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  • PyML 0.7.2 - How to prevent accuracy from dropping after stroing/loading a classifier?

    - by Michael Aaron Safyan
    This is a followup from "Save PyML.classifiers.multi.OneAgainstRest(SVM()) object?". The solution to that question was close, but not quite right, (the SparseDataSet is broken, so attempting to save/load with that dataset container type will fail, no matter what. Also, PyML is inconsistent in terms of whether labels should be numbers or strings... it turns out that the oneAgainstRest function is actually not good enough, because the labels need to be strings and simultaneously convertible to floats, because there are places where it is assumed to be a string and elsewhere converted to float) and so after a great deal of hacking and such I was finally able to figure out a way to save and load my multi-class classifier without it blowing up with an error.... however, although it is no longer giving me an error message, it is still not quite right as the accuracy of the classifier drops significantly when it is saved and then reloaded (so I'm still missing a piece of the puzzle). I am currently using the following custom mutli-class classifier for training, saving, and loading: class SVM(object): def __init__(self,features_or_filename,labels=None,kernel=None): if isinstance(features_or_filename,str): filename=features_or_filename; if labels!=None: raise ValueError,"Labels must be None if loading from a file."; with open(os.path.join(filename,"uniquelabels.list"),"rb") as uniquelabelsfile: self.uniquelabels=sorted(list(set(pickle.load(uniquelabelsfile)))); self.labeltoindex={}; for idx,label in enumerate(self.uniquelabels): self.labeltoindex[label]=idx; self.classifiers=[]; for classidx, classname in enumerate(self.uniquelabels): self.classifiers.append(PyML.classifiers.svm.loadSVM(os.path.join(filename,str(classname)+".pyml.svm"),datasetClass = PyML.VectorDataSet)); else: features=features_or_filename; if labels==None: raise ValueError,"Labels must not be None when training."; self.uniquelabels=sorted(list(set(labels))); self.labeltoindex={}; for idx,label in enumerate(self.uniquelabels): self.labeltoindex[label]=idx; points = [[float(xij) for xij in xi] for xi in features]; self.classifiers=[PyML.SVM(kernel) for label in self.uniquelabels]; for i in xrange(len(self.uniquelabels)): currentlabel=self.uniquelabels[i]; currentlabels=['+1' if k==currentlabel else '-1' for k in labels]; currentdataset=PyML.VectorDataSet(points,L=currentlabels,positiveClass='+1'); self.classifiers[i].train(currentdataset,saveSpace=False); def accuracy(self,pts,labels): logger=logging.getLogger("ml"); correct=0; total=0; classindexes=[self.labeltoindex[label] for label in labels]; h=self.hypotheses(pts); for idx in xrange(len(pts)): if h[idx]==classindexes[idx]: logger.info("RIGHT: Actual \"%s\" == Predicted \"%s\"" %(self.uniquelabels[ classindexes[idx] ], self.uniquelabels[ h[idx] ])); correct+=1; else: logger.info("WRONG: Actual \"%s\" != Predicted \"%s\"" %(self.uniquelabels[ classindexes[idx] ], self.uniquelabels[ h[idx] ])) total+=1; return float(correct)/float(total); def prediction(self,pt): h=self.hypothesis(pt); if h!=None: return self.uniquelabels[h]; return h; def predictions(self,pts): h=self.hypotheses(self,pts); return [self.uniquelabels[x] if x!=None else None for x in h]; def hypothesis(self,pt): bestvalue=None; bestclass=None; dataset=PyML.VectorDataSet([pt]); for classidx, classifier in enumerate(self.classifiers): val=classifier.decisionFunc(dataset,0); if (bestvalue==None) or (val>bestvalue): bestvalue=val; bestclass=classidx; return bestclass; def hypotheses(self,pts): bestvalues=[None for pt in pts]; bestclasses=[None for pt in pts]; dataset=PyML.VectorDataSet(pts); for classidx, classifier in enumerate(self.classifiers): for ptidx in xrange(len(pts)): val=classifier.decisionFunc(dataset,ptidx); if (bestvalues[ptidx]==None) or (val>bestvalues[ptidx]): bestvalues[ptidx]=val; bestclasses[ptidx]=classidx; return bestclasses; def save(self,filename): if not os.path.exists(filename): os.makedirs(filename); with open(os.path.join(filename,"uniquelabels.list"),"wb") as uniquelabelsfile: pickle.dump(self.uniquelabels,uniquelabelsfile,pickle.HIGHEST_PROTOCOL); for classidx, classname in enumerate(self.uniquelabels): self.classifiers[classidx].save(os.path.join(filename,str(classname)+".pyml.svm")); I am using the latest version of PyML (0.7.2, although PyML.__version__ is 0.7.0). When I construct the classifier with a training dataset, the reported accuracy is ~0.87. When I then save it and reload it, the accuracy is less than 0.001. So, there is something here that I am clearly not persisting correctly, although what that may be is completely non-obvious to me. Would you happen to know what that is?

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  • JasperReports-Ireport: How to make the groupfield don't gets repeated every 3rows of fields?

    - by Aaron
    I have a web app and I need to integrate some JasperReports in this app. So I downloaded iReport and I used the templates. I choose the LeafGreen template, but I have a problem. When I have more than 4 elemets in my list, my headers gets repeated every 4 elements (see the image:) - I don't want this; once is enough. The problem: http://i39.tinypic.com/9kcp6p.jpg This is the template: hxtp://i44.tinypic.com/2ags1w1.jpg What I'm doing wrong?

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  • AJAX URL request doesn't work from desktop

    - by Aaron
    Running this simple AJAX with WAMP localhost I can pull JSON from a web address. $(document).ready(function(){ $.ajax({ url: 'http://time.jsontest.com/', dataType: 'jsonp', success: function(json) { console.log(json); } }); }); However I cannot connect if I try running normally through a browser, why is that? Google CDN: <src="//ajax.googleapis.com/ajax/libs/jquery/1.10.1/jquery.min.js">

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  • CSharp -- PInvokeStackImbalance detected on a well documented function?

    - by Aaron Hammond
    Here is my code for a ClickMouse() function: [DllImport("user32.dll", CharSet = CharSet.Auto, CallingConvention = CallingConvention.StdCall)] public static extern void mouse_event(long dwFlags, long dx, long dy, long cButtons, long dwExtraInfo); private const long MOUSEEVENTF_LEFTDOWN = 0x02; private const long MOUSEEVENTF_LEFTUP = 0x04; private const long MOUSEEVENTF_RIGHTDOWN = 0x08; private const long MOUSEEVENTF_RIGHTUP = 0x10; private void ClickMouse() { long X = Cursor.Position.X; long Y = Cursor.Position.Y; mouse_event(MOUSEEVENTF_LEFTDOWN | MOUSEEVENTF_LEFTUP, X, Y, 0, 0); } For some reason, when my program comes to this code, it throws this error message: PInvokeStackImbalance was detected Message: A call to PInvoke function 'WindowsFormsApplication1!WindowsFormsApplication1.Form1::mouse_event' has unbalanced the stack. This is likely because the managed PInvoke signature does not match the unmanaged target signature. Check that the calling convention and parameters of the PInvoke signature match the target unmanaged signature. Please help?

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  • OdbcCommand on Stored Procedure - "Parameter not supplied" error on Output parameter

    - by Aaron
    I'm trying to execute a stored procedure (against SQL Server 2005 through the ODBC driver) and I recieve the following error: Procedure or Function 'GetNodeID' expects parameter '@ID', which was not supplied. @ID is the OUTPUT parameter for my procedure, there is an input @machine which is specified and is set to null in the stored procedure: ALTER PROCEDURE [dbo].[GetNodeID] @machine nvarchar(32) = null, @ID int OUTPUT AS BEGIN SET NOCOUNT ON; IF EXISTS(SELECT * FROM Nodes WHERE NodeName=@machine) BEGIN SELECT @ID = (SELECT NodeID FROM Nodes WHERE NodeName=@machine) END ELSE BEGIN INSERT INTO Nodes (NodeName) VALUES (@machine) SELECT @ID = (SELECT NodeID FROM Nodes WHERE NodeName=@machine) END END The following is the code I'm using to set the parameters and call the procedure: OdbcCommand Cmd = new OdbcCommand("GetNodeID", _Connection); Cmd.CommandType = CommandType.StoredProcedure; Cmd.Parameters.Add("@machine", OdbcType.NVarChar); Cmd.Parameters["@machine"].Value = Environment.MachineName.ToLower(); Cmd.Parameters.Add("@ID", OdbcType.Int); Cmd.Parameters["@ID"].Direction = ParameterDirection.Output; Cmd.ExecuteNonQuery(); _NodeID = (int)Cmd.Parameters["@Count"].Value; I've also tried using Cmd.ExecuteScalar with no success. If I break before I execute the command, I can see that @machine has a value. If I execute the procedure directly from Management Studio, it works correctly. Any thoughts? Thanks

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  • Hibernate-Search: How to search dates?

    - by Aaron
    @Entity @Table(name = "USERS") public class User { @Id @GeneratedValue(strategy = GenerationType.AUTO) private long id; @Column(name = "USERNAME", nullable = false, length = 20) private String userName; @Column(name = "PASSWORD", nullable = false, length = 10) private String password; @Column(name = "Date", nullable = false ) private Date date; } How can I select the records which have the date between [now | now-x hours] [now | now-x days] [now | now-x months] [now | now-x years]

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  • Bash script "read" not pausing for user input when executed from SSH shell

    - by Aaron Hancock
    I'm new to Bash scripting, so please be gentle. I'm connected to a Ubuntu server via SSH (PuTTY) and when I run this command, I expect the bash script that downloads and executes to allow user input and then echo that input. It seems to just write out the echo label for the input request and terminate. wget -O - https://raw.github.com/aaronhancock/pub/master/bash/readtest.sh | bash Any clue what I might be doing wrong? UPDATE: This bash command does exactly what I wanted bash <(wget -q -O - https://raw.github.com/aaronhancock/pub/master/bash/readtest.sh)

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  • Counting multiple entries in a MySQL database?

    - by Aaron
    Hi all, I'm trying to count multiple entries in a MySQL database, I know how to use COUNT(), but the exact syntax I want to get the results I need eludes me. The problem: Table structure: ID, CODE, AUTHOR, COUNTRY, TIMESTAMP. Code, Author and Country overlap many times in the table. I am trying to discover if there is one simple query that can be ran to return (using WHERE clause on COUNTRY) the author field, the code field, and then a final field that counts the number of times the CODE was present in the query result. So, theoretically I could end up with an array like: array('author', 'code', 'codeAppearsNTimes'); Authors also have varying codes associated with them, so I don't want the results merged. I suppose the end result would be: 'This author is associated with this code this many times'. Is this possible with MySQL? Thanks in advance.

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  • Storing an object to use in multiple classes

    - by Aaron Sanders
    I am wondering the best way to store an object in memory that is used in a lot of classes throughout an application. Let me set up my problem for you: We have multiple databases, 1 per customer. We also have a master table and each row is detailed information about the databases such as database name, server IP it's located and a few config settings. I have an application that loops through those multiple databases and runs some updates on them. The settings I mentioned above are updated each loop iteration into memory. The application then runs through series of processes that include multiple classes using this data. The data never changes during the processes, only during the loop iteration. The variables are related to a customer, so I have them stored in a customer class. I suppose I could make all of the members shared or should I use a singleton for the customer class? I've never actually used a singleton, only read they are good in this type of situation. Are there better solutions to this type of scenario? Also, I could have plans for this application to be multithreaded later. Sorry if this is confusing. If you have questions, let me know and I will answer them. Thanks for your help.

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  • Drupal: CCK API Docs

    - by Aaron
    Any good CCK API docs out there? I have seen http://api.audean.com/, but can't find what I want there. Basically, I need a function that takes a field name and returns what node type has that field. I wrote my own, but would rather make an API call.

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  • Python access an object byref / Need tagging

    - by Aaron C. de Bruyn
    I need to suck data from stdin and create a object. The incoming data is between 5 and 10 lines long. Each line has a process number and either an IP address or a hash. For example: pid=123 ip=192.168.0.1 - some data pid=123 hash=ABCDEF0123 - more data hash=ABCDEF123 - More data ip=192.168.0.1 - even more data I need to put this data into a class like: class MyData(): pid = None hash = None ip = None lines = [] I need to be able to look up the object by IP, HASH, or PID. The tough part is that there are multiple streams of data intermixed coming from stdin. (There could be hundreds or thousands of processes writing data at the same time.) I have regular expressions pulling out the PID, IP, and HASH that I need, but how can I access the object by any of those values? My thought was to do something like this: myarray = {} for each line in sys.stdin.readlines(): if pid and ip: #If we can get a PID out of the line myarray[pid] = MyData().pid = pid #Create a new MyData object, assign the PID, and stick it in myarray accessible by PID. myarray[pid].ip = ip #Add the IP address to the new object myarray[pid].lines.append(data) #Append the data myarray[ip] = myarray[pid] #Take the object by PID and create a key from the IP. <snip>do something similar for pid and hash, hash and ip, etc...</snip> This gives my an array with two keys (a PID and an IP) and they both point to the same object. But on the next iteration of the loop, if I find (for example) an IP and HASH and do: myarray[hash] = myarray[ip] The following is False: myarray[hash] == myarray[ip] Hopefully that was clear. I hate to admit that waaay back in the VB days, I remember being able handle objects byref instead of byval. Is there something similar in Python? Or am I just approaching this wrong?

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  • perl hashes - comparing keys and values

    - by Aaron Moodie
    I've been reading over the perl doc, but I can't quite get my head around hashes. I'm trying to find if a hash key exists, and if so, compare is't value. The thing that is confusing me is that my searches say that you find if a key exists by if (exists $files{$key}) , but that $files{$key} also gives the value? the code i'm working on is: foreach my $item(@new_contents) { next if !-f "$directory/$item"; my $date_modified = (stat("$directory/$item"))[9]; if (exists $files{$item}) { if ($files{$item} != $date_modified { $files{$item} = $date_modified; print "$item has been modified\n"; } } else { $files{$item} = $date_modified; print "$item has been added\n"; } }

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  • How to get all paths in drupal install

    - by Aaron
    Hi, I need to write a module that gives me a page will all possible paths in a drupal install, including orphaned pages. (site map won't work for that). I can query the url_alias table for aliases, and I can query the menu_router table for all paths, even ones set in page/feed displays in views. But, variable paths (those with arguments) get interpreted at run-time. So, is there a way to get all possible paths in a drupal install, including dynamic paths and orphans? It's catch22. I have to know all the urls ahead of time to get them.

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  • Opinion on "loop invariants", and are these frequently used in the industry?

    - by Michael Aaron Safyan
    I was thinking back to my freshman year at college (five years ago) when I took an exam to place-out of intro-level computer science. There was a question about loop invariants, and I was wondering if loop invariants are really necessary in this case or if the question was simply a bad example... the question was to write an iterative definition for a factorial function, and then to prove that the function was correct. The code that I provided for the factorial function was as follows: public static int factorial(int x) { if ( x < 0 ){ throw new IllegalArgumentException("Parameter must be = 0"); }else if ( x == 0 ){ return 1; }else{ int result = 1; for ( int i = 1; i <= x; i++ ){ result*=i; } return result; } } My own proof of correctness was a proof by cases, and in each I asserted that it was correct by definition (x! is undefined for negative values, 0! is 1, and x! is 1*2*3...*x for a positive value of x). The professor wanted me to prove the loop using a loop invariant; however, my argument was that it was correct "by definition", because the definition of "x!" for a positive integer x is "the product of the integers from 1... x", and the for-loop in the else clause is simply a literal translation of this definition. Is a loop invariant really needed as a proof of correctness in this case? How complicated must a loop be before a loop invariant (and proper initialization and termination conditions) become necessary for a proof of correctness? Additionally, I was wondering... how often are such formal proofs used in the industry? I have found that about half of my courses are very theoretical and proof-heavy and about half are very implementation and coding-heavy, without any formal or theoretical material. How much do these overlap in practice? If you do use proofs in the industry, when do you apply them (always, only if it's complicated, rarely, never)?

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  • Skip Checkout in Magento for a downloadable product

    - by Aaron Newton
    Hello Magento boffins. I am using Magento to build an eBooks site. For the release, we plan to have a number of free downloadable books. We were hoping that it would be possible to use the normal Magento 'catalog' functionality to add categories with products underneath. However, since these are free downloadable products, it doesn't really make sense to send users through the checkout when they try to download. Does anyone know of a way to create a free downloadable product which bypasses the checkout altogether? I have noticed that there is a 'free sample' option for downloadable products, but I would prefer not to use this if I can as I plan to use this field for its intended purpose when I add paid products. [EDIT] I have noticed that some of you have voted this question down for 'lack of question clarity'. For clarity, I want: to know if it is possible to create a downloadable product in Magento which doesn't require users to go through the usual checkout process (since it is free) and which is not the 'Free Sample' field of a downloadable product Unfortunately I don't think I can ask this any more eloquently. [/EDIT]

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  • Truncate all tables in postgres database

    - by Aaron
    I regularly need to delete all the data from my postgresql database before a rebuild. How would I do this directly in SQL? At the moment I've managed to come up with a SQL statement that returns all the commands I need to execute: SELECT 'TRUNCATE TABLE ' || tablename || ';' FROM pg_tables WHERE tableowner='MYUSER'; but I cant see a way to execute them programatically once I have them... Thanks in advance

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  • Loading a SWF dynamically causes previously loaded SWFs to misbehave

    - by Aaron
    I have run into a very strange problem with Flash and Flex. It appears that under certain circumstances, movie clips from a SWF loaded at runtime (using Loader) cannot be instantiated if another SWF has been loaded in the mean time. Here is the complete code for a program that reproduces the error. It is compiled using mxmlc, via Ensemble Tofino: package { import flash.display.*; import flash.events.*; import flash.net.*; import flash.system.*; public class DynamicLoading extends Sprite { private var testAppDomain:ApplicationDomain; public function DynamicLoading() { var request:URLRequest = new URLRequest("http://localhost/content/test.swf"); var loader:Loader = new Loader(); loader.contentLoaderInfo.addEventListener(Event.COMPLETE, onTestLoadComplete); loader.load(request); } private function onTestLoadComplete(e:Event):void { var loaderInfo:LoaderInfo = LoaderInfo(e.target); testAppDomain = loaderInfo.applicationDomain; // To get the error, uncomment these lines... //var request:URLRequest = new URLRequest("http://localhost/content/tiny.swf"); //var loader:Loader = new Loader(); //loader.contentLoaderInfo.addEventListener(Event.COMPLETE, onTinyLoadComplete); //loader.load(request); // ...and comment this one: onTinyLoadComplete(); } private function onTinyLoadComplete(e:Event = null):void { var spriteClass:Class = Class(testAppDomain.getDefinition("TopSymbol")); var sprite:Sprite = Sprite(new spriteClass()); sprite.x = sprite.y = 200; addChild(sprite); } } } With the second loading operation commented out as shown above, the code works. However, if the second loading operation is uncommented and onTinyLoadComplete runs after the second SWF is loaded, the line containing new spriteClass() fails with the following exception: TypeError: Error #1034: Type Coercion failed: cannot convert flash.display::MovieClip@2dc8ba1 to SubSymbol. at flash.display::Sprite/constructChildren() at flash.display::Sprite() at flash.display::MovieClip() at TopSymbol() at DynamicLoading/onTinyLoadComplete()[C:\Users\...\TestFlash\DynamicLoading.as:38] test.swf and tiny.swf were created in Flash CS4. test.swf contains two symbols, both exported for ActionScript, one called TopSymbol and one called SubSymbol. SubSymbol contains a simple graphic (a scribble) and TopSymbol contains a single instance of SubSymbol. tiny.swf contains nothing; it is the result of publishing a new, empty ActionScript 3 project. If I modify test.swf so that SubSymbol is not exported for ActionScript, the error goes away, but in our real project we need the ability to dynamically load sprite classes that contain other, exported sprite classes as children. Any ideas as to what is causing this, or how to fix it?

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  • jQuery element with multiple classes: storing one class as a var

    - by Aaron
    I'm trying to create a standardized show/hide element system, like so: <div class="opener popup_1">Click Me</div> <div class="popup popup_1">I'm usually hidden</div> Clicking on the div with the opener class should show() the div with the popup class. I don't know how many opener/popup combinations I'm going to have on any given page, I don't know where on any given page the opener and the popup are going to be displayed, and I don't know how many popups a given opener should call show() for. Both the opener and the popup have to be able to have more classes than just what's used by jQuery. What I'd like to do is something like this: $(".opener").click(function() { var openerTarget = $(this).attr("class").filter(function() { return this.class.match(/^popup_([a-zA-Z0-9-_\+]*) ?$/); }); $(".popup." + openerTarget).show(); The idea is that when you click on an opener, it filters out "popup_whatever" from opener's classes and stores that as openerTarget. Then anything with class=popup and openerTarget will be shown.

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  • Using diff and patch to force one local code base to look like another

    - by Dave Aaron Smith
    I've noticed this strange behavior of diff and patch when I've used them to force one code base to be identical to another. Let's say I want to update update_me to look identical to leave_unchanged. I go to update_me. I run a diff from leave_unchanged to update_me. Then I patch the diff into update_me. If there are new files in leave_unchanged, patch asks me if my patch was reversed! If I answer yes, it deletes the new files in leave_unchanged. Then, if I simply re-run the patch, it correctly patches update_me. Why does patch try to modify both leave_unchanged and update_me? What's the proper way to do this? I found a hacky way which is to replace all +++ lines with nonsense paths so patch can't find leave_unchanged. Then it works fine. It's such an ugly solution though. $ mkdir copyfrom $ mkdir copyto $ echo "Hello world" > copyfrom/myFile.txt $ cd copyto $ diff -Naur . ../copyfrom > my.diff $ less my.diff diff -Naur ./myFile.txt ../copyfrom/myFile.txt --- ./myFile.txt 1969-12-31 19:00:00.000000000 -0500 +++ ../copyfrom/myFile.txt 2010-03-15 17:21:22.000000000 -0400 @@ -0,0 +1 @@ +Hello world $ patch -p0 < my.diff The next patch would create the file ../copyfrom/myFile.txt, which already exists! Assume -R? [n] yes patching file ../copyfrom/myFile.txt $ patch -p0 < my.diff patching file ./myFile.txt

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  • Is there a pretty print for PHP?

    - by Aaron Lee
    I'm fixing some PHP scripts and I'm missing ruby's pretty printer. i.e. require 'pp' arr = {:one => 1} pp arr will output {:one = 1}. This even works with fairly complex objects and makes digging into an unknown script much easier. Is there some way to duplicate this functionality in PHP?

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  • Drupal Module Development: How to Communicate between form_submit and page handler functions

    - by Aaron
    I am writing a module and I need to retrieve values set in a form_submit function from a page handler function. The reason is that I am rendering results of a form submit on the same page as the page handler. I have this working, but I am using global variables, which I don't like. I'd like to be able to use the $form_state['storage'] for this, but can't since I don't have access to the $form_state variable from the page handler. Any suggestions?

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