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• Can I have a shell alias evaluate a history substitution command?

  - by Brandon

  I'm trying to write an alias for cd !!:1, which takes the 2nd word of the previous command, and changes to the directory of that name. For instance, if I type rails new_project cd !!:1 the second line will cd into the "new_project" directory. Since !!:1 is awkward to type (even though it's short, it requires three SHIFTed keys, on opposite sides of of the keyboard, and then an unSHIFTed version of the key that was typed twice SHIFTed), I want to just type something like cd- but since the !!:1 is evaluated on the command line, I (OBVIOUSLY) can't just do alias cd-=!!:1 or I'd be saving an alias that contained "new_project" hard-coded into it. So I tried alias cd-='!!:1' The problem with this is that the !!:1 is NEVER evaluated, and I get a message that no directory named !!:1 exists. How can I make an alias where the history substitution is evaluated AT THE TIME I ISSUE THE ALIAS COMMAND, not when I define the alias, and not never? (I've tried this in both bash and zsh, and get the same results in both.)

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• Converting FASTQ to FASTA with SED/AWK

  - by neversaint

  I have a data in that always comes in block of four in the following format (called FASTQ): @SRR018006.2016 GA2:6:1:20:650 length=36 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGN +SRR018006.2016 GA2:6:1:20:650 length=36 !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!+! @SRR018006.19405469 GA2:6:100:1793:611 length=36 ACCCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC +SRR018006.19405469 GA2:6:100:1793:611 length=36 7);;).;);;/;*.2>/@@7;@77<..;)58)5/>/ Is there a simple sed/awk/bash way to convert them into this format (called FASTA): >SRR018006.2016 GA2:6:1:20:650 length=36 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGN >SRR018006.19405469 GA2:6:100:1793:611 length=36 ACCCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC In principle we want to extract the first two lines in each block-of-4 and replace @ with >.

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• ./configure : /bin/sh^M : bad interpreter

  - by Vineeth

  Hello there, I've been trying to install lpng142 on my fed 12 system. Seems like a problem to me. I get this error [root@localhost lpng142]# ./configure bash: ./configure: /bin/sh^M: bad interpreter: No such file or directory [root@localhost lpng142]# How do I fix this? and for more details, I shall include the /etc/fstub file details here # # /etc/fstab # Created by anaconda on Wed May 26 18:12:05 2010 # # Accessible filesystems, by reference, are maintained under '/dev/disk' # See man pages fstab(5), findfs(8), mount(8) and/or blkid(8) for more info # /dev/mapper/VolGroup-lv_root / ext4 defaults 1 1 UUID=ce67cf79-22c3-45d4-8374-bd0075617cc8 /boot ext4 defaults 1 2 /dev/mapper/VolGroup-lv_swap swap swap defaults 0 0 tmpfs /dev/shm tmpfs defaults 0 0 devpts /dev/pts devpts gid=5,mode=620 0 0 sysfs /sys sysfs defaults 0 0 proc /proc proc defaults 0 0 [root@localhost etc]# Help, please

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• linux user login/logout log for computer restriction

  - by Cedric

  Hi ! I would like to know how to log the login and logout of a user. I know it's possible to use the command "last". But this command is based on a file that has a r/w permission for the user, hence the possibility to change these data. I would like to log these data over two months. Why would I like to do that ? In fact, I would like to prevent a normal user to use a computer more than an hour a day - except week-ends, and 10 hours in total a week. Cedric System used : kubuntu, Programming language : bash script

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• IF statement error in tcsh

  - by kaustav datta

  Having trouble executing an IF statement through tcsh. This works FINE for me - #!/bin/bash if echo `cal|tail -6|sed -e 's/^.\{3\}//' -e 's/.\{3\}$//' |tr -s '[:blank:]' '\n' | head -11|tail -10|tr -s '\n' ' '`|grep -w `date "+%e"` then echo "present" else echo "absent" fi This is the PROBLEM - #!/bin/tcsh if echo `cal|tail -6|sed -e 's/^.\{3\}//' -e 's/.\{3\}$//' |tr -s '[:blank:]' '\n' | head -11|tail -10|tr -s '\n' ' '`|grep -w `date "+%e"` then echo "present" else echo "absent" endif Getting this error- if: Expression Syntax. then: Command not found. I really need this to run using "tcsh"

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• nested if: too many arguments?

  - by FLX

  For some reason this code creates problems: source="/foo/bar/" destination="/home/oni/" if [ -d $source ]; then echo "Source directory exists" if [ -d $destination ]; then echo "Destination directory exists" rsync -raz --delete --ignore-existing --ignore-times --size-only --stats --progress $source $destination chmod -R 0755 $destination else echo "Destination directory does not exists" fi else echo "Source directory does not exists" fi It errors out with: Source directory exists /usr/bin/copyfoo: line 7: [: too many arguments Destination directory does not exists I used nested if statements in bash before without a problem, what simple mistake am I overlooking? Thanks!

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• Smart auto-completition for staged git file names, used with difftool

  - by piobyz

  I'd like to have a smart auto-completition of currently staged file names when using git diff. Example: modified: DIR1/LongCamelCaseFileName.h modified: DIR1/AnotherLongCamelCaseFileName.m modified: DIR1/AndThereAreALotOfThemInDir1.m modified: DIR2/file4.m and here, using bash tab-auto-complete functionality I'd like to use it with git diff where by smart I mean that after typing git diff I'd need to type only a short part of the staged file name that I want to diff, and without a dirname, so for example git diff And<TAB> would result in git diff AndThereAreALotOfThemInDir1.m Actually, without a dir-ommiting-part it would be still useful (auto-completing using only staged files pool).

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• How do i use RVM w/ Hudson CI server on Debian?

  - by JoshReedSchramm

  I'm trying to setup an automated "build" server for my rails projects using Hudson CI. SO far it's able to run specs and do metrics on the code but I have 2 different projects dependent on 2 different versions of ruby. So i'm trying to use RVM to run multiple copies of ruby then switch back and forth in a pre-build step. I found a couple posts like this one that try and explain how to make this work, but I'm not running a startup script for hudson, it starts on boot which is how it worked out of the box when i installed it via the debian instructions. The problem seems to be that even though hudson runs under the "hudson" account and that account has rvm installed (and working) when it tries to run a shell based prebuild step to call rvm switch 1.8.7 it fails with the error "rvm: command not found" Not sure what I'm doing wrong. Hudson is using SH as its shell but i also tried using bash. no luck. Has anyone gotten this working before in this setup?

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• Textmate bundle to remove a directory and build with Jekyll

  - by m1755

  I am looking for a simple Textmate bundle that will do the following two tasks in order: Delete the entire contents (including folders) of a directory (eg. ~/Sites/my_site). Run the jekyll command in the directory of the Textmate project. I am going to associate this with a "save current file" and use it to auto build my Jekyll site into the specified directory each time I save a file inside the project. Notes If #2 isn't possible, then cd into a specified directory and run the jekyll command. Would prefer bash or ruby.

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• Eclipse and Cassandra

  - by H2oNinja

  I've searched various websites for instructions on how to link 'Cassandra' and 'Eclipse' and followed directions to the last detail in several sites. For some reason, while using Git Bash, I cant get through the 'ant build', via instruction in said mentioned locations across the web. In some location's its easy, just make sure you have; 1. Apache Cassandra source 2. Apache Ant 3. Git So, yeah I've downloaded all the above, tried the same directory, different directories, etc., although still unable to get past the middle step of 'ant build'. Here are a few websites I've used to muddle through setting up the Src code for both utilities, 'Eclipse' and 'Cassandra'. http://uisurumadushanka89.blogspot.com/2012/02/apache-cassandra-how-to-setup-source.html and http://wiki.apache.org/cassandra/RunningCassandraInEclipse both resulting in an immediate halt at the 'ant build'. any insights are information is greatly appreciated. Thank-you, Ryan

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• ssh-keygen accepting stdin

  - by Ryan

  I am trying to call ssh-keygen using a variable through bash as an input instead of a file to get a fingerprint of a public key. This method does not work as it says the key file is invalid (it's correct for sure) echo $pubkey | ssh-keygen -lf /dev/stdin This does work ssh-keygen -lf /dev/stdin < alpha.pub This does not work because I get an ambiguous redirect ssh-keygen -lf /dev/stdin < $(echo $pubkey) I would appreciate some insight as to how to get ssh-keygen to read from a variable with a public key and if possible, an explanation as to why the redirects aren't doing what I think they should be doing. I searched online but many of the redirect tutorials didn't seem to answer my questions.

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• Best way to choose a random file from a directory in a shell script

  - by jhs

  What is the best way to choose a random file from a directory in a shell script? Here is my solution in Bash but I would be very interested for a more portable (non-GNU) version for use on Unix proper. dir='some/directory' file=`/bin/ls -1 "$dir" | sort --random-sort | head -1` path=`readlink --canonicalize "$dir/$file"` # Converts to full path echo "The randomly-selected file is: $path" Anybody have any other ideas? Edit: lhunath makes a good point about parsing ls. I guess it comes down to whether you want to be portable or not. If you have the GNU findutils and coreutils then you can do: find "$dir" -maxdepth 1 -mindepth 1 -type f -print0 \ | sort --zero-terminated --random-sort \ | sed 's/\d000.*//g/' Whew, that was fun! Also it matches my question better since I said "random file". Honsetly though, these days it's hard to imagine a Unix system deployed out there having GNU installed but not Perl 5.

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• Auto SSH and execute script

  - by rohanbk

  I have roughly 12 computers that each have the same script on them. This script merely pings all the other machines, and prints out whether the machine is "reachable" or "unreachable". However, it is inefficient to login to each machine manually using ssh to execute this script. Suppose I'm logged into node 1. Is there any way to for me to login to node 2-12 automatically using SSH, execute the ping script, pipe the results to a file, logout and proceed to the next machine? Some kind of bash shell script? I'm afraid I'm at a loss here since I haven't had experience with shell-scripting before.

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• Compatibility of x-www-browser

  - by rohit.arondekar

  I want to open html files from a shell script. I know that Ubuntu has a command x-www-browser that will open the default browser on the system. I also found via some Googling that the command is part of the debian system. I was wondering if the command is available on non debian based distros. If it isn't is there a standard way of opening an html file in the default browser on a linux OS via command line? Note that I'm using Bash.

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• How to use > in an xargs command?

  - by jesse

  I want to find a bash command that will let me grep every file in a directory and write the output of that grep to a separate file. My guess would have been to do something like this ls -1 | xargs -I{} "grep ABC '{}' > '{}'.out" but, as far as I know, xargs doesn't like the double-quotes. If I remove the double-quotes, however, then the command redirects the output of the entire command to a single file called '{}'.out instead of to a series of individual files. Does anyone know of a way to do this using xargs? I just used this grep scenario as an example to illustrate my problem with xargs so any solutions that don't use xargs aren't as applicable for me.

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• How to extract all IDs accessed from a mysql general log using the linux commandline?

  - by shlomoid

  This should be a trivial question for anyone who's good with bash/sed/awk. Unfortunately, I'm not, yet :) I've got a general log from MySQL which contains some queries that have a common parameter, they query on a specific id field. The queries look like update tbl set col='binary_values' where id=X; I need to process the log and extract all the IDs that these queries touched, each in it's own line. The purpose of this is to figure out how many times each ID is accessed. Eventually I'd group and count the values. The binary values are indeed binary junk, so they kinda messed up some things I've been trying to do. Eventually we solved the problem temporarily using a python script, but I'm sure the linux command line tool set can do it too. How would you do it?

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• Ending tail -f started in a shell script

  - by rangalo

  I have the following. A Java process writing logs to the stdout A shell script starting the Java process Another shell script which executes the previous one and redirects the log I check the log file with the tail -f command for the success message. Even if I have exit 0 in the code I cannot end the tail -f process. Which doesn't let my script to finish. Is there any other way of doing this in Bash? The code looks like the following. function startServer() { touch logfile startJavaprocess > logfile & tail -f logfile | while read line do if echo $line | grep -q 'Started'; then echo 'Server Started' exit 0 fi done }

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• More efficient way to find & tar millions of files

  - by Stu Thompson

  I've got a job running on my server at the command line prompt for a two days now: find data/ -name filepattern-*2009* -exec tar uf 2008.tar {} ; It is taking forever, and then some. Yes, there are millions of files in the target directory. But just running... find data/ -name filepattern-*2009* -print > filesOfInterest.txt ...takes only two hours or so. At the rate my job is running, it won't be finished for a couple of weeks.. That seems unreasonable. Is there a more efficient to do this? Maybe with a more complicated bash script? A secondary questions is "why is my current approach so slow?"

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• Combining DROP USER and DROP DATABASE with SELECT .. WHERE query?

  - by zsero

  I'd like to make a very simple thing, replicate the functionality of mysql's interactive mysql_secure_installation script. My question is that is there a simple, built-in way in MySQL to combine the output of a SELECT query with the input of a DROP user or DROP database script? For example, if I'd like to drop all users with empty passwords. How could I do that with DROP USER statement? I know an obvious solution would be to run everything for example from a Python script, run a query with mysql -Bse "select..." parse the output with some program construct the drop query run it. Is there an easy way to do it in a simple SQL query? I've seen some example here, but I wouldn't call it simple: http://stackoverflow.com/a/12097567/518169 Would you recommend making a combined query, or just to parse the output using for example Python or bash scripts/sed?

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• How can I convert a file full of unix time strings to human readable dates?

  - by skymook

  I am processing a file full of unix time strings. I want to convert them all to human readable. The file looks like so: 1153335401 1153448586 1153476729 1153494310 1153603662 1153640211 Here is the script: #! /bin/bash FILE="test.txt" cat $FILE | while read line; do perl -e 'print scalar(gmtime($line)), "\n"' done This is not working. The output I get is Thu Jan 1 00:00:00 1970 for every line. I think the line breaks are being picked up and that is why it is not working. Any ideas? I'm using Mac OSX is that makes any difference.

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• Making archive from files with same names in different directories

  - by Tim

  Hi, I have some files with same names but under different directories. For example, path1/filea, path1/fileb, path2/filea, path2/fileb,.... What is the best way to make the files into an archive? Under these directories, there are other files that I don't want to make into the archive. Off the top of my head, I think of using Bash, probably ar, tar and other commands, but am not sure how exactly to do it. Renaming the files seems to make the file names a little complicated. I tend to keep the directory structure inside the archive. Or I might be wrong. Other ideas are welcome! Thanks and regards!

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• Shell script for testing

  - by Helltone

  I want a simple testing shell script that launches a program N times in parallel, and saves each different output to a different file. I have made a start that launches the program in parallel and saves the output, but how can I keep only the outputs that are different? Also how can I actually make the echo DONE! indicate the end? #!/bin/bash N=10 for((i=1; j<=$N; ++i)); do ./test > output-$N & done echo DONE!

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• Why does this script work in the current directory but fail when placed in the path?

  - by kiloseven

  I wish to replace my failing memory with a very small shell script. #!/bin/sh if ! [ –a $1.sav ]; then mv $1 $1.sav cp $1.sav $1 fi nano $1 is intended to save the original version of a script. If the original has been preserved before, it skips the move-and-copy-back (and I use move-and-copy-back to preserve the original timestamp). This works as intended if, after I make it executable with chmod I launch it from within the directory where I am editing, e.g. with ./safe.sh filename However, when I move it into /usr/bin and then I try to run it in a different directory (without the leading ./) it fails with: *-bash: /usr/bin/safe.sh: /bin/sh: bad interpreter: Text file busy* My question is, when I move this script into the path (verified by echo $PATH) why does it then fail? D'oh? Inquiring minds want to know how to make this work.

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• processing a file full of unix time strings to human readble

  - by skymook

  I am processing a file full of unix time strings. I want to convert them all to human readable. The file looks like so: 1153335401 1153448586 1153476729 1153494310 1153603662 1153640211 Here is the script: #! /bin/bash FILE="test.txt" cat $FILE | while read line; do perl -e 'print scalar(gmtime($line)), "\n"' done This is not working. The output I get is Thu Jan 1 00:00:00 1970 for every line. I think the line breaks are being picked up and that is why it is not working. Any ideas? I'm using Mac OSX is that makes any difference.

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• Stacking standard output of `su`

  - by Kristopher Ives

  I've got some code that I wrote that uses a combination of bash and PHP command line scripting. The script is ran as root and then uses su to become various uses. I start a session like this: $result = `su SomeUser ./dothis.php` Here ./dothis.php is a script that may generate some output being stored in $result, but the problem is that there is usually output that doesn't get caught and makes it hard for me to read my script output. How can I make sure that the output is being captured within this su stacking?

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