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  • sudoer scheme for a web developer that retains future control of a server?

    - by Tchalvak
    Background I have a server that I'm looking to set up, and provide access to another web developer. I don't want to put many constraints on him, though I wouldn't mind isolating the site that he'll be developing from others on the server that I will develop. The problem Mainly what I want is to make sure that I retain control over the server in the future. I want to reserve the ability to create/promote/demote and other administrative functions that don't deal with web software. If I make him an admin, he can sudo su - and become root and remove root control from me, for example. What is a good setup for the sudoers file so that he can do things like: *install software (through apt-get) restart apache access mysql configure mysql/apache reboot edit web development configuration type files in /etc * And can't do things like: take away other admin permissions change the root password have control over other security/administrative functions Example sudoer files that accomplish something like that could be useful, I'm sure that people have needed to do this before.

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  • What is the best way to change the replication scheme of 2 currently replicated slaves?

    - by mmattax
    I have MySQL replication set up in production as follows: DB1 - DB2 DB1 - BAK Where DB2 and BAK are slaves to DB1. All 3 servers are in sync (0 seconds behind the master) and have 30+ GB of data. I'd like to put the servers in a new master-slave configuration as follows: DB1 - DB2 - BAK What is the best way to change the master host on BAK? Is there a way to avoid having to stop the slave thread on DB2 and getting a mysqldump for BAK (a 5-6 hour processes) ?

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  • sudoer scheme to allow useful access to another web developer yet retain future control of a virtual

    - by Tchalvak
    Background: Virtual Private Server I have a virtual private server that I'm looking to host multiple websites on, and provide access to another web developer. I don't care about putting too many constraints on him, though I wouldn't mind isolating the site that he'll be developing from other sites on the server that I will develop. The problem: retain control Mainly what I want is to make sure that I retain control over the server in the future. I want to reserve the ability to create/promote/demote and other administrative functions that don't deal with web software. If I make him an admin, he can sudo su - and become root and remove root control from me, for example. I need him not to be able to: take away other admin permissions change the root password have control over other security/administrative functions I would like him to still be able to: install software (through apt-get) restart apache access mysql configure mysql/apache reboot edit web development configuration type files in /etc/ Other Standard Setups would be happily considered I've never really set up a good sudoers file, so simple example setups would be very useful, even if they're only somewhat similar to the settings that I'm hoping for above. Edit: I have not yet finalized permissions, so standard, useful sudo setups are certainly an option, the lists above are more what I'm hoping I can do, I don't know that that setup can be done. I'm sure that people have solved this type of problem before somehow, though, and I'd like to go with something somewhat tested as opposed to something I've homegrown.

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  • Windows 8.1 wants to format a USB stick with an unusual but valid GPT partitioning scheme, why?

    - by DonGar
    I have a USB stick formatted with GPT partitions. Some of the partitions are ext2, some are ext4, some are custom and funky. However, there is also a standard EFI partition, and a standard vfat partition. In Windows 7, both the EFI partition and the standard VFAT partition are visible and mount normally. But Windows 8.1 prompts to reformat the drive when it's inserted. I'm not surprised if Win 8 hides the EFI partition, but I didn't expect it to prompt for reformatting. I want to leave existing partitions alone, but have a VFAT partition that Windows 7, 8, and 8.1 will mount and display normally. Exactly how does Win 8 decide if a device needs to be formatted?

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  • matplotlib and python multithread file processing

    - by Napseis
    I have a large number of files to process. I have written a script that get, sort and plot the datas I want. So far, so good. I have tested it and it gives the desired result. Then I wanted to do this using multithreading. I have looked into the doc and examples on the internet, and using one thread in my program works fine. But when I use more, at some point I get random matplotlib error, and I suspect some conflict there, even though I use a function with names for the plots, and iI can't see where the problem could be. Here is the whole script should you need more comment, i'll add them. Thank you. #!/usr/bin/python import matplotlib matplotlib.use('GTKAgg') import numpy as np from scipy.interpolate import griddata import matplotlib.pyplot as plt import matplotlib.colors as mcl from matplotlib import rc #for latex import time as tm import sys import threading import Queue #queue in 3.2 and Queue in 2.7 ! import pdb #the debugger rc('text', usetex=True)#for latex map=0 #initialize the map index. It will be use to index the array like this: array[map,[x,y]] time=np.zeros(1) #an array to store the time middle_h=np.zeros((0,3)) #x phi c #for the middle of the box current_file=open("single_void_cyl_periodic_phi_c_middle_h_out",'r') for line in current_file: if line.startswith('# === time'): map+=1 np.append(time,[float(line.strip('# === time '))]) elif line.startswith('#'): pass else: v=np.fromstring(line,dtype=float,sep=' ') middle_h=np.vstack( (middle_h,v[[1,3,4]]) ) current_file.close() middle_h=middle_h.reshape((map,-1,3)) #3d array: map, x, phi,c ##### def load_and_plot(): #will load a map file, and plot it along with the corresponding profile loaded before while not exit_flag: print("fecthing work ...") #try: if not tasks_queue.empty(): map_index=tasks_queue.get() print("----> working on map: %s" %map_index) x,y,zp=np.loadtxt("single_void_cyl_growth_periodic_post_map_"+str(map_index),unpack=True, usecols=[1, 2,3]) for i,el in enumerate(zp): if el<0.: zp[i]=0. xv=np.unique(x) yv=np.unique(y) X,Y= np.meshgrid(xv,yv) Z = griddata((x, y), zp, (X, Y),method='nearest') figure=plt.figure(num=map_index,figsize=(14, 8)) ax1=plt.subplot2grid((2,2),(0,0)) ax1.plot(middle_h[map_index,:,0],middle_h[map_index,:,1],'*b') ax1.grid(True) ax1.axis([-15, 15, 0, 1]) ax1.set_title('Profiles') ax1.set_ylabel(r'$\phi$') ax1.set_xlabel('x') ax2=plt.subplot2grid((2,2),(1,0)) ax2.plot(middle_h[map_index,:,0],middle_h[map_index,:,2],'*r') ax2.grid(True) ax2.axis([-15, 15, 0, 1]) ax2.set_ylabel('c') ax2.set_xlabel('x') ax3=plt.subplot2grid((2,2),(0,1),rowspan=2,aspect='equal') sub_contour=ax3.contourf(X,Y,Z,np.linspace(0,1,11),vmin=0.) figure.colorbar(sub_contour,ax=ax3) figure.savefig('single_void_cyl_'+str(map_index)+'.png') plt.close(map_index) tasks_queue.task_done() else: print("nothing left to do, other threads finishing,sleeping 2 seconds...") tm.sleep(2) # except: # print("failed this time: %s" %map_index+". Sleeping 2 seconds") # tm.sleep(2) ##### exit_flag=0 nb_threads=2 tasks_queue=Queue.Queue() threads_list=[] jobs=list(range(map)) #each job is composed of a map print("inserting jobs in the queue...") for job in jobs: tasks_queue.put(job) print("done") #launch the threads for i in range(nb_threads): working_bee=threading.Thread(target=load_and_plot) working_bee.daemon=True print("starting thread "+str(i)+' ...') threads_list.append(working_bee) working_bee.start() #wait for all tasks to be treated tasks_queue.join() #flip the flag, so the threads know it's time to stop exit_flag=1 for t in threads_list: print("waiting for threads %s to stop..."%t) t.join() print("all threads stopped")

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  • How to force grails GORM to respect DB scheme ?

    - by fabien-barbier
    I have two domains : class CodeSet { String id String owner String comments String geneRLF String systemAPF static hasMany = [cartridges:Cartridge] static constraints = { id(unique:true,blank:false) } static mapping = { table 'code_set' version false columns { id column:'code_set_id', generator: 'assigned' owner column:'owner' comments column:'comments' geneRLF column:'gene_rlf' systemAPF column:'system_apf' } } and : class Cartridge { String id String code_set_id Date runDate static belongsTo = CodeSet static constraints = { id(unique:true,blank:false) } static mapping = { table 'cartridge' version false columns { id column:'cartridge_id', generator: 'assigned' code_set_id column:'code_set_id' runDate column:'run_date' } } Actually, with those models, I get tables : - code_set, - cartridge, - and table : code_set_cartridge (two fields : code_set_cartridges_id, cartridge_id) I would like to not have code_set_cartridge table, but keep relationship : code_set -- 1:n -- cartridge In other words, how can I keep association between code_set and cartridge without intermediate table ? (using code_set_id as primary key in code_set and code_set_id as foreign key in cartridge). Mapping with GORM can be done without intermediate table?

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  • Can a MAC address be used as a reliable part of a rights management (DRM) scheme?

    - by Jarrod Mosen
    We're currently writing some software that we want to protect. We thought that registering a user's MAC address in a database upon activation of the software seemed viable; we can profile and grab that with a Java applet, (is there a better way?) so getting it isn't too much of a problem. However, we want their computer to only run the application, and download application files/updates from the server when their MAC address has been verified with their one on-file. We understand that this means a lockdown to one computer, but special changes can be made on request. What would be the best way to verify their MAC address, to see if it exists in the database, and then serve them the files to run the application? (And to simply run it on subsequent requests, to prevent re-downloading.)

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  • WNA Configuration in OAM 11g

    - by P Patra
    Pre-Requisite: Kerberos authentication scheme has to exist. This is usually pre-configured OAM authentication scheme. It should have Authentication Level - "2", Challenge Method - "WNA", Challenge Direct URL - "/oam/server" and Authentication Module- "Kerberos". The default authentication scheme name is "KerberosScheme", this name can be changed. The DNS name has to be resolvable on the OAM Server. The DNS name with referrals to AD have to be resolvable on OAM Server. Ensure nslookup work for the referrals. Pre-Install: AD team to produce keytab file on the AD server by running ktpass command. Provide OAM Hostname to AD Team. Receive from AD team the following: Keypass file produced when running the ktpass command ktpass username ktpass password Copy the keytab file to convenient location in OAM install tree and rename the file if desired. For instance where oam-policy.xml file resides. i.e. /fa_gai2_d/idm/admin/domains/idm-admin/IDMDomain/config/fmwconfig/keytab.kt Configure WNA Authentication on OAM Server: Create config file krb.config and set the environment variable to the path to this file: KRB_CONFIG=/fa_gai2_d/idm/admin/domains/idm-admin/IDMDomain/config/fmwconfig/krb.conf The variable KRB_CONFIG has to be set in the profile for the user that OAM java container(i.e. Wbelogic Server) runs as, so that this setting is available to the OAM server. i.e. "applmgr" user. In the krb.conf file specify: [libdefaults] default_realm= NOA.ABC.COM dns_lookup_realm= true dns_lookup_kdc= true ticket_lifetime= 24h forwardable= yes [realms] NOA.ABC.COM={ kdc=hub21.noa.abc.com:88 admin_server=hub21.noa.abc.com:749 default_domain=NOA.ABC.COM [domain_realm] .abc.com=ABC.COM abc.com=ABC.COM .noa.abc.com=NOA.ABC.COM noa.abc.com=NOA.ABC.COM Where hub21.noa.abc.com is load balanced DNS VIP name for AD Server and NOA.ABC.COM is the name of the domain. Create authentication policy to WNA protect the resource( i.e. EBSR12) and choose the "KerberosScheme" as authentication scheme. Login to OAM Console => Policy Configuration Tab => Browse Tab => Shared Components => Application Domains => IAM Suite => Authentication Policies => Create Name: ABC WNA Auth Policy Authentication Scheme: KerberosScheme Failure URL: http://hcm.noa.abc.com/cgi-bin/welcome Edit System Configuration for Kerberos System Configuration Tab => Access Manager Settings => expand Authentication Modules => expand Kerberos Authentication Module => double click on Kerberos Edit "Key Tab File" textbox - put in /fa_gai2_d/idm/admin/domains/idm-admin/IDMDomain/config/fmwconfig/keytab.kt Edit "Principal" textbox - put in HTTP/[email protected] Edit "KRB Config File" textbox - put in /fa-gai2_d/idm/admin/domains/idm-admin/IDMDomain/config/fmwconfig/krb.conf Cilck "Apply" In the script setting environment for the WLS server where OAM is deployed set the variable: KRB_CONFIG=/fa_gai2_d/idm/admin/domains/idm-admin/IDMDomain/config/fmwconfig/krb.conf Re-start OAM server and OAM Server Container( Weblogic Server)

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  • How to draw line inside a scatter plot

    - by ruffy
    I can't believe that this is so complicated but I tried and googled for a while now. I just want to analyse my scatter plot with a few graphical features. For starters, I want to add simply a line. So, I have a few (4) points and like in this plot [1] I want to add a line to it. http://en.wikipedia.org/wiki/File:ROC_space-2.png [1] Now, this won't work. And frankly, the documentation-examples-gallery combo and content of matplotlib is a bad source for information. My code is based upon a simple scatter plot from the gallery: # definitions for the axes left, width = 0.1, 0.85 #0.65 bottom, height = 0.1, 0.85 #0.65 bottom_h = left_h = left+width+0.02 rect_scatter = [left, bottom, width, height] # start with a rectangular Figure fig = plt.figure(1, figsize=(8,8)) axScatter = plt.axes(rect_scatter) # the scatter plot: p1 = axScatter.scatter(x[0], y[0], c='blue', s = 70) p2 = axScatter.scatter(x[1], y[1], c='green', s = 70) p3 = axScatter.scatter(x[2], y[2], c='red', s = 70) p4 = axScatter.scatter(x[3], y[3], c='yellow', s = 70) p5 = axScatter.plot([1,2,3], "r--") plt.legend([p1, p2, p3, p4, p5], [names[0], names[1], names[2], names[3], "Random guess"], loc = 2) # now determine nice limits by hand: binwidth = 0.25 xymax = np.max( [np.max(np.fabs(x)), np.max(np.fabs(y))] ) lim = ( int(xymax/binwidth) + 1) * binwidth axScatter.set_xlim( (-lim, lim) ) axScatter.set_ylim( (-lim, lim) ) xText = axScatter.set_xlabel('FPR / Specificity') yText = axScatter.set_ylabel('TPR / Sensitivity') bins = np.arange(-lim, lim + binwidth, binwidth) plt.show() Everything works, except the p5 which is a line. Now how is this supposed to work? What's good practice here?

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  • Can't connect to svnserve on localhost - connection actively refused

    - by RMorrisey
    When I try to connect using Tortoise to my SVN server using: svn://localhost/ Tortoise tells me: "Can't connect to host 'localhost'. No connection could be made because the target machine actively refused it." How can I fix this? I am trying to set up a subversion server on my local PC for personal use. I am running Windows Vista, with SlikSVN and TortoiseSVN installed. I previously had everything working correctly, but I found that I couldn't merge(!), apparently due to a version mismatch between the SVN client and server. Anyway... I now have the following setup: I created a repository using svnadmin create; it resides at C:\svnGrove C:\svnGrove\conf\svnserve.conf (# comments omitted): [general] anon-access=read auth-access=write password-db=passwd #authz-db=authz realm=svnGrove C:\svnGrove\conf\passwd: [users] myname=mypass My Subversion Server service is pointed to: C:\Program Files\SlikSvn\bin\svnserve.exe --service -r C:\svnGrove It shows the TCP/IP service as a dependency. I have also tried running svnserve from the command line, with similar results. The below is provided by the 'about' option in TortoiseSVN: TortoiseSVN 1.6.10, Build 19898 - 32 Bit , 2010/07/16 15:46:08 Subversion 1.6.12, apr 1.3.8 apr-utils 1.3.9 neon 0.29.3 OpenSSL 0.9.8o 01 Jun 2010 zlib 1.2.3 The following is from svn --version on the command line (not sure why it says CollabNet, CollabNet was the previous SVN binary that I had set up. The uninstaller failed to remove everything gracefully): svn, version 1.6.12 (SlikSvn/1.6.12) WIN32 compiled Jun 22 2010, 20:45:29 Copyright (C) 2000-2009 CollabNet. Subversion is open source software, see http://subversion.tigris.org/ This product includes software developed by CollabNet (http://www.Collab.Net/). The following repository access (RA) modules are available: * ra_neon : Module for accessing a repository via WebDAV protocol using Neon. - handles 'http' scheme - handles 'https' scheme * ra_svn : Module for accessing a repository using the svn network protocol. - with Cyrus SASL authentication - handles 'svn' scheme * ra_local : Module for accessing a repository on local disk. - handles 'file' scheme * ra_serf : Module for accessing a repository via WebDAV protocol using serf. - handles 'http' scheme - handles 'https' scheme I disabled my Windows Firewall and CA Internet Security, without success in resolving the issue. Edit The old version of svnserve was still set up as a service after the uninstall, pointed to this path: C:\Program Files\Subversion\svn-win32-1.4.6\bin I edited the registry key for the service to point to the new path (shown above). Whether I run svnserve as a service, or using -d, I do not see an entry for that port number in the listing generated by netstat -anp tcp.

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  • How to change password schema for Dovecot user authentication for an already existing mail server

    - by deb_lrnr
    Hello, I have an email server setup on Debian Lenny with Postfix, Dovecot, SASL and MySQL. Currently, the password scheme in my dovecot-sql.conf file is set to: CRYPT default_pass_scheme = CRYPT I would like to globally change the scheme to something stronger like SSHA, or MD5-CRYPT and re-hash all passwords with SSHA. What is the best way to do this? The Dovecot wiki mentions how passwords that don't follow the default scheme defined in dovecot-sql.conf can be prefixed with "{ssha}password", but I couldn't see anything regarding changing an already-existing scheme to a new one for all passwords that are already in the database. Thanks for your help!

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  • How do I get an application to appear as a choice in update-alternatives?

    - by Jay
    I separately installed the Firefox Beta and Alpha channels, and have desktop configuration files pointing to them in ~/.local/share/applications. However, stable Firefox is being used as my default browser by the system. (Firefox Beta used to be used until I messed with the "Default Applications" in System Settings, where it is not listed.) I tried running sudo update-alternatives --config x-www-browser to manually change it, but it's only recognizing Chromium and Firefox (stable) and showing them as a choice. What can I do to get custom desktop configuration files in ~/.local/share/applications to be seen as default alternatives? I think I may have to fiddle with the desktop config files, or with mimeinfo.cache or mimeapps.list? Running Oneiric. Here is the content of the firefox-beta.desktop file I created: [Desktop Entry] Name=Firefox Beta Exec=firefox-beta -P Beta -no-remote Icon=firefox Terminal=false X-MultipleArgs=false Type=Application StartupNotify=true StartupWMClass=Firefox Categories=GNOME;GTK;Network;WebBrowser; Comment[en_US]=Firefox Beta Channel MimeType=text/html;text/xml;application/xhtml+xml;application/xml;application/vnd.mozilla.xul+xml;application/rss+xml;application/rdf+xml;image/gif;image/jpeg;image/png;x-scheme-handler/http;x-scheme-handler/https;x-scheme-handler/ftp;x-scheme-handler/chrome;video/webm; Name[en_US]=Firefox Beta [NewWindow Shortcut Group] Name=Open a New Window Exec=firefox-beta -new-window about:blank TargetEnvironment=Unity

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  • ASP.NET WebAPI Security 3: Extensible Authentication Framework

    - by Your DisplayName here!
    In my last post, I described the identity architecture of ASP.NET Web API. The short version was, that Web API (beta 1) does not really have an authentication system on its own, but inherits the client security context from its host. This is fine in many situations (e.g. AJAX style callbacks with an already established logon session). But there are many cases where you don’t use the containing web application for authentication, but need to do it yourself. Examples of that would be token based authentication and clients that don’t run in the context of the web application (e.g. desktop clients / mobile). Since Web API provides a nice extensibility model, it is easy to implement whatever security framework you want on top of it. My design goals were: Easy to use. Extensible. Claims-based. ..and of course, this should always behave the same, regardless of the hosting environment. In the rest of the post I am outlining some of the bits and pieces, So you know what you are dealing with, in case you want to try the code. At the very heart… is a so called message handler. This is a Web API extensibility point that gets to see (and modify if needed) all incoming and outgoing requests. Handlers run after the conversion from host to Web API, which means that handler code deals with HttpRequestMessage and HttpResponseMessage. See Pedro’s post for more information on the processing pipeline. This handler requires a configuration object for initialization. Currently this is very simple, it contains: Settings for the various authentication and credential types Settings for claims transformation Ability to block identity inheritance from host The most important part here is the credential type support, but I will come back to that later. The logic of the message handler is simple: Look at the incoming request. If the request contains an authorization header, try to authenticate the client. If this is successful, create a claims principal and populate the usual places. If not, return a 401 status code and set the Www-Authenticate header. Look at outgoing response, if the status code is 401, set the Www-Authenticate header. Credential type support Under the covers I use the WIF security token handler infrastructure to validate credentials and to turn security tokens into claims. The idea is simple: an authorization header consists of two pieces: the schema and the actual “token”. My configuration object allows to associate a security token handler with a scheme. This way you only need to implement support for a specific credential type, and map that to the incoming scheme value. The current version supports HTTP Basic Authentication as well as SAML and SWT tokens. (I needed to do some surgery on the standard security token handlers, since WIF does not directly support string-ified tokens. The next version of .NET will fix that, and the code should become simpler then). You can e.g. use this code to hook up a username/password handler to the Basic scheme (the default scheme name for Basic Authentication). config.Handler.AddBasicAuthenticationHandler( (username, password) => username == password); You simply have to provide a password validation function which could of course point back to your existing password library or e.g. membership. The following code maps a token handler for Simple Web Tokens (SWT) to the Bearer scheme (the currently favoured scheme name for OAuth2). You simply have to specify the issuer name, realm and shared signature key: config.Handler.AddSimpleWebTokenHandler(     "Bearer",     http://identity.thinktecture.com/trust,     Constants.Realm,     "Dc9Mpi3jaaaUpBQpa/4R7XtUsa3D/ALSjTVvK8IUZbg="); For certain integration scenarios it is very useful if your Web API can consume SAML tokens. This is also easily accomplishable. The following code uses the standard WIF API to configure the usual SAMLisms like issuer, audience, service certificate and certificate validation. Both SAML 1.1 and 2.0 are supported. var registry = new ConfigurationBasedIssuerNameRegistry(); registry.AddTrustedIssuer( "d1 c5 b1 25 97 d0 36 94 65 1c e2 64 fe 48 06 01 35 f7 bd db", "ADFS"); var adfsConfig = new SecurityTokenHandlerConfiguration(); adfsConfig.AudienceRestriction.AllowedAudienceUris.Add( new Uri(Constants.Realm)); adfsConfig.IssuerNameRegistry = registry; adfsConfig.CertificateValidator = X509CertificateValidator.None; // token decryption (read from configuration section) adfsConfig.ServiceTokenResolver = FederatedAuthentication.ServiceConfiguration.CreateAggregateTokenResolver(); config.Handler.AddSaml11SecurityTokenHandler("SAML", adfsConfig); Claims Transformation After successful authentication, if configured, the standard WIF ClaimsAuthenticationManager is called to run claims transformation and validation logic. This stage is used to transform the “technical” claims from the security token into application claims. You can either have a separate transformation logic, or share on e.g. with the containing web application. That’s just a matter of configuration. Adding the authentication handler to a Web API application In the spirit of Web API this is done in code, e.g. global.asax for web hosting: protected void Application_Start() {     AreaRegistration.RegisterAllAreas();     ConfigureApis(GlobalConfiguration.Configuration);     RegisterGlobalFilters(GlobalFilters.Filters);     RegisterRoutes(RouteTable.Routes);     BundleTable.Bundles.RegisterTemplateBundles(); } private void ConfigureApis(HttpConfiguration configuration) {     configuration.MessageHandlers.Add( new AuthenticationHandler(ConfigureAuthentication())); } private AuthenticationConfiguration ConfigureAuthentication() {     var config = new AuthenticationConfiguration     {         // sample claims transformation for consultants sample, comment out to see raw claims         ClaimsAuthenticationManager = new ApiClaimsTransformer(),         // value of the www-authenticate header, // if not set, the first scheme added to the handler collection is used         DefaultAuthenticationScheme = "Basic"     };     // add token handlers - see above     return config; } You can find the full source code and some samples here. In the next post I will describe some of the samples in the download, and then move on to authorization. HTH

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  • Python Least-Squares Natural Splines

    - by Eldila
    I am trying to find a numerical package which will fit a natural which minimizes weighted least squares. There is a package in scipy which does what I want for unnatural splines. import numpy as np import matplotlib.pyplot as plt from scipy import interpolate import random x = np.arange(0,5,1.0/2) xs = np.arange(0,5,1.0/500) y = np.sin(x+1) for i in range(len(y)): y[i] += .2*random.random() - .1 knots = np.array([1,2,3,4]) tck = interpolate.splrep(x,y,s=1,k=3,t=knots,task=-1) ynew = interpolate.splev(xs,tck,der=0) plt.figure() plt.plot(xs,ynew,x,y,'x')

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  • Confusion Matrix with number of classified/misclassified instances on it (Python/Matplotlib)

    - by Pinkie
    I am plotting a confusion matrix with matplotlib with the following code: from numpy import * import matplotlib.pyplot as plt from pylab import * conf_arr = [[33,2,0,0,0,0,0,0,0,1,3], [3,31,0,0,0,0,0,0,0,0,0], [0,4,41,0,0,0,0,0,0,0,1], [0,1,0,30,0,6,0,0,0,0,1], [0,0,0,0,38,10,0,0,0,0,0], [0,0,0,3,1,39,0,0,0,0,4], [0,2,2,0,4,1,31,0,0,0,2], [0,1,0,0,0,0,0,36,0,2,0], [0,0,0,0,0,0,1,5,37,5,1], [3,0,0,0,0,0,0,0,0,39,0], [0,0,0,0,0,0,0,0,0,0,38] ] norm_conf = [] for i in conf_arr: a = 0 tmp_arr = [] a = sum(i,0) for j in i: tmp_arr.append(float(j)/float(a)) norm_conf.append(tmp_arr) plt.clf() fig = plt.figure() ax = fig.add_subplot(111) res = ax.imshow(array(norm_conf), cmap=cm.jet, interpolation='nearest') cb = fig.colorbar(res) savefig("confmat.png", format="png") But I want to the confusion matrix to show the numbers on it like this graphic (the right one): http://i48.tinypic.com/2e30kup.jpg How can I plot the conf_arr on the graphic?

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  • Plot smooth line with PyPlot

    - by Paul
    I've got the following simple script that plots a graph: import matplotlib.pyplot as plt import numpy as np T = np.array([6, 7, 8, 9, 10, 11, 12]) power = np.array([1.53E+03, 5.92E+02, 2.04E+02, 7.24E+01, 2.72E+01, 1.10E+01, 4.70E+00]) plt.plot(T,power) plt.show() As it is now, the line goes straight from point to point which looks ok, but could be better in my opinion. What I want is to smooth the line between the points. In Gnuplot I would have plotted with smooth cplines. Is there an easy way to do this in PyPlot? I've found some tutorials, but they all seem rather complex.

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  • matplotlib.pyplot, preserve aspect ratio of the plot

    - by Headcrab
    Assuming we have a polygon coordinates as polygon = [(x1, y1), (x2, y2), ...], the following code displays the polygon: import matplotlib.pyplot as plt plt.fill(*zip(*polygon)) plt.show() By default it is trying to adjust the aspect ratio so that the polygon (or whatever other diagram) fits inside the window, and automatically changing it so that it fits even after resizing. Which is great in many cases, except when you are trying to estimate visually if the image is distorted. How to fix the aspect ratio to be strictly 1:1? (Not sure if "aspect ratio" is the right term here, so in case it is not - I need both X and Y axes to have 1:1 scale, so that (0, 1) on both X and Y takes an exact same amount of screen space. And I need to keep it 1:1 no matter how I resize the window.)

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  • Plotting 3D Polygons in python-matplotlib

    - by Developer
    I was unsuccessful browsing web for a solution for the following simple question: How to draw 3D polygon (say a filled rectangle or triangle) using vertices values? I have tried many ideas but all failed, see: from mpl_toolkits.mplot3d import Axes3D from matplotlib.collections import PolyCollection import matplotlib.pyplot as plt fig = plt.figure() ax = Axes3D(fig) x = [0,1,1,0] y = [0,0,1,1] z = [0,1,0,1] verts = [zip(x, y,z)] ax.add_collection3d(PolyCollection(verts),zs=z) plt.show() I appreciate in advance any idea/comment. Updates based on the accepted answer: import mpl_toolkits.mplot3d as a3 import matplotlib.colors as colors import pylab as pl import scipy as sp ax = a3.Axes3D(pl.figure()) for i in range(10000): vtx = sp.rand(3,3) tri = a3.art3d.Poly3DCollection([vtx]) tri.set_color(colors.rgb2hex(sp.rand(3))) tri.set_edgecolor('k') ax.add_collection3d(tri) pl.show() Here is the result:

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  • Python. Draw rectangle in basemap

    - by user2928318
    I need to add several rectangles in my basemap. I nee four rectangles with lat and log ranges as below. 1) llcrnrlon=-10, urcrnrlon=10, llcrnrlat=35,urcrnrlat=60 2) llcrnrlon=10.5, urcrnrlon=35, llcrnrlat=35,urcrnrlat=60 3) llcrnrlon=35.5, urcrnrlon=52, llcrnrlat=30,urcrnrlat=55 4) llcrnrlon=-20, urcrnrlon=35, llcrnrlat=20,urcrnrlat=34.5 My script is below. I found "polygon" packages to add lines but I do not exactly know how to do. Please help me!! Thanks a lot for your help in advance! from mpl_toolkits.basemap import Basemap m=basemaputpart.Basemap(llcrnrlon=-60, llcrnrlat=20, urcrnrlon=60, urcrnrlat=70, resolution='i', projection='cyl', lon_0=0, lat_0=45) lon1=np.array([[-180.+j*0.5 for j in range(721)] for i in range(181)]) lat1=np.array([[i*0.5 for j in range(721)] for i in range(181) ]) Nx1,Ny1=m(lon1,lat1,inverse=False) toplot=data[:,:] toplot[data==0]=np.nan toplot=np.ma.masked_invalid(toplot) plt.pcolor(Nx1,Ny1,np.log(toplot),vmin=0, vmax=5) cbar=plt.colorbar() m.drawcoastlines(zorder=2) m.drawcountries(zorder=2) plt.show()

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  • How to propagate http response code from back-end to client

    - by Manoj Neelapu
    Oracle service bus can be used as for pass through casses. Some use cases require propagating the http-response code back to the caller. http://forums.oracle.com/forums/thread.jspa?messageID=4326052&#4326052 is one such example we will try to accomplish in this tutorial.We will try to demonstrate this feature using Oracle Service Bus (11.1.1.3.0. We will also use commons-logging-1.1.1, httpcomponents-client-4.0.1, httpcomponents-core-4.0.1 for writing the client to demonstrate.First we create a simple JSP which will always set response code to 304.The JSP snippet will look like <%@ page language="java"     contentType="text/xml;     charset=UTF-8"        pageEncoding="UTF-8" %><%      System.out.println("Servlet setting Responsecode=304");    response.setStatus(304);    response.flushBuffer();%>We will now deploy this JSP on weblogic server with URI=http://localhost:7021/reponsecode/For this JSP we will create a simple Any XML BS We will also create proxy service as shown below Once the proxy is created we configure pipeline for the proxy to use route node, which invokes the BS(JSPCaller) created in the first place. So now we will create a error handler for route node and will add a stage. When a HTTP BS sends a request, the JSP sends the response back. If the response code is not 200, then the http BS will consider that as error and the above configured error handler is invoked. We will print $outbound to show the response code sent by the JSP. The next actions. To test this I had create a simple clientimport org.apache.http.Header;import org.apache.http.HttpEntity;import org.apache.http.HttpHost;import org.apache.http.HttpResponse;import org.apache.http.HttpVersion;import org.apache.http.client.methods.HttpGet;import org.apache.http.conn.ClientConnectionManager;import org.apache.http.conn.scheme.PlainSocketFactory;import org.apache.http.conn.scheme.Scheme;import org.apache.http.conn.scheme.SchemeRegistry;import org.apache.http.impl.client.DefaultHttpClient;import org.apache.http.impl.conn.tsccm.ThreadSafeClientConnManager;import org.apache.http.params.BasicHttpParams;import org.apache.http.params.HttpParams;import org.apache.http.params.HttpProtocolParams;import org.apache.http.util.EntityUtils;/** * @author MNEELAPU * */public class TestProxy304{    public static void main(String arg[]) throws Exception{     HttpHost target = new HttpHost("localhost", 7021, "http");     // general setup     SchemeRegistry supportedSchemes = new SchemeRegistry();     // Register the "http" protocol scheme, it is required     // by the default operator to look up socket factories.     supportedSchemes.register(new Scheme("http",              PlainSocketFactory.getSocketFactory(), 7021));     // prepare parameters     HttpParams params = new BasicHttpParams();     HttpProtocolParams.setVersion(params, HttpVersion.HTTP_1_1);     HttpProtocolParams.setContentCharset(params, "UTF-8");     HttpProtocolParams.setUseExpectContinue(params, true);     ClientConnectionManager connMgr = new ThreadSafeClientConnManager(params,              supportedSchemes);     DefaultHttpClient httpclient = new DefaultHttpClient(connMgr, params);     HttpGet req = new HttpGet("/HttpResponseCode/ProxyExposed");     System.out.println("executing request to " + target);     HttpResponse rsp = httpclient.execute(target, req);     HttpEntity entity = rsp.getEntity();     System.out.println("----------------------------------------");     System.out.println(rsp.getStatusLine());     Header[] headers = rsp.getAllHeaders();     for (int i = 0; i < headers.length; i++) {         System.out.println(headers[i]);     }     System.out.println("----------------------------------------");     if (entity != null) {         System.out.println(EntityUtils.toString(entity));     }     // When HttpClient instance is no longer needed,      // shut down the connection manager to ensure     // immediate deallocation of all system resources     httpclient.getConnectionManager().shutdown();     }}On compiling and executing this we see the below output in STDOUT which clearly indicates the response code was propagated from Business Service to Proxy serviceexecuting request to http://localhost:7021----------------------------------------HTTP/1.1 304 Not ModifiedDate: Tue, 08 Jun 2010 16:13:42 GMTContent-Type: text/xml; charset=UTF-8X-Powered-By: Servlet/2.5 JSP/2.1----------------------------------------  

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