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  • How can I do batch image processing with ImageJ in Java or clojure?

    - by Robert McIntyre
    I want to use ImageJ to do some processing of several thousand images. Is there a way to take any general imageJ plugin and apply it to hundreds of images automatically? For example, say I want to take my thousand images and apply a polar transformation to each--- A polar transformation plugin for ImageJ can be found here: http://rsbweb.nih.gov/ij/plugins/polar-transformer.html Great! Let's use it. From: [http://albert.rierol.net/imagej_programming_tutorials.html#How%20to%20automate%20an%20ImageJ%20dialog] I find that I can apply a plugin using the following: (defn x-polar [imageP] (let [thread (Thread/currentThread) options ""] (.setName thread "Run$_polar-transform") (Macro/setOptions thread options) (IJ/runPlugIn imageP "Polar_Transformer" ""))) This is good because it suppresses the dialog which would otherwise pop up for every image. But running this always brings up a window containing the transformed image, when what I want is to simply return the transformed image. The stupidest way to do what I want is to just close the window that comes up and return the image which it was displaying. Does what I want but is absolutely retarded: (defn x-polar [imageP] (let [thread (Thread/currentThread) options ""] (.setName thread "Run$_polar-transform") (Macro/setOptions thread options) (IJ/runPlugIn imageP "Polar_Transformer" "") (let [return-image (IJ/getImage)] (.hide return-image) return-image))) I'm obviously missing something about how to use imageJ plugins in a programming context. Does anyone know the right way to do this? Thanks, --Robert McIntyre

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  • Extracting a string starting with x and ending with y

    - by DMan
    First of all, I did a search on this and was able to find how to use something like String.Split() to extract the string based on a condition. I wasn't able to find however, how to extract it based on an ending condition as well. For example, I have a file with links to images: http://i594.photobucket.com/albums/tt27/34/444.jpghttp://i594.photobucket.com/albums/as/asfd/ghjk6.jpg You will notice that all the images start with http:// and end with .jpg. However, .jpg is succeeded by http:// without a space, making this a little more difficult. So basically I'm trying to find a way (Regex?) to extract a string from a string that starts with http:// and ends with .jpg

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  • What's a good way of building up a String where you specific start and end locations?

    - by Michael Campbell
    (java 1.5) I have a need to build up a String, in pieces. I'm given a set of (sub)strings, each with a start and end point of where they belong in the final string. Was wondering if there were some canonical way of doing this. This isn't homework, and I can use any licensable OSS, such as jakarta commons-lang StringUtils etc. My company has a solution using a CharBuffer, and I'm content to leave it as is (and add some unit tests, of which there are none (?!)) but the code is fairly hideous and I would like something easier to read. As I said this isn't homework, and I don't need a complete solution, just some pointers to libraries or java classes that might give me some insight. The String.Format didn't seem QUITE right... I would have to honor inputs too long and too short, etc. Substrings would be overlaid in the order they appear (in case of overlap). As an example of input, I might have something like: String:start:end FO:0:3 (string shorter than field) BAR:4:5 (String larger than field) BLEH:5:9 (String overlays previous field) I'd want to end up with FO BBLEH 01234567890

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  • Can I use regular expressions with String.Replace in C#?

    - by Taz
    For example I have code below string txt="I have strings like West, and West; and west, and Western." I would like to replace the word west or West with some other word. But I would like not to replace West in Western. Can I use regular expression in string.replace? I used inputText.Replace("(\\sWest.\\s)",temp); It dos not work.

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  • How do I flip a column in mysql that has data structured: 'last name, first name'?

    - by ggg
    I want to create a new column in a MYSQL table that has Fn Ln instead of Ln, Fn. Most of my data is printed Fn Ln. Another idea is to incorporate a string function each time there is an output (php based) but that seems to waste resources. Finally, I couldn't find the syntax (loop or foreach) for my php function anyway. Here is the working php function that I got from a previous post: $name = "Lastname, Firstname"; $names = explode(", ", $name); $name = $names[1] . " " . $names[0];

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  • How to Split and strip into multiple variables?

    - by Khou
    How to Split and strip X string values into separate variables? X has string value of itemA=myvalue&itemB=anothervalue&itemC=andanother I have 3 strings (var1,var2,var3) to hold the values of the stripped values. Find in string X "itemA=" copy everything after "=" character until "&" character OR if no "&" character is found copy until end of string (store this value into var1) Find in string X "itemB=" copy everything after "=" character until "&" character OR if no "&" character is found copy until end of string (store this value into var2) Find in string X "itemB=" copy everything after "=" character until "&" character OR if no "&" character is found copy until end of string (store this value into var3)

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  • Iterating through String word at a time in Python

    - by AlgoMan
    I have a string buffer of a huge text file. I have to search a given words/phrases in the string buffer. Whats the efficient way to do it ? I tried using re module matches. But As i have a huge text corpus that i have to search through. This is taking large amount of time. Given a Dictionary of words and Phrases. I iterate through the each file, read that into string , search all the words and phrases in the dictionary and increment the count in the dictionary if the keys are found. One small optimization that we thought was to sort the dictionary of phrases/words with the max number of words to lowest. And then compare each word start position from the string buffer and compare the list of words. If one phrase is found, we don search for the other phrases (as it matched the longest phrase ,which is what we want) Can some one suggest how to go about word by word in the string buffer. (Iterate string buffer word by word) ? Also, Is there any other optimization that can be done on this ?

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  • how to retrieve part of a string in java?

    - by mithun1538
    Hello everyone, I am designing a chat applet. In this, a user will append his name to the beginning of the message that he sends to the other user. In the window of other user, I want to retrieve the appended user name from that string. How do I do that? The message sent by the user is as follows : final_msg = user_name + ": " + user_message Hence I want to know how to retrieve the user_name string only. Is there a function that can retrieve a substring upto the first ":"? I dont want to use final_msg.split(":"), because there is a possiblity that the user_message contains ":", which will then give me an array of strings.

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  • Tricky string transformation (hopefully) in LINQ

    - by Larsenal
    I'm hoping for a concise way to perform the following transformation. I want to transform song lyrics. The input will look something like this: Verse 1 lyrics line 1 Verse 1 lyrics line 2 Verse 1 lyrics line 3 Verse 1 lyrics line 4 Verse 2 lyrics line 1 Verse 2 lyrics line 2 Verse 2 lyrics line 3 Verse 2 lyrics line 4 And I want to transform them so the first line of each verse is grouped together as in: Verse 1 lyrics line 1 Verse 2 lyrics line 1 Verse 1 lyrics line 2 Verse 2 lyrics line 2 Verse 1 lyrics line 3 Verse 2 lyrics line 3 Verse 1 lyrics line 4 Verse 2 lyrics line 4 Lyrics will obviously be unknown, but the blank line marks a division between verses in the input.

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  • Regex to check that a character in range doesn't repeat

    - by Aly
    Hi, I want to match against Strings such as AhKs & AdKs (i.e. two cards Ah = Ace of Hearts). I want to match two off-suit cards with a regex, what I currently have is "^[AKQJT2-9][hscd]{2}$", but this could match hands such as AhKh (suited) and AhAh. Is there a way to possibly use backreferences to say the second [hscd] cannot be the same as the firs (similarly for [AKQJT2-9])

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  • C# string parsing question

    - by rsteckly
    I'm trying to split a string: string f = r.ReadToEnd(); string[] seperators = new string[] {"[==========]"}; string[] result; result = f.Split(seperators, StringSplitOptions.None); There's this ========== thing that separates entries. For the life of me, I can't get this to work. I've got a ruby version working...BUT using the string splitter classes I thought I knew for .NET doesn't seem to be working so well. Any ideas what I'm doing wrong?

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  • rotating bitmaps. In code.

    - by Marco van de Voort
    Is there a faster way to rotate a large bitmap by 90 or 270 degrees than simply doing a nested loop with inverted coordinates? The bitmaps are 8bpp and typically 2048*2400*8bpp Currently I do this by simply copying with argument inversion, roughly (pseudo code: for x = 0 to 2048-1 for y = 0 to 2048-1 dest[x][y]=src[y][x]; (In reality I do it with pointers, for a bit more speed, but that is roughly the same magnitude) GDI is quite slow with large images, and GPU load/store times for textures (GF7 cards) are in the same magnitude as the current CPU time. Any tips, pointers? An in-place algorithm would even be better, but speed is more important than being in-place. Target is Delphi, but it is more an algorithmic question. SSE(2) vectorization no problem, it is a big enough problem for me to code it in assembler Duplicates How do you rotate a two dimensional array?. Follow up to Nils' answer Image 2048x2700 - 2700x2048 Compiler Turbo Explorer 2006 with optimization on. Windows: Power scheme set to "Always on". (important!!!!) Machine: Core2 6600 (2.4 GHz) time with old routine: 32ms (step 1) time with stepsize 8 : 12ms time with stepsize 16 : 10ms time with stepsize 32+ : 9ms Meanwhile I also tested on a Athlon 64 X2 (5200+ iirc), and the speed up there was slightly more than a factor four (80 to 19 ms). The speed up is well worth it, thanks. Maybe that during the summer months I'll torture myself with a SSE(2) version. However I already thought about how to tackle that, and I think I'll run out of SSE2 registers for an straight implementation: for n:=0 to 7 do begin load r0, <source+n*rowsize> shift byte from r0 into r1 shift byte from r0 into r2 .. shift byte from r0 into r8 end; store r1, <target> store r2, <target+1*<rowsize> .. store r8, <target+7*<rowsize> So 8x8 needs 9 registers, but 32-bits SSE only has 8. Anyway that is something for the summer months :-) Note that the pointer thing is something that I do out of instinct, but it could be there is actually something to it, if your dimensions are not hardcoded, the compiler can't turn the mul into a shift. While muls an sich are cheap nowadays, they also generate more register pressure afaik. The code (validated by subtracting result from the "naieve" rotate1 implementation): const stepsize = 32; procedure rotatealign(Source: tbw8image; Target:tbw8image); var stepsx,stepsy,restx,resty : Integer; RowPitchSource, RowPitchTarget : Integer; pSource, pTarget,ps1,ps2 : pchar; x,y,i,j: integer; rpstep : integer; begin RowPitchSource := source.RowPitch; // bytes to jump to next line. Can be negative (includes alignment) RowPitchTarget := target.RowPitch; rpstep:=RowPitchTarget*stepsize; stepsx:=source.ImageWidth div stepsize; stepsy:=source.ImageHeight div stepsize; // check if mod 16=0 here for both dimensions, if so -> SSE2. for y := 0 to stepsy - 1 do begin psource:=source.GetImagePointer(0,y*stepsize); // gets pointer to pixel x,y ptarget:=Target.GetImagePointer(target.imagewidth-(y+1)*stepsize,0); for x := 0 to stepsx - 1 do begin for i := 0 to stepsize - 1 do begin ps1:=@psource[rowpitchsource*i]; // ( 0,i) ps2:=@ptarget[stepsize-1-i]; // (maxx-i,0); for j := 0 to stepsize - 1 do begin ps2[0]:=ps1[j]; inc(ps2,RowPitchTarget); end; end; inc(psource,stepsize); inc(ptarget,rpstep); end; end; // 3 more areas to do, with dimensions // - stepsy*stepsize * restx // right most column of restx width // - stepsx*stepsize * resty // bottom row with resty height // - restx*resty // bottom-right rectangle. restx:=source.ImageWidth mod stepsize; // typically zero because width is // typically 1024 or 2048 resty:=source.Imageheight mod stepsize; if restx>0 then begin // one loop less, since we know this fits in one line of "blocks" psource:=source.GetImagePointer(source.ImageWidth-restx,0); // gets pointer to pixel x,y ptarget:=Target.GetImagePointer(Target.imagewidth-stepsize,Target.imageheight-restx); for y := 0 to stepsy - 1 do begin for i := 0 to stepsize - 1 do begin ps1:=@psource[rowpitchsource*i]; // ( 0,i) ps2:=@ptarget[stepsize-1-i]; // (maxx-i,0); for j := 0 to restx - 1 do begin ps2[0]:=ps1[j]; inc(ps2,RowPitchTarget); end; end; inc(psource,stepsize*RowPitchSource); dec(ptarget,stepsize); end; end; if resty>0 then begin // one loop less, since we know this fits in one line of "blocks" psource:=source.GetImagePointer(0,source.ImageHeight-resty); // gets pointer to pixel x,y ptarget:=Target.GetImagePointer(0,0); for x := 0 to stepsx - 1 do begin for i := 0 to resty- 1 do begin ps1:=@psource[rowpitchsource*i]; // ( 0,i) ps2:=@ptarget[resty-1-i]; // (maxx-i,0); for j := 0 to stepsize - 1 do begin ps2[0]:=ps1[j]; inc(ps2,RowPitchTarget); end; end; inc(psource,stepsize); inc(ptarget,rpstep); end; end; if (resty>0) and (restx>0) then begin // another loop less, since only one block psource:=source.GetImagePointer(source.ImageWidth-restx,source.ImageHeight-resty); // gets pointer to pixel x,y ptarget:=Target.GetImagePointer(0,target.ImageHeight-restx); for i := 0 to resty- 1 do begin ps1:=@psource[rowpitchsource*i]; // ( 0,i) ps2:=@ptarget[resty-1-i]; // (maxx-i,0); for j := 0 to restx - 1 do begin ps2[0]:=ps1[j]; inc(ps2,RowPitchTarget); end; end; end; end;

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  • Java add leading zeros to a number....

    - by user69514
    I need to return a string in the form xxx-xxxx where xxx is a number and xxxx is another number, however when i have leading zeros they disappear. I'm trying number formatter, but it's not working. public String toString(){ NumberFormat nf3 = new DecimalFormat("#000"); NumberFormat nf4 = new DecimalFormat("#0000"); if( areaCode != 0) return nf3.format(areaCode) + "-" + nf3.format(exchangeCode) + "-" + nf4.format(number); else return exchangeCode + "-" + number; } } I figured it out: public String toString(){ NumberFormat nf3 = new DecimalFormat("000"); NumberFormat nf4 = new DecimalFormat("0000"); if( areaCode != 0) //myFormat.format(new Integer(someValue)); return nf3.format(new Integer(areaCode)) + "-" + nf3.format(new Integer(exchangeCode)) + "-" + nf4.format(new Integer(number)); else return nf3.format(new Integer(exchangeCode)) + "-" + nf4.format(new Integer(number)); }

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  • Obj-C combining strings

    - by Brodie4598
    this must be such a simple problem but can someone tell me why this doesnt work: visibilityString1 = @"the"; visibilityString2 = @"end"; visibilityString = (@"This is %@ %@", visibilityString1, visibilityString2); Every time I try to combine strings this way, it will only return the second string so what I get is: end

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  • Counting longest occurence of repeated sequence in Python

    - by user248237
    What's the easiest way to count the longest consecutive repeat of a certain character in a string? For example, the longest consecutive repeat of "b" in the following string: my_str = "abcdefgfaabbbffbbbbbbfgbb" would be 6, since other consecutive repeats are shorter (3 and 2, respectively.) How can I do this in Python? thanks.

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  • Need to format character precedence in Strings.

    - by Christian
    I'm currently writing a Roman Numeral Converter for the fun of it. The problem works up to the aforementioned character precedence. Since Roman Numerals are not positional, i.e. III does not symbolize 1*whatever base^2 + 1*whatever base^1 + 1*whatever base^0. That of course makes it hard when somebody types in XIV and I need to make sure that the I is not added in this case, but rather subtracted. I'm not sure how to do this. What would be the best approach to tackle this? I have both the Roman Symbols and their respective decimal numbers stored in arrays: const char cRomanArray[] = "IVXLCDM"; const int romanArray[] = { 1, 5, 10, 50, 100, 500, 1000 }; so it wouldn't be too hard for me to brute-force the damn thing by simply checking the precedence within the array, i.e. if the symbol is smaller than the next symbol, i.e. in the exampe 'XIV' if 'I' is smaller than 'V', in which case it would be because I have ordered them in the array, then I could make it subtract the value instead of add. But this seems like a very ugly solution. Are there perhaps any better ones? I was thinking something along the lines of Regular Expressions maybe( forgive me if that sounds like a horrible idea, I haven't used RegExp yet, but it sounds like it could do what I need, and that's to determine the characters in a string.)

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