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  • How to extract a couple marked strings from a line (python)

    - by GoJian
    My Friends, I spent quite some time on this one... but cannot yet figure out a better way to do it. I am coding in python, by the way. So, here is a line of text in a file I am working with, for example: "ref|ZP_01631227.1| 3-dehydroquinate synthase [Nodularia spumigena CCY9414]..." How can I extract the two strings "ZP_01631227.1" and "Nodularia spumigena CCY9414" from the line? The pairs of "| |" and brackets are like markers so we know we want to get the strings in between the two... I guess I can probably loop over all the characters in the line and do it the hard way. It just takes so much time... Wondering if there is a python library or other smart ways to do it nicely? Thanks to all!

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  • get entire line with java.util.scanner.hasNext(regex)

    - by Hussain
    I'm doing something in Java that requires input to be matched against the pattern ^[1-5]$. I should have a while loop looping through each line of input, checking it against the pattern, and outputting an error message if it does not. Sudo code: while (regex_match(/^[^1-5]$/,inputLine)) { print ("Please enter a number between 1 and 5! "); getNextInputLine(); } I can use java.util.Scanner.hasMatch("^[^1-5]$"), but that will only match a single token, not the entire line. Any idea on how to make hasMatch match against the entire line? (Setting the delimiter to "\n" or "\0" doesn't work.)

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  • Perl: print back to beginning of line

    - by Pmarcoen
    Okay, so what I'm trying to do is print out a percentage complete to my command line, now, I would like this to simply 'update' the number shown on the screen. So somehow go back to the beginning of the line and change it. For example the windows relog.exe command-line utility (which can convert a .blg file to a .csv file) does this. If you run it, it will display a percentage complete. Now this is probably written in C++. I don't know if this is possible in perl as well ?

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  • How to animate the command line?

    - by The.Anti.9
    I have always wondered how people update a previous line in a command line. a great example of this is when using the wget command in linux. It creates an ASCII loading bar of sorts that looks like this: [======                    ] 37% and of course the loading bar moves and the percent changes, But it doesn't make a new line. I cannot figure out how to do this. Can someone point me in the right direction?

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  • antlr line after line processing

    - by pawloch
    I'm writing simple language in ANTLR, and I'd like to write shell where I can put line of code, hit ENTER and have it executed, enter another line, and have it executed. I have already written grammar which execute all alines of input at one. Example input: int a,b,c; string d; string e; d=\"dziala\"; a=4+7; b=a+33; c=(b/11)*2; grammar Kalkulator; options { language = Java; output=AST; ASTLabelType=CommonTree; } tokens { NEG; } @header { package lab4; } @lexer::header { package lab4; } line : (assignment | declaration)* EOF ; declaration : type^ IDENT (','! IDENT)* ';'! ; type : 'int' | 'string' ; assignment : IDENT '='^ expression ';'! ; term : IDENT | INTEGER | STRING_LITERAL | '('! expression ')'! ; unary : (( negation^ | '+'! ))* term ; negation : '-' -> NEG ; mult : unary ( ('*'^ | '/'^) unary )* ; exp2 :mult ( ('-'^ | '+'^) mult)* ; expression : exp2 ('&'^ exp2)* ; fragment LETTER : ('a'..'z'|'A'..'Z'); fragment DIGIT : '0'..'9'; INTEGER : DIGIT+; IDENT : LETTER (LETTER | DIGIT)* ; WS : (' ' | '\t' | '\n' | '\r' | '\f')+ {$channel=HIDDEN;}; STRING_LITERAL : '\"' .* '\"'; and: tree grammar Evaluator; options { language = Java; tokenVocab = Kalkulator; ASTLabelType = CommonTree; } @header { package lab4; import java.util.Map; import java.util.HashMap; } @members { private Map<String, Object> zmienne = new HashMap<String, Object>(); } line returns [Object result] : (declaration | assignment { result = $assignment.result; })* EOF ; declaration : ^(type ( IDENT { if("string".equals($type.result)){ zmienne.put($IDENT.text,""); //add definition } else{ zmienne.put($IDENT.text,0); //add definition } System.out.println($type.result + " " + $IDENT.text);//write output } )* ) ; assignment returns [Object result] : ^('=' IDENT e=expression) { if(zmienne.containsKey($IDENT.text)) {zmienne.put($IDENT.text, e); result = e; System.out.println(e); } else{ System.out.println("Blad: Niezadeklarowana zmienna"); } } ; type returns [Object result] : 'int' {result="int";}| 'string' {result="string";} ; expression returns [Object result] : ^('+' op1=expression op2=expression) { result = (Integer)op1 + (Integer)op2; } | ^('-' op1=expression op2=expression) { result = (Integer)op1 - (Integer)op2; } | ^('*' op1=expression op2=expression) { result = (Integer)op1 * (Integer)op2; } | ^('/' op1=expression op2=expression) { result = (Integer)op1 / (Integer)op2; } | ^('%' op1=expression op2=expression) { result = (Integer)op1 \% (Integer)op2; } | ^('&' op1=expression op2=expression) { result = (String)op1 + (String)op2; } | ^(NEG e=expression) { result = -(Integer)e; } | IDENT { result = zmienne.get($IDENT.text); } | INTEGER { result = Integer.parseInt($INTEGER.text); } | STRING_LITERAL { String t=$STRING_LITERAL.text; result = t.substring(1,t.length()-1); } ; Can I make it process line-by-line or is that easier to make it all again?

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  • Line graph disappears after new line is added

    - by tonystinge
    I am having trouble uploading a large .csv file to my HIGHCHART graph. I've been able to graph an 85KB up to 1486 lines by 9 (I) columns. Here is an example: TimeStamp Temp_1_01 Temp_1_02 Temp_2_01 Temp_2_02 Temp_3_01 Temp_3_02 Temp_4_01 Temp_4_02 5/15/2014, 3:25 408 487 63 84 67 91 63 78 5/15/2014 3:30 408 487 63 84 67 91 63 78 5/15/2014 3:35 407 489 63 84 67 91 63 78 5/15/2014 3:40 408 488 63 84 67 91 63 78 5/15/2014 3:44 408 488 63 84 67 91 63 78 ... 5/22/2014 9:40 483 421 0 93 76 95 72 89 When I add a new line the line graph disappears. Any suggestions? Here is the javascript: $.get('Dropbox/geo/sites/GC_Room/loveland.csv', function(data) { // Split the lines var lines = data.split('\n'); var i = 0; var csvData = []; // Iterate over the lines and add categories or series $.each(lines, function(lineNo, line) { csvData[i] = line.split(','); i = i + 1; }); var columns = csvData[0]; var categories = [], series = []; for(var colIndex=0,len=columns.length; colIndex<len; colIndex++) { //first row data as series's name var seriesItem= { data:[], name:csvData[0][colIndex] }; for(var rowIndex=1,rowCnt=csvData.length; rowIndex<rowCnt; rowIndex++) { //first column data as categories, if (colIndex == 0) { categories.push(csvData[rowIndex][0]); } else if(parseFloat(csvData[rowIndex][colIndex])) // <-- here { seriesItem.data.push(parseFloat(csvData[rowIndex][colIndex])); } }; //except first column if(colIndex>0)series.push(seriesItem); } // Create the chart var chart = new Highcharts.Chart( { chart: { alignTick: false, renderTo: 'LANE_METALS', type: 'line' }, title: { text: 'Monthly Average Temperature', x: -20 //center }, subtitle: { text: 'Source: LANE METALS', x: -20 }, xAxis: { categories: categories, labels: { step: 200, text: 'Time', }, tickWidth: 0 }, yAxis: { title: { text: 'Temperature (\xB0C)' }, min: 0 }, tooltip: { formatter: function() { return '<b>'+ this.series.name +'</b><br/>'+ this.x +': '+ this.y +'\xB0C'; } }, legend: { layout: 'vertical', //backgroundColor: '#FFFFFF', //floating: true, align: 'left', //x: 100, verticalAlign: 'top', //y: 70, borderWidth: 0 }, plotOptions: { area: { turboThreshold: 0, stacking: 'normal', lineColor: '#666666', lineWidth: 1, marker: { lineWidth: 1, lineColor: '#666666' } } }, series: series }); });

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  • Regex: Use start of line/end of line signs (^ or $) in different context

    - by fgysin
    While doing some small regex task I came upon this problem. I have a string that is a list of tags that looks e.g like this: foo,bar,qux,garp,wobble,thud What I needed to do was to check if a certain tag, e.g. 'garp' was in this list. (What it finally matches is not really important, just if there is a match or not.) My first and a bit stupid try at this was to use the following regex: [^,]garp[,$] My idea was that before 'garp' there should either be the start of the line/string or a comma, after 'garp' there should be either a comma or the end of the line/string. Now, it is instantly obvious that this regex is wrong: Both ^ and $ change their behaviour in the context of the character class [ ]. What I finally came up with is the following: ^garp$|^garp,|,garp,|,garp$ This regex just handles the 4 cases one by one. (Tag at beginning of list, in the center, at the end, or as the only element of the list.) The last regex is somehow a bit ugly in my eyes and just for funs sake I'd like to make it a bit more elegant. Is there a way how the start of line/end of line characters (^ and $) can be used in the context of character classes?

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  • read line by line the text file for make map in xna

    - by Mohammadali Najjar khodabakhsh
    i want to read a text file for build map; for example I have this map 0@0000000 0@0000000 0@0000000 000000000 000000000 000000000 000000000 I know I should use this : StreamReader reader = new StreamReader(Application.StartupPath+@"/TestMap.MMAP"); string line = reader.ReadToEnd(); reader.Close(); now for example I want read line 2 char "@". how can i do this? please help me. solve : Thank you (L.B AND user861114) at last my problem solve like this : string[,] item = new string[9, 7]; string[] line = File.ReadAllLines(Application.StartupPath + @"/TestMap.MMAP"); for (int j = 0; j < 7; j++) { for (int i = 0; i < 9; i++) { item[i, j] = line[j].Substring(i, 1); Console.WriteLine(i + " " + j + "=" + item[i, j]); } } thanks alot.

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  • Java 1.5 Command Line Password Masking

    - by tathamr
    All, Our server is running Java 1.5 and I am having difficulty trying to mask user input from the command line. I am executing a jar file (java -jar my.jar) and am working through command line prompts via printlns. I cannot use Java Console. Thanks

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  • HTML Strict increases line height...

    - by Ryano
    Hi Why does XHTML 1.0 Strict display a line height as appearing larger than a line height of the same value in XHTML 1.0 Transitional? This therefore pushing down content within table cells (i.e Hotmail in Firefox, Gmail in IE and Firefox). Has anyone else experienced this issue and know a way around it? Cheers

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  • interactive lua: command line arguments

    - by mr calendar
    I wish to do lua prog.lua arg1 arg2 from the command line Inside prog.lua, I want to say, for instance print (arg1, arg2, '\n') Lua doesn't seem to have argv[1] etc and the methods I've seen for dealing with command line arguments seem to be immature and / or cumbersome. Am I missing something?

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  • How to escape parameter in windows command line?

    - by Rryk
    I need to run the following command from the command line in Windows 7: SumatraPDF.exe -inverse-search "\"C:\Program Files\eclipse\inverse_search.bat\" \"%f\" %l" However I need to modify it a little, since my installation of Eclipse is located in here: C:\Program Files (x86)\Eclipse (C++) How do I escape this line correctly? Do I need to escape parenthesis and pluses too? Or is it just enough to escape double quotes?

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  • Patterns for wrapping a command line tool in another language

    - by Tom Duckering
    I'm currently writing some Java to wrap around an extensive command line tool. It feels like I'm writing a lot of similar code. I'm wondering if there are any established patterns for wrapping command line tools - passing arguments and handling output and so on. Specific examples in Java would obviously be great, but any general suggestions or pointers are welcome too.

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  • Finding process count in Linux via command line

    - by Moev4
    I was looking for the best way to find the number of running processes with the same name via the command line in Linux. For example if I wanted to find the number of bash processes running and get "5". Currently I have a script that does a 'pidof ' and then does a count on the tokenized string. This works fine but I was wondering if there was a better way that can be done entirely via the command line. Thanks in advance for your help.

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  • Copying eclipse projects through command line?

    - by Richie
    Hi, Does anyone know if it is possible to copy an existing project into a new, created workspace on the fly? I can create the workspace already through command line. I am thinking I either need to copy the whole project into another workspace (possible through command line?) or create a new project and copy the .classpath and .project folders. Any help is appreciated. Thanks, Richie

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  • Modifying text files and executing programs with command line parameters in c# or c++ on Linux

    - by Robert Harvey
    I have a need to create a utility in Suze Linux. The utility will make modifications to some text files, and then use the information in those text files to program a device in the computer using a different executable which accepts command line parameters. I am fluent in c#, but have never worked with Linux. Should I take the time to learn Gnu C++ to do this, or install Mono? How would I execute the programming utility and pass it command line parameters?

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  • C/C++ line number

    - by Betamoo
    In the sake of debugging purposes, can I get the line number in C/C++ compilers? (standard way or specific ways for certain compilers) e.g if(!Logical) printf("Not logical value at line number %d \n",LineNumber); // How to get LineNumber without writing it by my hand?(dynamic compilation) Thanks

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  • Does deleting 'M'odified line in SVN Commit have an effect

    - by cdated
    When running the commandsvn ci you get a text editor that allows you to place a comment, below that is there is the text "--This line, and those below, will be ignored--", then the files modified, added, or deleted. If I were to delete a line such as: M folderA/fileA Would it remove that file from the check in, or is that just an SVN comment that has no other effect?

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  • Multi-line code in PHP interactive shell

    - by Andrei
    I'm learning to use the PHP interactive shell, but I'm having trouble with multi-line code. Using backslashes like in the UNIX shells doesn't seem to work. What am I doing wrong ? php > function test(){\ php { echo "test";\ php { }\ php > test(); PHP Parse error: syntax error, unexpected T_ECHO, expecting T_STRING in php shell code on line 2

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  • How to find the number of packages needing update from the command line?

    - by KayEss
    I'm working on some system admin automation using fabric and I'd like to be able to monitor the number of packages that need upgrading on a given machine. This is the same information that I can see when I first log in to a machine, i.e. this part: 35 packages can be updated. 22 updates are security updates. Is there a command that I can run (preferably without sudo) that gives just that information? I'd also like to know whether or not apg/dpkg thinks that the machine needs a reboot after packages are installed/upgraded. bybobu shows this at the bottom of the screen. That way I can decide whether or not to reboot machines after I update packages a bit more intelligently. I've looked at the apt-python bindings, but they seem to have a high learning curve and they also appear to be changed around a lot -- I'd like something that will work at least as far back as lucid without needing to do different things on different Ubuntu versions.

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