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• Why is this rkhunter script sending empty emails?

  - by Oddthinking

  I have started running rkhunter (a security monitoring tool) and I have finally managed to clear all of its warnings. Now, a cron job runs every day to monitor my machine. Rather than send me an email of warnings, it sends me an email with no body - which I don't really want. Looking at the (unedited, straight out of the box) /etc/cron.daily/rkhunter script, it contains this snippet of shell code: if [ -s "$OUTFILE" ]; then ( echo "Subject: [rkhunter] $(hostname -f) - Daily report" echo "To: $REPORT_EMAIL" echo "" cat $OUTFILE ) | /usr/sbin/sendmail $REPORT_EMAIL fi The -s clause should prevent empty emails from being sent, right? Does anyone have an explanation why this would still send empty emails?

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• What's wrong with relative imports in Python?

  - by Oddthinking

  I recently upgraded versions of pylint, a popular Python style-checker. It has gone ballistic throughout my code, pointing out places where I import modules in the same package, without specifying the full package path. The new error message is W0403. W0403: Relative import %r, should be %r Used when an import relative to the package directory is detected. Example For example, if my packages are structured like this: /cake /__init__.py /icing.py /sponge.py /drink and in the sponge package I write: import icing instead of import cake.icing I will get this error. While I understand that not all Pylint messages are of equal importance, and I am not afraid to dismiss them, I don't understand why such a practice is considered a poor idea. I was hoping someone could explain the pitfalls, so I could improve my coding style rather than (as I currently plan to do) turning off this apparently spurious warning.

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• The Mystery of the Vanishing Disk Space

  - by Oddthinking

  My disk space is dwindling by about 2GB a day! I only have a few more days before I run out of space. $ df -h Filesystem Size Used Avail Use% Mounted on /dev/sda4 143G 126G 11G 93% / udev 491M 4.0K 491M 1% /dev tmpfs 200M 696K 199M 1% /run none 5.0M 0 5.0M 0% /run/lock none 499M 144K 499M 1% /run/shm /dev/sda2 1.9G 580M 1.2G 33% /tmp /dev/sda1 92M 29M 58M 33% /boot I have been searching for the biggest directories/log files, deleting and compressing. But I am still losing the war. Finally, I realised I have a big misunderstanding: julian@server1:~$ sudo du -h / | tail -n 1 16G / All of my files in / only add up to 16 GB. That leaves 110 GB unaccounted for! Clearly I have a misunderstanding: I thought the '/dev/sda4' line represented all the files visible from '/'. What should I be reading to understand where the other storage has gone? More details: I have an Ubuntu 11.10 server, that was set-up by data-center staff. It is running my own code (which is fairly prolific with log files, but otherwise doesn't store much stuff on the drive) duplicity for backups (which tends to store a lot of signature files) various other standard services, like Apache, nagios, etc. They are very lightly used. It has been up for about 4 months without a reboot. I lied about the du output (simplified it for effect). It also complained about not being able to access GVFS and the du processes's own resources. I believe they are irrelevant: . du: cannot access `/home/julian/.gvfs': Permission denied du: cannot access `/proc/10841/task/10841/fd/4': No such file or directory du: cannot access `/proc/10841/task/10841/fdinfo/4': No such file or directory du: cannot access `/proc/10841/fd/4': No such file or directory du: cannot access `/proc/10841/fdinfo/4': No such file or directory

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• Turning off XON/XOFF when SSHing via PuTTY

  - by Oddthinking

  I have a fresh install of Ubuntu 9.10 on a rented dedicated server. When I ssh to it using PuTTY (on a Windows machine), I find it responds to Ctrl+S and Ctrl+Q as XON/XOFF transmission control (i.e. the terminal freezes everytime I type Ctrl+S until I type Ctrl + Q). This hasn't been a problem on other remote servers, and I realise I don't really have much idea about how this is determined. Is this something that is negotiated at the start of the terminal session, something that is set by the choice of terminal emulation (TERM=xterm, if that helps) or - as I suspect - some setting on the server I am not aware of. How do I tell Ubuntu that it is 2011, and no-one has terminals that rely on XON/XOFF any more?

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• Forensic Analysis of the OOM-Killer

  - by Oddthinking

  Ubuntu's Out-Of-Memory Killer wreaked havoc on my server, quietly assassinating my applications, sendmail, apache and others. I've managed to learn what the OOM Killer is, and about its "badness" rules. While my machine is small, my applications are even smaller, and typically only half of my physical memory is in use, let alone swap-space, so I was surprised. I am trying to work out the culprit, but I don't know how to read the OOM-Killer logs. Can anyone please point me to a tutorial on how to read the data in the logs (what are ve, free and gen?), or help me parse these logs? Apr 20 20:03:27 EL135 kernel: kill_signal(13516.0): selecting to kill, queued 0, seq 1, exc 2326 0 goal 2326 0... Apr 20 20:03:27 EL135 kernel: kill_signal(13516.0): task ebb0c6f0, thg d33a1b00, sig 1 Apr 20 20:03:27 EL135 kernel: kill_signal(13516.0): selected 1, signalled 1, queued 1, seq 1, exc 2326 0 red 61795 745 Apr 20 20:03:27 EL135 kernel: kill_signal(13516.0): selecting to kill, queued 0, seq 2, exc 122 0 goal 383 0... Apr 20 20:03:27 EL135 kernel: kill_signal(13516.0): task ebb0c6f0, thg d33a1b00, sig 1 Apr 20 20:03:27 EL135 kernel: kill_signal(13516.0): selected 1, signalled 1, queued 1, seq 2, exc 383 0 red 61795 745 Apr 20 20:03:27 EL135 kernel: kill_signal(13516.0): task ebb0c6f0, thg d33a1b00, sig 2 Apr 20 20:03:27 EL135 kernel: OOM killed process watchdog (pid=14490, ve=13516) exited, free=43104 gen=24501. Apr 20 20:03:27 EL135 kernel: OOM killed process tail (pid=4457, ve=13516) exited, free=43104 gen=24502. Apr 20 20:03:27 EL135 kernel: OOM killed process ntpd (pid=10816, ve=13516) exited, free=43104 gen=24503. Apr 20 20:03:27 EL135 kernel: OOM killed process tail (pid=27401, ve=13516) exited, free=43104 gen=24504. Apr 20 20:03:27 EL135 kernel: OOM killed process tail (pid=29009, ve=13516) exited, free=43104 gen=24505. Apr 20 20:03:27 EL135 kernel: OOM killed process apache2 (pid=10557, ve=13516) exited, free=49552 gen=24506. Apr 20 20:03:27 EL135 kernel: OOM killed process apache2 (pid=24983, ve=13516) exited, free=53117 gen=24507. Apr 20 20:03:27 EL135 kernel: OOM killed process apache2 (pid=29129, ve=13516) exited, free=68493 gen=24508. Apr 20 20:03:27 EL135 kernel: OOM killed process sendmail-mta (pid=941, ve=13516) exited, free=68803 gen=24509. Apr 20 20:03:27 EL135 kernel: OOM killed process tail (pid=12418, ve=13516) exited, free=69330 gen=24510. Apr 20 20:03:27 EL135 kernel: OOM killed process python (pid=22953, ve=13516) exited, free=72275 gen=24511. Apr 20 20:03:27 EL135 kernel: OOM killed process apache2 (pid=6624, ve=13516) exited, free=76398 gen=24512. Apr 20 20:03:27 EL135 kernel: OOM killed process python (pid=23317, ve=13516) exited, free=94285 gen=24513. Apr 20 20:03:27 EL135 kernel: OOM killed process tail (pid=29030, ve=13516) exited, free=95339 gen=24514. Apr 20 20:03:28 EL135 kernel: OOM killed process apache2 (pid=20583, ve=13516) exited, free=101663 gen=24515. Apr 20 20:03:28 EL135 kernel: OOM killed process logger (pid=12894, ve=13516) exited, free=101694 gen=24516. Apr 20 20:03:28 EL135 kernel: OOM killed process bash (pid=21119, ve=13516) exited, free=101849 gen=24517. Apr 20 20:03:28 EL135 kernel: OOM killed process atd (pid=991, ve=13516) exited, free=101880 gen=24518. Apr 20 20:03:28 EL135 kernel: OOM killed process apache2 (pid=14649, ve=13516) exited, free=102748 gen=24519. Apr 20 20:03:28 EL135 kernel: OOM killed process grep (pid=21375, ve=13516) exited, free=132167 gen=24520. Apr 20 20:03:57 EL135 kernel: kill_signal(13516.0): selecting to kill, queued 0, seq 4, exc 4215 0 goal 4826 0... Apr 20 20:03:57 EL135 kernel: kill_signal(13516.0): task ede29370, thg df98b880, sig 1 Apr 20 20:03:57 EL135 kernel: kill_signal(13516.0): selected 1, signalled 1, queued 1, seq 4, exc 4826 0 red 189481 331 Apr 20 20:03:57 EL135 kernel: kill_signal(13516.0): task ede29370, thg df98b880, sig 2 Apr 20 20:04:53 EL135 kernel: kill_signal(13516.0): selecting to kill, queued 0, seq 5, exc 3564 0 goal 3564 0... Apr 20 20:04:53 EL135 kernel: kill_signal(13516.0): task c6c90110, thg cdb1a100, sig 1 Apr 20 20:04:53 EL135 kernel: kill_signal(13516.0): selected 1, signalled 1, queued 1, seq 5, exc 3564 0 red 189481 331 Apr 20 20:04:53 EL135 kernel: kill_signal(13516.0): task c6c90110, thg cdb1a100, sig 2 Apr 20 20:07:14 EL135 kernel: kill_signal(13516.0): selecting to kill, queued 0, seq 6, exc 8071 0 goal 8071 0... Apr 20 20:07:14 EL135 kernel: kill_signal(13516.0): task d7294050, thg c03f42c0, sig 1 Apr 20 20:07:14 EL135 kernel: kill_signal(13516.0): selected 1, signalled 1, queued 1, seq 6, exc 8071 0 red 189481 331 Apr 20 20:07:14 EL135 kernel: kill_signal(13516.0): task d7294050, thg c03f42c0, sig 2 Watchdog is a watchdog task, that was idle; nothing in the logs to suggest it had done anything for days. Its job is to restart one of the applications if it dies, so a bit ironic that it is the first to get killed. Tail was monitoring a few logs files. Unlikely to be consuming memory madly. The apache web-server only serves pages to a little old lady who only uses it to get to church on Sundays a couple of developers who were in bed asleep, and hadn't visited a page on the site for a few weeks. The only traffic it might have had is from the port-scanners; all the content is password-protected and not linked from anywhere, so no spiders are interested. Python is running two separate custom applications. Nothing in the logs to suggest they weren't humming along as normal. One of them was a relatively recent implementation, which makes suspect #1. It doesn't have any data-structures of any significance, and normally uses only about 8% of the total physical RAW. It hasn't misbehaved since. The grep is suspect #2, and the one I want to be guilty, because it was a once-off command. The command (which piped the output of a grep -r to another grep) had been started at least 30 minutes earlier, and the fact it was still running is suspicious. However, I wouldn't have thought grep would ever use a significant amount of memory. It took a while for the OOM killer to get to it, which suggests it wasn't going mad, but the OOM killer stopped once it was killed, suggesting it may have been a memory-hog that finally satisfied the OOM killer's blood-lust.

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• SSH client and Command Prompt replacements Windows look-and-feel

  - by Oddthinking

  The Problem I've worked exclusively in Windows. I can handle that. I've worked exclusively in DOS (a long time ago!). I can handle that. I've worked exclusively in Unix. I can handle that. Right now, I am developing a command-line (python) application on a Windows machine, testing it in a DOS box (i.e. Windows' Command prompt), and then deploying it to Linux, and running it with PuTTY. I cannot handle that. My productivity drops dramatically when CTRL-C cuts in one window (Windows) and kills the process in another (DOS, Linux). My productivity drops dramatically when Enter copies the selection in one window (DOS), and deletes the selection in another (Windows), and runs the current half-edited command in the third (PuTTY). My productivity drops dramatically when I cannot hit Undo, Home or End. The Solution I am Seeking An SSH/Bash command-line client that runs on Windows and, to the extent possible, uses all the standard Windows shortcuts (Cut, Copy, Paste, Undo, Home, End, Insert, Shift-Arrows, etc.) work on a bash command line. Bonus points if it puts the cursor between letters, rather than on them. Plus, an equivalent DOS command-line drop-in that runs on Windows, and provides the same interface. I appreciate there may need to be special buttons to actually transfer CTRL codes (like CTRL-C) through in the cases I need them. I suspect the SSH client will need to be specific to a shell (so it knows when it is at the command prompt, and when it is inside a running app.) I know there are many SSH clients, but I am looking for advice for a particular need. PuTTY feels like an escape route for Unix programmers stuck on Windows. I am the opposite. Can anyone recommend one (or maybe a combination of an SSH client and an Command-Line replacement)?

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• Will Hotmail DELIVER to spam-friendly ISP?

  - by Oddthinking

  I have a user who is using Hotmail to communicate with one of our suppliers. Recently, Hotmail started bouncing emails to that address (while other ISPs are working fine.) Hotmail bounce messages contain very little details. Investigating, I found that the supplier's ISP has appeared on a blacklist of ISPs who do not do enough to prevent spamming from their users. (Note: Neither my user nor the supplier are mass-mailing.) In the circumstances, I can understand Hotmail declining to accept emails from the host, or accepting them but being quick to mark them as spam. However, I am surprised that they might refuse delivery. Does this sound plausible to you, or am I barking up the wrong tree?

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• Taking two actions in monit

  - by Oddthinking

  My monit script works to detect an outage with a process and inform me when the rule is: IF DOES NOT EXIST THEN ALERT My monit script works to detect an outage and automatically fix it when the rule is: IF DOES NOT EXIST THEN START But, what I want it to do is inform me AND fix it. Two rules in a row seems to make it ignore all but the last: IF DOES NOT EXIST THEN ALERT IF DOES NOT EXIST THEN START # No alert given. I could use a custom script that does both, and IF DOES NOT EXIST THEN EXEC "my_handwritten_script" but I was trying to move away from a mess of hand-written scripts towards a clean Monit configuration. Can I configure Monit to take two actions?

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• Base class deleted before subclass during python __del__ processing

  - by Oddthinking

  Context I am aware that if I ask a question about Python destructors, the standard argument will be to use contexts instead. Let me start by explaining why I am not doing that. I am writing a subclass to logging.Handler. When an instance is closed, it posts a sentinel value to a Queue.Queue. If it doesn't, a second thread will be left running forever, waiting for Queue.Queue.get() to complete. I am writing this with other developers in mind, so I don't want a failure to call close() on a handler object to cause the program to hang. Therefore, I am adding a check in __del__() to ensure the object was closed properly. I understand circular references may cause it to fail in some circumstances. There's not a lot I can do about that. Problem Here is some simple example code: explicit_delete = True class Base: def __del__(self): print "Base class cleaning up." class Sub(Base): def __del__(self): print "Sub-class cleaning up." Base.__del__(self) x = Sub() if explicit_delete: del x print "End of thread" When I run this I get, as expected: Sub-class cleaning up. Base class cleaning up. End of thread If I set explicit_delete to False in the first line, I get: End of thread Sub-class cleaning up. Exception AttributeError: "'NoneType' object has no attribute '__del__'" in <bound method Sub.__del__ of <__main__.Sub instance at 0x00F0B698>> ignored It seems the definition of Base is removed before the x._del_() is called. The Python Documentation on _del_() warns that the subclass needs to call the base-class to get a clean deletion, but here that appears to be impossible. Can you see where I made a bad step?

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• Could Python's logging SMTP Handler be freezing my thread for 2 minutes?

  - by Oddthinking

  A rather confusing sequence of events happened, according to my log-file, and I am about to put a lot of the blame on the Python logger, which is a bold claim. I thought I should get some second opinions about whether what I am saying could be true. I am trying to explain why there is are several large gaps in my log file (around two minutes at a time) during stressful periods for my application when it is missing deadlines. I am using Python's logging module on a remote server, and have set-up, with a configuration file, for all logs of severity of ERROR or higher to be emailed to me. Typically, only one error will be sent at a time, but during periods of sustained problems, I might get a dozen in a minute - annoying, but nothing that should stress SMTP. I believe that, after a short spurt of such messages, the Python logging system (or perhaps the SMTP system it is sitting on) is encountering errors or congestion. The call to Python's log is then BLOCKING for two minutes, causing my thread to miss its deadlines. (I was smart enough to move the logging until after the critical path of the application - so I don't care if logging takes me a few seconds, but two minutes is far too long.) This seems like a rather awkward architecture (for both a logging system that can freeze up, and for an SMTP system (Ubuntu, sendmail) that cannot handle dozens of emails in a minute**), so this surprises me, but it exactly fits the symptoms. Has anyone had any experience with this? Can anyone describe how to stop it from blocking? ** EDIT: I actually counted. A little under 4000 short emails in two hours. So far more than I suggested, sorry. But enough to over-fill a Sendmail's buffers?

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• Automatically deleting pyc files when corresponding py is moved (Mercurial)

  - by Oddthinking

  (I foresaw this problem might happen 3 months ago, and was told to be diligent to avoid it. Yesterday, I was bitten by it, hard, and now that it has cost me real money, I am keen to fix it.) If I move one of my Python source files into another directory, I need to remember to tell Mercurial that it moved (hg move). When I deploy the new software to my server with Mercurial, it carefully deletes the old Python file and creates it in the new directory. However, Mercurial is unaware of the pyc file in the same directory, and leaves it behind. The old pyc is used preferentially over new python file by other modules in the same directory. What ensues is NOT hilarity. How can I persuade Mercurial to automatically delete my old pyc file when I move the python file? Is there another better practice? Trying to remember to delete the pyc file from all the Mercurial repositories isn't working.

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• Programmatically generate video or animated GIF in Python?

  - by FogleBird

  I have a series of images that I want to create a video from. Ideally I could specify a frame duration for each frame but a fixed frame rate would be fine too. I'm doing this in wxPython, so I can render to a wxDC or I can save the images to files, like PNG. Is there a Python library that will allow me to create either a video (AVI, MPG, etc) or an animated GIF from these frames? Edit: I've already tried PIL and it doesn't seem to work. Can someone correct me with this conclusion or suggest another toolkit? This link seems to backup my conclusion regarding PIL: http://www.somethinkodd.com/oddthinking/2005/12/06/python-imaging-library-pil-and-animated-gifs/

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• How do I create a list or set object in a class in Python?

  - by Az

  For my project, the role of the Lecturer (defined as a class) is to offer projects to students. Project itself is also a class. I have some global dictionaries, keyed by the unique numeric id's for lecturers and projects that map to objects. Thus for the "lecturers" dictionary (currently): lecturer[id] = Lecturer(lec_name, lec_id, max_students) I'm currently reading in a white-space delimited text file that has been generated from a database. I have no direct access to the database so I haven't much say on how the file is formatted. Here's a fictionalised snippet that shows how the text file is structured. Please pardon the cheesiness. 0001 001 "Miyamoto, S." "Even Newer Super Mario Bros" 0002 001 "Miyamoto, S." "Legend of Zelda: Skies of Hyrule" 0003 002 "Molyneux, P." "Project Milo" 0004 002 "Molyneux, P." "Fable III" 0005 003 "Blow, J." "Ponytail" The structure of each line is basically proj_id, lec_id, lec_name, proj_name. Now, I'm currently reading the relevant data into the relevant objects. Thus, proj_id is stored in class Project whereas lec_name is a class Lecturer object, et al. The Lecturer and Project classes are not currently related. However, as I read in each line from the text file, for that line, I wish to read in the project offered by the lecturer into the Lecturer class; I'm already reading the proj_id into the Project class. I'd like to create an object in Lecturer called offered_proj which should be a set or list of the projects offered by that lecturer. Thus whenever, for a line, I read in a new project under the same lec_id, offered_proj will be updated with that project. If I wanted to get display a list of projects offered by a lecturer I'd ideally just want to use print lecturers[lec_id].offered_proj. My Python isn't great and I'd appreciate it if someone could show me a way to do that. I'm not sure if it's better as a set or a list, as well. Update After the advice from Alex Martelli and Oddthinking I went back and made some changes and tried to print the results. Here's the code snippet: for line in csv_file: proj_id = int(line[0]) lec_id = int(line[1]) lec_name = line[2] proj_name = line[3] projects[proj_id] = Project(proj_id, proj_name) lecturers[lec_id] = Lecturer(lec_id, lec_name) if lec_id in lecturers.keys(): lecturers[lec_id].offered_proj.add(proj_id) print lec_id, lecturers[lec_id].offered_proj The print lecturers[lec_id].offered_proj line prints the following output: 001 set([0001]) 001 set([0002]) 002 set([0003]) 002 set([0004]) 003 set([0005]) It basically feels like the set is being over-written or somesuch. So if I try to print for a specific lecturer print lec_id, lecturers[001].offered_proj all I get is the last the proj_id that has been read in.

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