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  • Calling software modules (Java, Perl, etc.) from R

    - by harshsinghal
    I've recently started using R for Natural Language Processing tasks and find that a lot of applications are available in Java and Perl (for my purposes). For example: A few perl modules are available to find distance measures between words by querying Wordnet. I am aware of the R Wordnet package, but it does not perform the tasks that these CPAN modules do. Many Java packages for NLP are out there, which I'd like to use from within R. I know of rJava, RSPerl, the simple system command amongst others, but I'd like more examples of how I could make calls to Java and Perl applications from R. Recently I tried capturing console output from a perl script. cat( 'print "Hello World\n";',file="hello.pl" ) system(command="c:\Perl64\bin\perl hello.pl") system(command=paste(Sys.getenv("COMSPEC"),"/c","C:\Perl64\bin\perl hello.pl")) None of the above system commands showed 'Hello World' on the R console. I've used "system" before to run perl scripts to perform tasks without wanting to capture console output. Any hints and redirection to other more extensive sources of information would be highly appreciated. Thank you

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  • NoClassDefFoundError when running java tool under Xcode

    - by pancake
    Hi all, I'm trying to create a Java Tool by using Xcode. I've already changed my build.xml to have Xcode target java 1.6 and not 1.3 so I can use generics. I'm getting no build errors and using 'javac' and 'java' in the terminal works. Now I want it to work in Xcode as well. I keep getting the following error: Exception in thread "main" java.lang.NoClassDefFoundError: MyClass where 'MyClass' is the class containing the main method. It probably has something to do with the classpath, which as the build.xml prescribes is "${bin}". There is a bin folder in my project folder, and it contains all the .class files needed to run the program. If anybody could help me, it'd be great!

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  • no ocijdbc10 in java.library.path

    - by B.Z.B
    Hey all, So I've been plagued by this issue, whenever I try to run my app in eclipse, I get this error. 2011-02-23 09:55:08,388 ERROR (com.xxxxx.services.factory.ServiceInvokerLocal:21) - java.lang.UnsatisfiedLinkError: no ocijdbc10 in java.library.path I've tried following the steps I found here with no luck. I've tried this on a XP VM as well as windows 7 (although in win 7 I get a different error, below) java.lang.UnsatisfiedLinkError: no ocijdbc9 in java.library.path I've made sure my oracle client was ok (by running TOAD) and I also re-added the classes12.jar / ojdbc14.jars to my WEB-INF/lib folder taken directly from my %ORACLE_HOME% folder (also re-added them to the lib path). I've also tried just adding the ojdbc14.jar without the classes12.jar. Any suggestions appreciated. In the XP VM I have my PATH variable set to C:\Program Files\Java\jdk1.6.0_24\bin;C:\ORACLE\product\10.2.0.1\BIN. I'm using Tomcat server 5.0

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  • Is there a way to make this perl code capture stderr as well as stdout from a tcsh?

    - by mikelong
    open UNIT_TESTER, qq(tcsh -c "gpath $dir/$tsttgt; bin/rununittests"|); while(<UNIT_TESTER>){ reportError($ignore{testabort},$tsttgt,"test problem detected for $tsttgt:$_ ") if /core dumped/; reportError($ignore{testabort},$tsttgt,"test problem detected for $tsttgt:$_ ") if /\[ FAILED \]/; writelog($tsttgt,$_); } close UNIT_TESTER; I have tried to redirect stderr to stdout using this syntax but it didn't work: open UNIT_TESTER, qq(tcsh -c "gpath $dir/$tsttgt; bin/rununittests >& "|); I have also read the discussion on the perl FAQ but that was in relation to bash: http://www.perl.com/doc/FAQs/FAQ/oldfaq-html/Q5.15.html

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  • How do I move the location of an xcodeproj file without breaking external build target?

    - by petFoo
    I have an Xcode project with a directory structure like this: MasterProjectDir/projectname.xcodeproj MasterProjectDir/ProjectSubDir/whatever.c MasterProjectDir/ProjectSubDir/etc.c MasterProjectDir/ProjectSubDir/Makefile My xcodeproj uses an external build target to point to the Makefile using these settings: Build Tool: /usr/bin/make Arguments: $(ACTION) Directory: ./ProjectSubDir For various reasons, I need to change the project directory structure to look like this: MasterProjectDir/projectname.xcodeproj MasterProjectDir/whatever.c MasterProjectDir/etc.c MasterProjectDir/Makefile I copied the .xcodeproj file into the ProjectSubDir and the project somehow still knows where to look for the files (?!?! - this is odd because their location is set as "relative to group" and I've just moved the xcodeproj file). It won't build. I get the following error: make: * No targets specified and no makefile found. Stop. Command /usr/bin/make failed with exit code 2 I could use a little help on this. There must be a setting I need to change somewhere.

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  • Locate Database File in SQLITE

    - by Nagendra Baliga
    I have created a file named "MyFile.db" using SQLite3 from my C#.net application. This file got created in my "D:\MyProject\bin" folder. I have created a table named "MyTable" inside "MyFile.db" from same C# app. Now I am running sqlite3.exe from my "C:\" drive to get Command Line Shell For SQLite. How can I get the file "D:\MyProject\bin\MyFile.db" in the SQLite Command Line Shell i.e, how can I locate the file "MyFile.db" in the command shell to get the data from "MyTable".

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  • Why doesn't my Perl script start under FastCGI?

    - by Sam
    I am getting this error in error_log one of my Perl CGI application. I am pretty sure I haven't changed my script at all and all of a sudden i have started getting this error. This is what I see in error_log: [Wed Jul 8 15:18:20 2009] [warn] FastCGI: server "/local/web/test/cgi-bin/test.pl" (pid 17033) terminated by calling exit with status '255' [Wed Jul 8 15:18:20 2009] [warn] FastCGI: server "/local/web/test/cgi-bin/test.pl" has failed to remain running for 30 seconds given 3 attempts, its restart interval has been backed off to 600 seconds (The snippet was edited for clarity) Also, the AddHandler line for FastCGI exists in the config file. Can any tell me the possible reasons for this error? There is nothing recorded in Apache logs.

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  • How are python pages coded and what can the language be compared to? [closed]

    - by avon_verma
    I have a few questions about python I've seen many pages like these on Google http://mail.google.com/support/bin/answer.py?answer=6583 https://www.google.com/adsense/support/bin/topic.py?topic=13488 ...that have .py extensions. 1: Are pages like these built on pure python code, but printing out html like print "<div etc..." or like the typical asp,jsp,php type of pages with html pages and embedded python code like: <html> <% some python code %> </html> 2: What is python mainly used for making? windows apps or web or .. ? 3: Are ruby and perl also similar to python?

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  • c, pass awk syntax as argument to execl

    - by Skuja
    I want to run following command in c to read systems cpu and memory usage: ps aux|awk 'NR > 0 { cpu +=$3; ram+=$4 }; END {print cpu,ram}' I am trying to pass it to execl command and after that read its output: execl("/bin/ps", "/bin/ps", "aux|awk", "'NR > 0 { cpu +=$3; ram+=$4 }; END {print cpu,ram}'",(char *) 0); but in terminal i am getting following error: ERROR: Unsupported option (BSD syntax) I would like to know how to properly pass awk as argument to execl?

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  • Making bash script to check connectivity and change connection if necessary. Help me improve it?

    - by cypherpunks
    My connection is flaky, however I have a backup one. I made some bash script to check for connectivity and change connection if the present one is dead. Please help me improve them. The scripts almost works, except for not waiting long enough to receive an IP (it cycles to next step in the until loop too quick). Here goes: #!/bin/bash # Invoke this script with paths to your connection specific scripts, for example # ./gotnet.sh ./connection.sh ./connection2.sh until [ -z "$1" ] # Try different connections until we are online... do if eval "ping -c 1 google.com" then echo "we are online!" && break else $1 # Runs (next) connection-script. echo fi shift done echo # Extra line feed. exit 0 And here is an example of the slave scripts: #!/bin/bash ifconfig wlan0 down ifconfig wlan0 up iwconfig wlan0 key 1234567890 iwconfig wlan0 essid example sleep 1 dhclient -1 -nw wlan0 sleep 3 exit 0

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  • How to determine files that are subjected to filter via gitattributes when filter is executed?

    - by rasjani
    I have bunch of ruby scripts in a git repository and it seems to be really hard to enforce people to write properly indented code. I also have a small ruby script that formats to code to specific standard and now i would like to run that as a a filter script so that junk wont get committed into repository. echo "*.rb filter=rubyfilter" > .gitattributes echo "[filter \"rubyfilter\"]" >> .git/config echo " clean = /home/rasjani/bin/rbeauty" >> .git/config echo " smudge = /home/rasjani/bin/rbeauty" >> .git/config does the dirty trick git side but the ruby script should then process the files affected: how / where do i look those up from ?

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  • How to run shell script with live feedback from PHP?

    - by Highway of Life
    How would I execute a shell script from PHP while giving constant/live feedback to the browser? I understand from the system function documentation: The system() call also tries to automatically flush the web server's output buffer after each line of output if PHP is running as a server module. I'm not clear on what they mean by running it as a 'server module'. I attempted to run the script in the cgi-bin, but either I'm doing it wrong, or that's not what they mean. Example PHP code: <?php system('/var/lib/script_test.sh'); Example shell code: #!/bin/bash echo "Start..." for i in {1..10} do echo "$i..." sleep 1 done echo "Done."

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  • References not shown in visual studio

    - by Dofs
    Hi, I have an ASP.NET 3.5 website project, where I have added a few assemblies. When I look in the bin folder in visual studio the references are not shown, but if I go to the references in the property pages for the website they are shown as GAC. Shouldn't dll's in GAC be shown under references for a website project in visual studio? The core problem is that I am getting an error that System.Core could not be loaded. The dll-file is shown under references under the project pages, but is not shown under bin in visual studio.

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  • How to copy a folder recursively with out overwriting the previous one

    what i need is i have linked my project with the cruise control, so when ever a build happens i want to copy the bin folder to a seperate destination folder with version number. That is when the project build happens for the second time i dont want to replace the bin folder of the first build i want to save this with another version number. How can i do that. Right now i got the thing how to copy the folder but it was overwriting the previous one. i dont want that to happen please help me how to implement the concept of versioning.

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  • Rails + RSpec problem

    - by FancyDancy
    I have just installed Rspec and Rspec-rails. When i try to run the test, it says: rake aborted! Command /opt/local/bin/ruby -I"lib" "/opt/local/lib/ruby/gems/1.8/gems/rspec-1.3.0/bin/spec" "spec/controllers/free_controller_spec.rb" --options "/Volumes/Trash/dev/app/trunk/spec/spec.opts" failed Full log here: http://pastie.org/939211 However, my second "test" application with sqlite works with it. I think the problem is in my DB. My ruby version is 1.8.7, i use mysql as database. My files: specs/spec_helper.rb config/environment.rb config/environments/test.rb List of my gems My test is just: require 'spec_helper' describe FreeController do it "should respond with success" do get 'index' response.should be_success end end I really can't understand the error, so i don't know how to fix it.. Additional question: should i use a fixtures and ActiveRecord, if i going to use Machinist for creating test data? What should i do to disable them?

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  • Windows batch file: is there a way to add an "and"?

    - by Beska
    The short version: is there a way to to write an "and" clause in a batch file? The slightly longer version: I've inherited a Visual Studio project that creates a dll and then copies that dll to another location. As a post build step, VS runs the following script. if not '$(ConfigurationName)' == 'DebugNoSvc' goto end xcopy /Y $(TargetDir)*.config $(ProjectDir)..\myService\bin\Debug xcopy /Y $(TargetDir)*.config $(ProjectDir)..\myService\bin\DebugNoSvc :end It looks like there's a problem when the project is compiled as Debug, since it doesn't do the copy (I'm guessing that at some point the middle section got updated, but the if clause didn't.) Is there an easy way to an "and" clause in batch?

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  • Does program need additional symbols from .so shared library except those declared in header file?

    - by solotim
    In C programming, I thought that a object file can be successfully linked with a .so file as long as the .so file offers all symbols which have been declared in the header file. Suppose I have foo.c, bar.h and two libraries libbar.so.1 and libbar.so.2. The implementation of libbar.so.1 and libbar.so.2 is totally different, but I think it's OK as long as they both offers functions declared in bar.h. I linked foo.o with libbar.so.1 and produced an executable: foo.bin. This executable worked when libbar.so.1 is in LD_LIBRARY_PATH.(of course a symbolic link is made as libbar.so) However, when I change the symbolic link to libbar.so.2, foo.bin could not run and complainted this: undefined symbol: _ZSt4cerr I found this symbol type is 'B' and it does not appear in libbar.so.2. Obviously this symbol has nothing to do with those functions I decared in bar.h. What's wrong here?

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  • some questions about python

    - by avon_verma
    I have a few questions about python I've seen many pages like these on Google http://mail.google.com/support/bin/answer.py?answer=6583 https://www.google.com/adsense/support/bin/topic.py?topic=13488 ...that have .py extensions. 1: Are pages like these built on pure python code, but printing out html like print "<div etc..." or like the typical asp,jsp,php type of pages with html pages and embedded python code like: <html> <% some python code %> </html> 2: What is python mainly used for making? windows apps or web or .. ? Also, are ruby and perl also similar to python?

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  • TFS 2008 and Common libraries folder structure.

    - by Doerr
    TFS 2008 and Common Libraries I have created a Team Project called "Common Library" that will host code used in numerous different Team Projects throughout TFS. For sake of argument, lets say we have 2 distinct Librarys under the "Common Library" Team Projects, MailProject and LoggingProject. Other projects throughout TFS will be using the binary representation of these projects via branching and not the actual source code. What is the best way to set up the folder structure for this Team Project? Do I add the project to the "Common Library" and simply "include" the bin/release folder as part of the project? I have seen some examples of people creating a seperate "Deploy" folder. I assume this is synonamous with the bin/release folder?

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  • Help with redirect and query strings

    - by James
    I'm a total novice at mod rewrite so I'll try and present my question as clearly as possible: I'm trying to create a url redirect of the following (static) affiliate url that can append it self to any product links after using a query string: affiliate url: hxxp://clk.affilite.com/fs-bin/click?id=aFb*BBBBBpQ&subid=&offerid=9999.2&type=5&tmpid=9999&RD_PARM1= product url: hxxp:// example.domain.com What I want to achieve is redirecting the affiliate code as below and being able to add dynamic product urls after as the following examples show: rewritten affiliate url: hxxp://domain.com/go affiliate url + product url: hxxp://domain.com/go?=http://example.domain.com redirects to: hxxp://clk.affilite.com/fs-bin/click?id=aFb*BBBBBpQ&subid=&offerid=9999.2&type=5&tmpid=9999&RD_PARM1=http://example.domain.com

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  • PHP & bash; Linux; Compile my own function

    - by flienteen
    Hi. I would like to make my own program but I have no idea how.. for example I want to make a typical 'Hello $user' program. So.. +-- hi ¦   +-- hi.sh ¦   +-- hi_to.sh hi.sh #!/bin/bash ~/hi/hi_to.sh $1 hi_to.sh #!/usr/bin/php <?php echo "\nHellO ".$argv[1]."\n"; ?> Run it in terminal: me:~/hi ? ./hi.sh User HellO User and my question is: how to compile all this files into one bash program?

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  • Fatal error: Call to undefined function mysqli_connect()

    - by Jack
    I have installed WAMP. I am using Tomcat 6 to run my PHP scripts. I am also using JavaBridge.war and I have copied my php scripts into \webapp\JavaBridge\project. I have removed the semicolon from php.ini file before the statements extension=php_mysqli.dll extension=php_mysql.dll I have added C:\wamp\bin into my PATH env variable. I have copied all dll's from C:\wamp\bin\php\php5.3.0\ext into C:\windows\system32 I am still getting this error. Fatal error: Call to undefined function mysqli_connect() in C:\Program Files\apache-tomcat-6.0.26\webapps\JavaBridge\project\pf_query.php on line 534 Note - I dont get this error when I run my PHP script from Apache 2.2.11 of the WAMP package.

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  • Moving directory after compilation of R

    - by CravingSpirit
    I compiled R in /tmp/R-3.0.0 and then moved it to /home/user/opt/R-3.0.0, then I got an error when executing R: /home/kaiyin/opt/R-3.0.0/bin/R: line 236: /tmp/R-3.0.0/etc/ldpaths: No such file or directory ERROR: R_HOME ('/tmp/R-3.0.0') not found If I export R_HOME='/home/kaiyin/opt/R-3.0.0', it still gives almost the same error: WARNING: ignoring environment value of R_HOME /home/kaiyin/opt/R-3.0.0/bin/R: line 236: /tmp/R-3.0.0/etc/ldpaths: No such file or directory ERROR: R_HOME ('/tmp/R-3.0.0') not found Is there a way to solve this, or do I have to recompile it?

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  • c++ fread changing fgetpos strangely

    - by Steve
    If I run: FILE* pFile = fopen("c:\\08.bin", "r"); fpos_t pos; char buf[5000]; int ret = fread(&buf, 1, 9, pFile); fgetpos(pFile, &pos); I get ret = 9 and pos = 9. However if I run FILE* pFile = fopen("c:\\08.bin", "r"); fpos_t pos; char buf[5000]; int ret = fread(&buf, 1, 10, pFile); fgetpos(pFile, &pos); ret = 10 as expected, but pos = 11! How can this be?

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