing Coyote AJP/1.3 on ajp-8042
Dec 20, 2012 1:36:27 AM org.apache.catalina.core.StandardService stop
INFO: Stopping service Catalina
Dec 20, 2012 1:36:30 AM org.apache.catalina.loader.WebappClassLoader clearReferencesJdbc
SEVERE: The web application [/myApp] registered the JDBC driver [com.mysql.jdbc.Driver] but failed to unregister it when the web application was stopped. To prevent a memory leak, the JDBC Driver has been forcibly unregistered.
Dec 20, 2012 1:36:30 AM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads
SEVERE: The web application [/myApp] is still processing a request that has yet to finish. This is very likely to create a memory leak. You can control the time allowed for requests to finish by using the unloadDelay attribute of the standard Context implementation.
Dec 20, 2012 1:36:30 AM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads
SEVERE: The web application [/myApp] appears to have started a thread named [Timer-0] but has failed to stop it. This is very likely to create a memory leak.
Dec 20, 2012 1:36:30 AM org.apache.coyote.http11.Http11AprProtocol destroy
INFO: Stopping Coyote HTTP/1.1 on http-8040
Dec 20, 2012 1:36:30 AM org.apache.coyote.ajp.AjpAprProtocol destroy
INFO: Stopping Coyote AJP/1.3 on ajp-8042
Dec 20, 2012 1:37:12 AM org.apache.catalina.startup.Catalina stopServer
SEVERE: Catalina.stop: 
java.net.ConnectException: Connection refused
    at java.net.PlainSocketImpl.socketConnect(Native Method)
    at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:339)
    at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:200)
    at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:182)
    at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:391)
    at java.net.Socket.connect(Socket.java:579)
    at java.net.Socket.connect(Socket.java:528)
    at java.net.Socket.<init>(Socket.java:425)
    at java.net.Socket.<init>(Socket.java:208)
    at org.apache.catalina.startup.Catalina.stopServer(Catalina.java:422)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:601)
    at org.apache.catalina.startup.Bootstrap.stopServer(Bootstrap.java:338)
    at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:416)

And I have a new log that has been created, I've never seen it before but it seems to think its something severe. A long one but here it is:

Massive Error Log I've never seen before