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• Third-party open-source projects in .NET and Ruby and NIH syndrome

  - by Anton Gogolev

  The title might seem to be inflammatory, but it's here to catch your eye after all. I'm a professional .NET developer, but I try to follow other platforms as well. With Ruby being all hyped up (mostly due to Rails, I guess) I cannot help but compare the situation in open-source projects in Ruby and .NET. What I personally find interesting is that…

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• How can I tackle 'profoundly found elsewhere' syndrome (inverse of NIH)?

  - by Alistair Knock

  How can I encourage colleagues to embrace small-scale innovation within our team(s), in order to get things done quicker and to encourage skills development? (the term 'profoundly found elsewhere' comes from Wikipedia, although it is scarcely used anywhere else apart from a reference to Proctor & Gamble) I've worked in both environments where…

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• PeopleSoft Grants & the Federal Agency Letter of Credit Draw Changes

  - by Mark Rosenberg

  For decades, most, if not all, US Federal agencies that sponsor research allowed grant recipients to request and receive payments using pooled accounts, commonly known as pooled letter of credit (LOC) draws. This enabled organizations, such as universities and hospitals, fast and efficient access to reimbursement of the expenditures they incurred…

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• Python finding index in a array

  - by NIH

  I am trying to see if a company from a list of companies is in a line in a file. If it is I utilize the index of that company to increment a variable in another array. The following is my python code. I keep getting the following error: AttributeError: 'set' object has no attribute 'index'. I cannot figure out what is going wrong and think…

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• How can I use Qt to get html code of the redirected page??

  - by Claire Huang

  I'm trying to use Qt to download the html code from the following url: http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=nucleotide&cmd=search&term=AB100362 this url will re-direct to www.ncbi.nlm.nih.gov/nuccore/27884304 I try to do it by following way, but I cannot get anything. it works for some webpage such as www.google.com,…

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• How can I use Qt to get html code of this NCBI page??

  - by user308503

  I'm trying to use Qt to download the html code from the following url: http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=nucleotide&cmd=search&term=AB100362 this url will re-direct to www.ncbi.nlm.nih.gov/nuccore/27884304 I try to do it by following way, but I cannot get anything. it works for some webpage such as www.google.com,…

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• "fopen: No such file or directory" error

  - by Akshay Bhat

  I am getting following cryptic error: akshay@akshay-VirtualBox:/mnt/mmpp$ ./bin/metamap10 /mnt/mmpp/bin/SKRrun.10 -L 2010 /mnt/mmpp/bin/metamap10.BINARY.Linux -Z 10 --debug input.txt fopen: No such file or directory does this error implies that it cannot fopen cannot find a required file or fopen itself is nonexistent, note that both…

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• How can I extract paragaphs and selected lines with Perl?

  - by neversaint

  I have a text where I need to: to extract the whole paragraph under the section "Aceview summary" until the line that starts with "Please quote" (not to be included). to extract the line that starts with "The closest human gene". to store them into array with two elements. The text looks like this (also on pastebin): AceView:…

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• Please recommend PDU SMS format code or library for .NET or C++

  - by Pavel Radzivilovsky

  I have been searching a lot for a chunk of code, or a library to format SMS messages in PDU format and had little luck. They were either huge monsters with terrific dependencies on everything way above my requirements and a very obscure interface, totally not justifying the straight-forward, although rather complex encoding. Being…

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• How to access members of an rdf list with rdflib (or plain sparql)

  - by tjb

  What is the best way to access the members of an rdf list? I'm using rdflib (python) but an answer given in plain SPARQL is also ok (this type of answer can be used through rdfextras, a rdflib helper library). I'm trying to access the authors of a particular journal article in rdf produced by Zotero (some fields have been removed…

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• Saving html page from MATLAB web browser

  - by yuk

  Following this question I get a message on the retrieved page that "Your browser does not support JavaScript so some functionality may be missing!" If I open this page with web(url) in MATLAB web browser and accept certificate (once per session), the page opens properly. How can I save the page source from the browser with a…

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• How to enable 'wget' to download the whole content of HTML with Javascript

  - by neversaint

  I have a site which I want to download using Unix wget. If you look at the source code and content of the file it contain section called SUMMARY. However after issuing a wget command like this: wget -O downdloadedtext.txt …

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• Getting data into MATLAB from HTTPS

  - by yuk

  Anybody know if it's possible? I'm trying to get the data by using the following code url = 'https://cgwb.nci.nih.gov/cgi-bin/hgTracks'; params = {'org','Human','db','hg18','position','EGFR'}; urltxt =…

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• Career Change Need Advice: Professional Web Developer

  - by bikedorkseattle

  I'm hoping to get some advice here on the steps I should take to make a career change into professional web development. I've been working in cancer research the last 14 years and I need a change. The…

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• How can I do batch image processing with ImageJ in Java or clojure?

  - by Robert McIntyre

  I want to use ImageJ to do some processing of several thousand images. Is there a way to take any general imageJ plugin and apply it to hundreds of images automatically? For example, say I want to…

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• How to set QNetworkReply properties to get correct NCBI pages?

  - by Claire Huang

  I try to get this following url using the downloadURL function: http://www.ncbi.nlm.nih.gov/nuccore/27884304 But the data is not as what we can see through the browser. Now I know it's because that…

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• How can I do batch image processing with ImageJ in clojure?

  - by Robert McIntyre

  I want to use ImageJ to do some processing of several thousand images. Is there a way to take any general imageJ plugin and apply it to hundreds of images automatically? For example, say I want to…

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• How can I set QNetworkReply properties to get correct NCBI pages?

  - by Claire Huang

  I try to get this following url using the downloadURL function: http://www.ncbi.nlm.nih.gov/nuccore/27884304 But the data is not as what we can see through the browser. Now I know it's because that…

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• R: Why does read.table stop reading a file?

  - by Mike Dewar

  I have a file, called genes.txt, which I'd like to become a data.frame. It's got a lot of lines, each line has three, tab delimited fields: mike$ wc -l genes.txt 42476 genes.txt I'd like to…

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• ASP.NET CacheDependency out of ThreadPool

  - by Stephen

  In an async http handler, we add items to the ASP.NET cache, with dependencies on some files. If the async method executes on a thread from the ThreadPool, all is fine: AsyncResult result = new…

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• Why can't I run a Perl program from TextMate?

  - by JZ

  I'm following a bioinformatics text, and this represents one of my first Perl scripts. While in TextMate, this does not produce any result. Is it functioning? I added "hello world" at the bottom…

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• Can RPM packages be installed into Cygwin?

  - by Dejian Zhao

  I noticed that there is a command - rpm - under Cygwin 1.7. Does that mean RPM packages can be installed into Cygwin? I tried to install ncbi-blast-2.2.26+-3.i686.rpm (see:…

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• Daylight saving time and Timezone best practices

  - by Oded

  I am hoping to make this question and the answers to it the definitive guide to dealing with daylight saving time, in particular for dealing with the actual change overs. …

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• replaceAll() method using parameter from text file

  - by Herman Plani Ginting

  i have a collection of raw text in a table in database, i need to replace some words in this collection using a set of words. i put all the term to be replace and its…

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