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  • Problem with building tree bottom up

    - by Esmond
    Hi, I have problems building a binary tree from the bottom up. THe input of the tree would be internal nodes of the trees with the children of this node being the leaves of the eventual tree. So initially if the tree is empty the root would be the first internal node. Afterwards, The next internal node to be added would be the new root(NR),

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  • converting a Tree to newick format. java

    - by Esmond
    I'm having problems converting a binary rooted tree to newick format. The full explanation for such a format can be found: http://code.google.com/p/mrsrf/wiki/NewickTree An example of a newick format would be as follows: for a tree T such as http://www.cs.mcgill.ca/~cs251/OldCourses/1997/topic8/images/completetreetwo.gif the newick

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  • Vector ArrayIndexOutOfBounds

    - by Esmond
    I'm having an ArrayIndexOutofBounds exception with the following code. The exception is thrown at the line where Node nodeJ = vect.get(j) but it does not make sense to me since j is definitely smaller than i and Node nodeI = vect.get(i) does not throw any exception. any help is appreciated. public static Vector join(Vector

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  • Data structure for unrooted trees

    - by Esmond
    I'm having problems figuring out how to build an unrooted tree with weighted edges and what data structure to store such a tree. An example of an unrooted tree would be like the one here: http://www.bio.davidson.edu/courses/GENOMICS/seq/unrooted.gif The problem i am having is the leaves would only have 1 link to the internal

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  • String[] initialized by null???

    - by Esmond
    Hi i encountered this problem whereby when i initialized my String[], there seems to be a null in the String[] before i do anything. How do i initialized the String[] to be completely empty,i.e. without the null at the start? The output for the following code is: nullABC nullABC nullABC nullABC nullABC public static void

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