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• Communicate between separate MPI-Programs

  - by Fyg

  I have the following problem: Program 1 has a huge amount of data, say 10GB. The data in question consists of large integer- and double-arrays. Program 2 has 1..n MPI processes that use tiles of this data to compute results. How can I send the data from program 1 to the MPI Processes? Using File I/O is out of question. The compute node has sufficient RAM.

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• Preallocate memory for a program in Linux before it gets started

  - by Fyg

  Hi, folks, I have a program that repeatedly solves large systems of linear equations using cholesky decomposition. Characterising is that I sometimes need to store the complete factorisation which can exceed about 20 GB of memory. The factorisation happens inside a library that I call. Furthermore, this matrix and the resulting factorisation changes quite frequently and as such the memory requirements as well. I am not the only person to use this compute-node. Therefore, is there a way to start the program under Linux and preallocate free memory for the process? Something like: $: prealloc -m 25G ./program

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