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  • Problem with executing dssp (secondary structure assignment)

    - by Mana
    I followed a previous post to install dssp on ubuntu How to install dssp (secondary structure assignments) under 12.04? After the installation I tried to execute dssp which was in /usr/local/bin/dssp But it gave me the following error bash: /usr/local/bin/dssp: cannot execute binary file Also I tried to analyse some trajectory files from a simulation using the code do_dssp -s md.tpr -f traj.xtc But it also failed giving me the error below Reading file md.tpr, VERSION 4.5.5 (single precision) Reading file md.tpr, VERSION 4.5.5 (single precision) Segmentation fault (core dumped) Please post me a solution for this problem. Thank you!

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  • The dislikes of TDD

    - by andrewstopford
    I enjoy debates about TDD and Brian Harrys blog post is no exception. Brian sounds out what he likes and dislikes about TDD and it's the dislikes I'll focus on. The idea of having unit tests that cover virtually every line of code that I’ve written that I have to refactor every time I refactor my code makes me shudder.  Doing this way makes me take nearly twice as long as it would otherwise take and I don’t feel like I get sufficient benefits from it. Refactoring your tests to match your refactored code sounds like the tests are suffering. Too many hard dependencies with no SOLID concerns are a sure fire reason you would do this. Maybe at the start of a TDD cycle you would need to do this as your design evolves and you remove these dependencies but this should quickly be resolved as you refactor. If you find your self still doing it then stop and look back at your design. Don’t get me wrong, I’m a big fan of unit tests.  I just prefer to write them after the code has stopped shaking a bit.  In fact most of my early testing is “manual”.  Either I write a small UI on top of my service that allows me to plug in values and try it or write some quick API tests that I throw away as soon as I have validated them. The problem with this is that a UI can make assumptions on your code that then just unit test around and very quickly the design becomes bad and you technical debt sweeps in. If you want to blackbox test your code with a UI then do so after your TDD cycles not before. This is probably by biggest issue with a literal TDD interpretation.  TDD says you never write a line of code without a failing test to show you need it.  I find it leads developers down a dangerous path.  Without any help from a methodology, I have met way too many developers in my life that “back into a solution”.  By this, I mean they write something, it mostly works and they discover a new requirement so they tack it on, and another and another and when they are done, they’ve got a monstrosity of special cases each designed to handle one specific scenario.  There’s way more code than there should be and it’s way too complicated to understand. I believe in finding general solutions to problems from which all the special cases naturally derive rather than building a solution of special cases.  In my mind, to do this, you have to start by conceptualizing and coding the framework of the general algorithm.  For me, that’s a relatively monolithic exercise. TDD is an development pratice not a methodology, the danger is that the solution becomes a mass of different things that violate DRY. TDD won't solve these problems, only good communication and practices like pairing will help. Above all else an assumption that TDD replaces a methodology is a mistake, combine it with what ever works for your team\business but only good communication will help. A good naming scheme\structure for folders, files and tests can help you and your team isolate what tests are for what.

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  • Extracting the Date from a DateTime in Entity Framework 4 and LINQ

    - by Ken Cox [MVP]
    In my current ASP.NET 4 project, I’m displaying dates in a GridDateTimeColumn of Telerik’s ASP.NET Radgrid control. I don’t care about the time stuff, so my DataFormatString shows only the date bits: <telerik:GridDateTimeColumn FilterControlWidth="100px"   DataField="DateCreated" HeaderText="Created"    SortExpression="DateCreated" ReadOnly="True"    UniqueName="DateCreated" PickerType="DatePicker"    DataFormatString="{0:dd MMM yy}"> My problem was that I couldn’t get the built-in column filtering (it uses Telerik’s DatePicker control) to behave.  The DatePicker assumes that the time is 00:00:00 but the data would have times like 09:22:21. So, when you select a date and apply the EqualTo filter, you get no results. You would get results if all the time portions were 00:00:00. In essence, I wanted my Entity Framework query to give the DatePicker what it wanted… a Date without the Time portion. Fortunately, EF4 provides the TruncateTime  function. After you include Imports System.Data.Objects.EntityFunctions You’ll find that your EF queries will accept the TruncateTime function. Here’s my routine: Protected Sub RadGrid1_NeedDataSource _     (ByVal source As Object, _      ByVal e As Telerik.Web.UI.GridNeedDataSourceEventArgs) _     Handles RadGrid1.NeedDataSource     Dim ent As New OfficeBookDBEntities1     Dim TopBOMs = From t In ent.TopBom, i In ent.Items _                   Where t.BusActivityID = busActivityID _       And i.BusActivityID And t.ItemID = i.RecordID _       Order By t.DateUpdated Descending _       Select New With {.TopBomID = t.TopBomID, .ItemID = t.ItemID, _                        .PartNumber = i.PartNumber, _                        .Description = i.Description, .Notes = t.Notes, _                        .DateCreated = TruncateTime(t.DateCreated), _                        .DateUpdated = TruncateTime(t.DateUpdated)}     RadGrid1.DataSource = TopBOMs End Sub Now when I select March 14, 2011 on the DatePicker, the filter doesn’t stumble on time values that don’t make sense. Full Disclosure: Telerik gives me (and other developer MVPs) free copies of their suite.

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  • List of Microsoft training kits (2012)

    - by DigiMortal
    Some years ago I published list of Microsoft training kits for developers. Now it’s time to make a little refresh and list current training kits available. Feel free to refer additional training kits in comments. Sharepoint 2010 Developer Training Kit SharePoint 2010 and Windows Phone 7 Training Kit SharePoint and Windows Azure Development Kit Visual Studio 2010 and .NET Framework 4 Training Kit (December 2011) SQL Server 2012 Developer Training Kit SQL Server 2008 R2 Update for Developers Training Kit (May 2011 Update) SharePoint and Silverlight Training Kit Windows Phone 7 Training Kit for Developers - RTM Refresh Windows Phone 7.5 Training Kit Silverlight 4 Training Web Camps Training Kit Identity Developer Training Kit Internet Explorer 10 Training Kit Visual Studio LightSwitch Training Kit Office 2010 Developer Training Kit - June 2011 Office 365 Developer Training Kit - June 2011 Update Dynamics CRM 2011 Developer Training Kit PHP on Windows and SQL Server Training Kit (March 2011 Update) Windows Server AppFabric Training Kit Windows Server 2008 R2 Developer Training Kit - July 2009

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  • How should you approach supporting rapidly-updating web browsers?

    - by Schnapple
    Today, Firefox 5 was released. If all goes according to plan, Firefox 7 will be out by the end of the year. Firefox has adopted the Google Chrome development model wherein version numbers are largely unimportant and so just supporting "the latest (publicly available) one" is probably the best strategy. But how do you best test that? As my QA guys have pointed out, if you tell the client that you support "the latest version" but a version comes out that breaks your site, then you have a problem because now you've stated you support a web browser you don't. And since both Firefox and Chrome now update themselves automatically, the average person probably has no clue or care what version they're running. And having them either not upgrade or roll back is nontrivial. I'm finding there are a number of organizations that mandate their employees use IE (the head of IT subscribes to the Microsoft school of thought), or mandate their employees use Firefox (the head of IT subscribes to the IE-is-insecure school of thought), so Chrome updating constantly was a non-issue. But now that Firefox is a member of that club, I can see this becoming a bigger issue soon. My guess, in the case of Firefox, would be that the Aurora channel is the key, but what is the best way to approach testing it? Should we fix anything that comes up as an issue in Aurora, or should we wait until closer to the scheduled release? Do people automate this sort of thing?

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  • Where do we put "asking the world" code when we separate computation from side effects?

    - by Alexey
    According to Command-Query Separation principle, as well as Thinking in Data and DDD with Clojure presentations one should separate side effects (modifying the world) from computations and decisions, so that it would be easier to understand and test both parts. This leaves an unanswered question: where relatively to the boundary should we put "asking the world"? On the one hand, requesting data from external systems (like database, extental services' APIs etc) is not referentially transparent and thus should not sit together with pure computational and decision making code. On the other hand, it's problematic, or maybe impossible to tease them apart from computational part and pass it as an argument as because we may not know in advance which data we may need to request.

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  • How Visual WebGui helps ASP.NET Cloud-based apps

    - by Visual WebGui
    Everyone is talking about Cloud computing and moving to the cloud (public or private), but very few have actually done it so far. The reason is that the process of migrating existing applications to the cloud is a lot more complicated than one might think which is exactly where the Visual WebGui technology comes in for a rescue. In the past year the Visual WebGui R&D Team have been intensively working on a tool-based solution that gives Microsoft application developers and enterprises a simpler...(read more)

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  • Configuring thouands of related products in Magento?

    - by Anonymous -
    I'm at a stage with a Magento store I'm developing where I've added all the products (all 6000 of them) and now would like to configure related products to up my conversion rate a bit. I was wondering if there was an extension anybody knew of that functions similarly to this one, with the most current version of Magento (Community Edition, 1.6.1). If not, would anyone be able to provide some pointers for writing a script that will run through each product and add 1-5 related products. I have a fairly basic idea of taking product title text and just doing a simple text similarity query between other product titles for now, just to get some related products up there, but the Magento database isn't making a terribly large amount of sense. Thanks to anyone who can shed some light on this. :)

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  • Dude, what’s up with POP Forums vNext?

    - by Jeff
    Yeah, it has been awhile. I posted v9.2 back in January, about five months ago. That’s a real change from the release pace I had there for awhile. Let me explain what’s going on. First off, in the interim, I re-launched CoasterBuzz, which required a lot of my attention for about two of those months. That’s a good thing though, because that site is just about the best test bed I could ask for. The other thing is that I committed to make the next version use ASP.NET MVC 4, which is now at the RC stage. I didn’t think much about when they’d hit their RTW point, but RC is good enough for me. To that end, there is enough change in the next version that I recently decided to make it a major version upgrade, and finish up the loose ends and science projects to make it whole. Here’s what’s in store… Mobile views: I sat on this or a long time. Originally, I was going to use jQuery Mobile, and waited and waited for a new release, but in the end, decided against using it. Sometimes buttons would unexplainably not work, I felt like I was fighting it at times, and the CSS just felt too heavy. I rolled my own mobile sugar at a fraction of the size, and I think you’ll find it easy to modify. And it’s Metro-y, of course! Re-do of background services: A number of things run in the background, and I did quite a bit of “reimagining” of that code. It’s the weirdness of running services in a Web site context, because so many folks can’t run a bona fide service on their host’s box. The biggest change here is that these service no longer start up by default. You’ll need to call a new method from global.asax called PopForumsActivation.StartServices(). This is also a precursor to running the app in a Web farm (new data layer and caching is the second part of that). I learned about this the hard way when I had three apps using the forum library code but only one was actually the forum. The services were all running three times as often with race conditions and hits on the same data. That was particularly bad for e-mail. CSS clean up: It’s still not ideal, but it’s getting better. That’s one of those things that comes with integrating to a real site… you discover all of the dumb things you did. The mobile CSS is particularly easier to live with. Bug fixes: There are a whole lot of them. Most were minor, but it’s feeling pretty solid now. So that’s where I am. I’m going to call it v10.0, and I’m going to really put forth some effort toward finishing the mobile experience and getting through the remaining bugs. The roadmap beyond that will likely not be feature oriented, but rather work on some other things, like making it run in Azure, perhaps using SQL CE, a better install experience, etc. As usual, I’ll post the latest here. Stay tuned!

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  • Nice network diagram editor?

    - by Nicolas Raoul
    Writing a commercial proposal, I want to create a nice graphic showing the clients the architecture I thought of for their IT network, with servers, network connections, firewall, load-balancing, etc. For years I have been using dia, but I am tired of it, the results are not satisfying, very few network elements are available, and each element's graphic representation is really ugly. Question: How to create nice network diagrams? If a better set of elements was available for dia, that would be a solution.

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  • Issues installing synapse launcher

    - by George Morton
    I am trying to install synapse launcher on my desktop . I am using these two commands: sudo add-apt-repository ppa:synapse-core/ppa sudo apt-get update && sudo apt-get install synapse However I am getting an error with the second command saying E: Some index files failed to download, they have been ignored, or old ones used instead. I presume this has something to do with my connection to the hosting servers. But what I don't understand is the fact that synaptic is working it just seems to be something about that ppa. I don't know what I am doing wrong as the commands are widely suggested around the web, But they don't seem to work for me! I would greatly appreciate some advice on this as it is proving to be very frustrating. Many thanks, George

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  • Is there an Android remote app compatible with LibreOffice Impress under Ubuntu?

    - by WarriorIng64
    I have an upcoming presentation I want to make in LibreOffice Impress on my Ubuntu 12.10 laptop. I was wondering if I could get ahold of an Android app which would act like a remote control, allowing me to switch between slides from my phone over WiFi without having to stay near the laptop (I've been told I need to move around more during my presentations). A quick look on the Google Play store seemed to turn up a handful of PowerPoint remote apps for Windows or maybe Mac. I also took a look at Can an Android phone control Ubuntu like a remote?, but that seems more for controlling an Ubuntu media center. Is there anything which will work with LibreOffice Impress on Ubuntu? My phone is a Samsung Galaxy Precedent on Straight Talk, running Android 2.2.2 (latest available version from the carrier). It's not rooted, and there's not much memory on it either, so the smaller and simpler the app the better. Also, it has to be free because I currently don't have a means to pay for an app I may/may not like.

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  • Better Understand the 'Strategy' Design Pattern

    - by Imran Omar Bukhsh
    Greetings Hope you all are doing great. I have been interested in design patterns for a while and started reading 'Head First Design Patterns'. I started with the first pattern called the 'Strategy' pattern. I went through the problem outlined in the images below and first tried to propose a solution myself so I could really grasp the importance of the pattern. So my question is that why is my solution ( below ) to the problem outlined in the images below not good enough. What are the good / bad points of my solution vs the pattern? What makes the pattern clearly the only viable solution ? Thanks for you input, hope it will help me better understand the pattern. MY SOLUTION Parent Class: DUCK <?php class Duck { public $swimmable; public $quackable; public $flyable; function display() { echo "A Duck Looks Like This<BR/>"; } function quack() { if($this->quackable==1) { echo("Quack<BR/>"); } } function swim() { if($this->swimmable==1) { echo("Swim<BR/>"); } } function fly() { if($this->flyable==1) { echo("Fly<BR/>"); } } } ?> INHERITING CLASS: MallardDuck <?php class MallardDuck extends Duck { function MallardDuck() { $this->quackable = 1; $this->swimmable = 1; } function display() { echo "A Mallard Duck Looks Like This<BR/>"; } } ?> INHERITING CLASS: WoddenDecoyDuck <?php class WoddenDecoyDuck extends Duck { function woddendecoyduck() { $this->quackable = 0; $this->swimmable = 0; } function display() { echo "A Wooden Decoy Duck Looks Like This<BR/>"; } } Thanking you for your input. Imran

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  • First impressions of Scala

    - by Scott Weinstein
    I have an idea that it may be possible to predict build success/failure based on commit data. Why Scala? It’s a JVM language, has lots of powerful type features, and it has a linear algebra library which I’ll need later. Project definition and build Neither maven or the scala build tool (sbt) are completely satisfactory. This maven **archetype** (what .Net folks would call a VS project template) mvn archetype:generate `-DarchetypeGroupId=org.scala-tools.archetypes `-DarchetypeArtifactId=scala-archetype-simple `-DremoteRepositories=http://scala-tools.org/repo-releases `-DgroupId=org.SW -DartifactId=BuildBreakPredictor gets you started right away with “hello world” code, unit tests demonstrating a number of different testing approaches, and even a ready made `.gitignore` file - nice! But the Scala version is behind at v2.8, and more seriously, compiling and testing was painfully slow. So much that a rapid edit – test – edit cycle was not practical. So Lab49 colleague Steve Levine tells me that I can either adjust my pom to use fsc – the fast scala compiler, or use sbt. Sbt has some nice features It’s fast – it uses fsc by default It has a continuous mode, so  `> ~test` will compile and run your unit test each time you save a file It’s can consume (and produce) Maven 2 dependencies the build definition file can be much shorter than the equivalent pom (about 1/5 the size, as repos and dependencies can be declared on a single line) And some real limitations Limited support for 3rd party integration – for instance out of the box, TeamCity doesn’t speak sbt, nor does IntelliJ IDEA Steeper learning curve for build steps outside the default Side note: If a language has a fast compiler, why keep the slow compiler around? Even worse, why make it the default? I choose sbt, for the faster development speed it offers. Syntax Scala APIs really like to use punctuation – sometimes this works well, as in the following map1 |+| map2 The `|+|` defines a merge operator which does addition on the `values` of the maps. It’s less useful here: http(baseUrl / url >- parseJson[BuildStatus] sure you can probably guess what `>-` does from the context, but how about `>~` or `>+`? Language features I’m still learning, so not much to say just yet. However case classes are quite usefull, implicits scare me, and type constructors have lots of power. Community A number of projects, such as https://github.com/scalala and https://github.com/scalaz/scalaz are split between github and google code – github for the src, and google code for the docs. Not sure I understand the motivation here.

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  • New Visual Studio 2012 Project Templates for DotNetNuke

    - by Chris Hammond
    Earlier this month Microsoft put the bits up for Visual Studio 2012 RTM out on MSDN Subscriber downloads, and during the first two weeks of September they will officially be releasing Visual Studio 2012. I started working with VS2012 late in the release candidate cycle, doing some DNN module development using my templates at http://christoctemplate.codeplex.com . These templates work fine in Visual Studio 2012 from my testing, but they still face the same problem that they had in Visual Studio 2008...(read more)

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  • What's the best license for my website?

    - by John Maxim
    I have developed a unique website but do not have a lot of fund to protect it with trademark or patents. I'm looking for suggestions so that when my supervisor gets my codes, some laws restrict anyone from copying it and claim their work. I'm in the middle of thinking, making the application a commercial one or never allowing it to be copied at all. What kind of steps am I required to take in order to make full measurements so my applications are fully-protected? I've come across a few, one under my consideration is MIT license. Some say we can have a mixture of both commercial and MIT. I would also like to be able to distribute some functions so it can be modified by others but I'd still retain the ownership. Last but not least, it's confusing when I think of protecting the whole website, and protecting codes by codes in division. How should we go about this? Thanks. N.B I have to pass it over to the supervisor as this is a Uni project. I need this to be done within 2 weeks. So time to get my App protected is a factor here.

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  • Find CheckBox from GridView in Content Page/Master Page

    - by Suthish Nair
    How to find a control from GridView which resides in Content Page Here the example using to find the CheckBox, hope this will help you all... .aspx code <asp:Content ID="Content2" ContentPlaceHolderID="MainContent" Runat="Server"> <asp:GridView ID="GridView1" runat="server"> <Columns> <asp:TemplateField> <ItemTemplate> <asp:CheckBox ID="chkID" runat="server" /> </ItemTemplate> </asp...(read more)

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  • Application for taking pretty screenshots (like OS X does)

    - by Oli
    I've been building a website for a guy who uses Mac OS X and occasionally he sends me screenshots of bugs. They come out looking like this: This is fairly typical of Mac screenshots. You get the window decorations, the shadow from the window and a white or transparent background (not the desktop wallpaper -- I've checked). Compare this to an Ubuntu window-shot (Alt+Print screen): It's impossible to keep a straight face and say the Ubuntu one anywhere near as elegant. My question is: Is there an application that can do this in Ubuntu? Edit: Follow up: Is there an application that can do this in one move? Shutter is pretty good but running the plugin for every screenshot is pretty tiresome as it doesn't seem to remember my preference (I want south-shadow and that requires selecting south, then clicking refresh, then save) and it's more clicks than I'd like. Is there a simple way of telling shutter I want south-shadow for all screenshots (except entire desktop and area-selection)?

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  • T-4 Templates for ASP.NET Web Form Databound Control Friendly Logical Layers

    - by joycsharp
    I just released an open source project at codeplex, which includes a set of T-4 templates to enable you to build logical layers (i.e. DAL/BLL) with just few clicks! The logical layers implemented here are  based on Entity Framework 4.0, ASP.NET Web Form Data Bound control friendly and fully unit testable. In this open source project you will get Entity Framework 4.0 based T-4 templates for following types of logical layers: Data Access Layer: Entity Framework 4.0 provides excellent ORM data access layer. It also includes support for T-4 templates, as built-in code generation strategy in Visual Studio 2010, where we can customize default structure of data access layer based on Entity Framework. default structure of data access layer has been enhanced to get support for mock testing in Entity Framework 4.0 object model. Business Logic Layer: ASP.NET web form based data bound control friendly business logic layer, which will enable you few clicks to build data bound web applications on top of ASP.NET Web Form and Entity Framework 4.0 quickly with great support of mock testing. Download it to make your web development productive. Enjoy!

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  • I tried to transplant the wireless_tools to Android4.0 system, but I have a problem with Java

    - by Chen Guoli
    My Linux system is Ubuntu Kylin, a new branch of Ubuntu spreading mainly in China. I have changed some files, such as wireless.22.h, ifrename.c and iwlib.h, in wireless_tools.29/ which is located in Android4.0 root directory. Then I followed these steps: $ cd ~/Android4.0 $ su $[key](change to root) root# source build/envsetup.sh root# cd ~/Android4.0/wireless_tools.2.9/ root# mm Then I got a message telling me that: Your version is: java version "1.7.0_21". The correct version is: Java SE 1.6. Then I did as How can I uninstall my current java and install sun java 1.6 The java was installed successfully, but when i tried mm again: Your version is: java version "1.6.0_27". The correct version is: Java SE 1.6. Then I tried https://source.android.com/source/initializing.html , but it didn't work. How can I install "java SE 1.6." correctly?

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  • Writing C# Code Using SOLID Principles

    - by bipinjoshi
    Most of the modern programming languages including C# support objected oriented programming. Features such as encapsulation, inheritance, overloading and polymorphism are code level features. Using these features is just one part of the story. Equally important is to apply some object oriented design principles while writing your C# code. SOLID principles is a set of five such principles--namely Single Responsibility Principle, Open/Closed Principle, Liskov Substitution Principle, Interface Segregation Principle and Dependency Inversion Principle. Applying these time proven principles make your code structured, neat and easy to maintain. This article discusses SOLID principles and also illustrates how they can be applied to your C# code.http://www.binaryintellect.net/articles/7f857089-68f5-4d76-a3b7-57b898b6f4a8.aspx 

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  • Errors while updating Ubuntu 13.10

    - by santiago
    When I execute the updater it always throws the same error saying: Failed to download repository information. Check your internet connection. And when I run the sudo apt-get update I get these lines at the end: W: Failed to fetch cdrom://Ubuntu 13.10 Saucy Salamander - Release i386 (20131016.1)/dists/saucy/main/binary-i386/Packages Please use apt-cdrom to make this CD-ROM recognized by APT. apt-get update cannot be used to add new CD-ROMs W: Failed to fetch cdrom://Ubuntu 13.10 Saucy Salamander - Release i386 (20131016.1)/dists/saucy/restricted/binary-i386/Packages Please use apt-cdrom to make this CD-ROM recognized by APT. apt-get update cannot be used to add new CD-ROMs W: Failed to fetch http://ppa.launchpad.net/tiheum/equinox/ubuntu/dists/saucy/main/source/Sources 404 Not Found W: Failed to fetch http://ppa.launchpad.net/tiheum/equinox/ubuntu/dists/saucy/main/binary-i386/Packages 404 Not Found E: Some index files failed to download. They have been ignored, or old ones used instead

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  • Show #14 DotNetNuke 5.6.1, Razor/Webmatrix and WebCamps

    - by Chris Hammond
    Once again, it’s been far too long since the last show, this time just over 4 months, For Show #14 I am joined by Joe Brinkman. Take a listen and see what has been going on in the DNN world. Length: 47:56 Size: 43.8mb MP3 Download Welcome back to DNNVoice Welcome to guest Joe Brinkman ( http://blog.theaccidentalgeek.com/ ) Introduction to Joe and Welcome back from Chris Hammond ( http://www.chrishammond.com ) and what he's been doing DotNetNuke Training Free Extensions Module Development Templates...(read more)

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  • Using old code on new version of Visual Studio [migrated]

    - by Tu Tran
    I have a project which was started from 90s in C/C++. Therefore, it contains many old coding styles such as K&R-style function declaration, obsolete function, ... The project works fine in Visual Studio 2008, but now I want to use it in the new version of Visual Studio (specifically VS 2010) because we have other projects in Visual Studio 2010/2012. I don't want to have too many versions of Visual Studio on my machine. When I try to compile the old project, Visual Studio throws too many errors. I can fix all of them but I am scared to edit the source code and I want other people to be able to pen it in the old version of VS too. I want the project to remain backwards compatible with VS. My question is how to use the old code in Visual Studio 2010/2012 without changing the code. Or if necessary how do I just fix a few lines of code, but make sure it won't cause an error if someone else opens that code in the older version of VS. Is there a way to tell newer Visual Studio versions to use older compiler flags or something like that?

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