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• Fortran recursion segmentation faults

  - by ConnorG

  Hey all - I have to design and implement a Fortran routine to determine the size of clusters on a square lattice, and it seemed extremely convenient to code the subroutine recursively. However, whenever my lattice size grows beyond a certain value (around 200/side), the subroutine consistently segfaults. Here's my cluster-detection routine: RECURSIVE SUBROUTINE growCluster(lattice, adj, idx, area) INTEGER, INTENT(INOUT) :: lattice(:), area INTEGER, INTENT(IN) :: adj(:,:), idx lattice(idx) = -1 area = area + 1 IF (lattice(adj(1,idx)).GT.0) & CALL growCluster(lattice,adj,adj(1,idx),area) IF (lattice(adj(2,idx)).GT.0) & CALL growCluster(lattice,adj,adj(2,idx),area) IF (lattice(adj(3,idx)).GT.0) & CALL growCluster(lattice,adj,adj(3,idx),area) IF (lattice(adj(4,idx)).GT.0) & CALL growCluster(lattice,adj,adj(4,idx),area) END SUBROUTINE growCluster where adj(1,n) represents the north neighbor of site n, adj(2,n) represents the west and so on. What would cause the erratic segfault behavior? Is the cluster just "too huge" for large lattice sizes?

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• How to center an R plot

  - by ConnorG

  I'm working on visualizing a matrix in R (almost exactly like http://reference.wolfram.com/mathematica/ref/MatrixPlot.html), and I've been using image(<matrix>,axes=FALSE) to draw the picture. However, I noticed that with the y-axis turned off, the plot isn't centered--the space is still there for the axis ticks + label. I can finagle some centering with par(oma=c(0,0,0,2.5)) but this seems inefficient and error-prone (if my matrix were to change dimensions/become non-square). Is there a better way to force the graphic to center? The right hand margin is significantly smaller than the left.

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• Why does Git display certain new folders when checking out old revisions?

  - by ConnorG

  Hey all - I'm still learning the ropes of Git (love it!) but the other day I noticed some behavior I just do not understand. We have, in essence, three folders that got moved into the repository at different times (one immediately after we created the repo, one a little while later, and one just recently). Recently, I had to get some code out of an old revision. I used git checkout <old SHA1 hash> to pull up one of our first checkins, when I noticed Git showed the old folder (as it should), as well as the newest folder (which got added to the repo long after the checked out commit was made). But it did not show the second folder. What would cause Git to display the newest folder with the old revision?

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• How to center an R plot after removing axis labels

  - by ConnorG

  I'm working on visualizing a matrix in R (almost exactly like http://reference.wolfram.com/mathematica/ref/MatrixPlot.html), and I've been using image(<matrix>,axes=FALSE) to draw the picture. However, I noticed that with the y-axis turned off, the plot isn't centered--the space is still there for the axis ticks + label. I can finagle some centering with par(oma=c(0,0,0,2.5)) but this seems inefficient and error-prone (if my matrix were to change dimensions/become non-square). Is there a better way to force the graphic to center? The right hand margin is significantly smaller than the left.

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