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• Python progression path - From apprentice to guru

  - by Morlock

  Hi all, I've been learning, working, and playing with Python for a year and a half now. As a biologist slowly making the turn to bio-informatics, this language has been a the very core of all the major contributions I have made in the lab. (bash and R scripts have helped some too. My C++ capabilities are very not functional yet). I more or less fell in love with the way Python permits me to express beautiful solutions and also with the semantics of the language that allows such a natural flow from thoughts to workable code. What I would like to know from you is your answer to a kind of question I have seldom seen in this or other forums. Let me sum up what I do NOT want to ask first ;) I don't want to know how to QUICKLY learn Python Nor do I want to find out the best way to get acquainted with the language Finally, I don't want to know a 'one trick that does it all' approach. What I do want to know your opinion about, is: What are the steps YOU would recommend to a Python journeyman, from apprenticeship to guru status (feel free to stop wherever your expertise dictates it), in order that one IMPROVES CONSTANTLY, becoming a better and better Python coder, one step at a time. The kind of answers I would enjoy (but feel free to surprise the readership :P ), is formatted more or less like this: Read this (eg: python tutorial), pay attention to that kind of details Code for so manytime/problems/lines of code Then, read this (eg: this or that book), but this time, pay attention to this Tackle a few real-life problems Then, proceed to reading Y. Be sure to grasp these concepts Code for X time Come back to such and such basics or move further to... (you get the point :) This process depicts an iterative Learn/Code cycle, and I really care about knowing your opinion on what exactly one should pay attention to, at various stages, in order to progress CONSTANTLY (with due efforts, of course). If you come from a specific field of expertise, discuss the path you see as appropriate in this field. Thanks a lot for sharing your opinions and good Python coding!

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• xcodebuild: error: 'file' is not a workspace file

  - by Vladimir Voitekhovski

  there were no problem but now my job in Jenkins CI failed. I try to rename Xcode workspace like RacingPost.xcworkspace no changes. Try to delete this options at all, this job also failed. Configuration: XCODEPROJECTDIRECTORY=. TARGET_BUILD_DIR=${XCODEPROJECTDIRECTORY}/build XCODEWORKSPACE=RacingPost.xcodeproj XCODESCHEME=UnitTests XCODECONFIGURATION=ENTERPRISE-HD XCODESDK=iphoneos XCODEARGS="TEST_AFTER_BUILD=YES" XCODEBUILD_APP_NAME=RacingPost.app XCODETARGET=UnitTests XCODEPROJECT=RacingPost.xcodeproj IPA_PATH=${TARGET_BUILD_DIR}/RacingPost.ipa xcrun -sdk iphoneos PackageApplication -v "$(${XCTOOL_HOME}/xctool.sh -scheme RacingPost -project ${XCODEPROJECT} -configuration "${XCODECONFIGURATION}" -sdk "${XCODESDK}" -showBuildSettings -workspace ${WORKSPACE}| grep TARGET_BUILD_DIR | cut -d = -f 2 | cut -d . -f 1 | head -1 | sed 's/^[ ^t]*//')/${XCODEBUILD_APP_NAME}" -o "${IPA_PATH}" Output: 17:33:25 ** BUILD SUCCEEDED ** (58104 ms) 17:33:27 [RGP-ODC_RacingPost_iPad_staging] $ /bin/bash -xe /var/folders/df/575wx61n4dzdlw_48pgsjwk40000gn/T/hudson6052564280091633098.sh 17:33:27 + cd . 17:33:27 ++ /Users/epadmin/ci-tools/xctool/xctool.sh -scheme RacingPost -project RacingPost.xcodeproj - configuration ENTERPRISE-HD -sdk iphoneos -showBuildSettings -workspace /Users/epadmin/jenkins-slave/workspace/RGP- ODC_RacingPost_iPad_staging 17:33:27 ++ grep TARGET_BUILD_DIR 17:33:27 ++ cut -d = -f 2 17:33:27 ++ cut -d . -f 1 17:33:27 ++ head -1 17:33:27 ++ sed 's/^[ ^t]*//' 17:33:30 xcodebuild: error: '/Users/epadmin/jenkins-slave/workspace/RGP-ODC_RacingPost_iPad_staging' is not a workspace file. 17:33:30 + xcrun -sdk iphoneos PackageApplication -v /RacingPost.app -o ./build/RacingPost.ipa 17:33:30 error: Specified application doesn't exist or isn't a bundle directory : '/RacingPost.app' 17:33:30 Build step 'Execute shell' marked build as failure My structure of folders on node: epadmin@epclus1macp02:~/jenkins-slave/workspace/RGP-ODC_RacingPost_iPad_staging$ ls drwxr-xr-x 21 epadmin staff 714B May 29 10:28 ./ drwxr-xr-x 37 epadmin staff 1.2K May 29 10:33 ../ drwxr-xr-x 7 epadmin staff 238B May 29 10:28 .svn/ drwxr-xr-x 10 epadmin staff 340B Apr 18 09:02 RacingPost/ drwxr-xr-x 10 epadmin staff 340B May 29 09:27 RacingPost.xcodeproj/ drwxr-xr-x 10 epadmin staff 340B May 7 09:04 RacingPostUtilApp/ drwxr-xr-x 3 epadmin staff 102B May 18 02:16 Source/ drwxr-xr-x 75 epadmin staff 2.5K Apr 16 09:03 UnitTests/ drwxr-xr-x 16 epadmin staff 544B May 29 09:05 _certs/ drwxr-xr-x 3 epadmin staff 102B Apr 15 09:03 _doc/ drwxr-xr-x 4 epadmin staff 136B Apr 15 09:03 _provisioning/ drwxr-xr-x 3 epadmin staff 102B May 29 10:31 build/ -rw-r--r-- 1 epadmin staff 9.9K May 19 04:39 build.xml

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• Making Vim ubiquitous?

  - by Hamish Downer

  The Pragmatic Programmer recommends that you should use one text editor for everything. My chosen weapon editor is Vim. So I want to collect all the ways in which Vim (and the Vim keybindings) can be used and setting up your computer to make Vim work well. This includes how to embed Vim in your IDE, web browser, email client, command shell ... But I don't want Vim tips - there are other questions for them. I want tips to get into Vim, or Vim mode. Though tips about Vim mode not in an editor would be allowed (e.g. tips for vi mode when using Bash). Update: Going quite well so far, with ways to edit in Vim/gVim, or to get vi mode in Firefox, Safari, Thunderbird, many IDEs and command line applications, MS Outlook and Word. But I'm wondering if there are more. Particular applications I wonder about include OpenOffice.org KOffice Kmail Evolution Internet Explorer GIMP and Photoshop ... (only joking ;)

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• Getting past dates in HP-UX with ksh

  - by Alejandro Atienza Ramos

  Ok, so I need to translate a script from a nice linux & bash configuration to ksh in hp-ux. Each and every command expects a different syntax and i want to kill myself. But let's skip the rant. This is part of my script anterior=`date +"%Y%0m" -d '1 month ago'` I basically need to get a past date in format 201002. Never mind the thing that, in the new environment, %0m means "no zeroes", while actually in the other one it means "yes, please put that zero on my string". It doesn't even accept the "1 month ago". I've read the man date for HP-UX and it seems you just can't do date arithmetic with it. I've been looking around for a while but all i find are lengthy solutions. I can't quite understand that such a typical administrative task like adding dates needs so much fuss. Isn't there a way to convert my one-liner to, well, i don't know, another one? Come on, i've seen proposed solutions that used bc, had thirty plus lines and magic number all over the script. The simplest solutions seem to use perl... but i don't know how to modify them, as they're quite arcane. Thanks!

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• socket problem with MySQL

  - by Hristo

  This is a recent problem... MySQL was working and a couple of days ago I must have done something. I deleted MySQL and tried reinstalling using the .dmg file. The mysql.sock file never gets created and I get the following error messages: Hristo$ mysql Enter password: ERROR 2002 (HY000): Can't connect to local MySQL server through socket '/var/mysql/mysql.sock' (2) I also tried stopping Apache and installing but Apache gave me an error... I don't know if this is good or bad: Hristo$ sudo apachectl stop launchctl: Error unloading: org.apache.httpd I tried the MacPorts installation as well but the socket file still didn't get created. I don't really know what to do and I don't want to reinstall Snow Leopard and start from scratch :/ I also tried installing the 32-bit version and same deal. No luck. Finally... I tried doing the source installation but when I get to the configuration step, I get the following error: -bash: ./configure: No such file or directory The file is "mysql-5.1.47-osx10.6-x86_64.tar.gz" so I think it is the proper file for source installation and yes I have a 64 bit system. I don't know what to do anymore. Any ideas? Thanks, Hristo

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• error when running mysql2psql

  - by Mateo Acebedo

  I am trying to migrate a mysql database to a psql database, and after installing, I write the running command and instead of generationg the mysql2psql.yml file, this is what is being printed on my git bash window. $ mysql2psql c:/Ruby200/lib/ruby/2.0.0/rubygems/core_ext/kernel_require.rb:45:in `require': c annot load such file -- 2.0/mysql_api (LoadError) from c:/Ruby200/lib/ruby/2.0.0/rubygems/core_ext/kernel_require.rb:45:in `require' from c:/Ruby200/lib/ruby/gems/2.0.0/gems/mysql-2.8.1-x86-mingw32/lib/mys ql.rb:7:in `rescue in ' from c:/Ruby200/lib/ruby/gems/2.0.0/gems/mysql-2.8.1-x86-mingw32/lib/mys ql.rb:2:in `' from c:/Ruby200/lib/ruby/2.0.0/rubygems/core_ext/kernel_require.rb:45:in `require' from c:/Ruby200/lib/ruby/2.0.0/rubygems/core_ext/kernel_require.rb:45:in `require' from c:/Ruby200/lib/ruby/gems/2.0.0/gems/mysql2psql-0.1.0/lib/mysql2psql /mysql_reader.rb:1:in `' from c:/Ruby200/lib/ruby/2.0.0/rubygems/core_ext/kernel_require.rb:45:in `require' from c:/Ruby200/lib/ruby/2.0.0/rubygems/core_ext/kernel_require.rb:45:in `require' from c:/Ruby200/lib/ruby/gems/2.0.0/gems/mysql2psql-0.1.0/lib/mysql2psql .rb:5:in `' from c:/Ruby200/lib/ruby/2.0.0/rubygems/core_ext/kernel_require.rb:45:in `require' from c:/Ruby200/lib/ruby/2.0.0/rubygems/core_ext/kernel_require.rb:45:in `require' from c:/Ruby200/lib/ruby/gems/2.0.0/gems/mysql2psql-0.1.0/bin/mysql2psql :5:in `' from c:/Ruby200/bin/mysql2psql:23:in `load' from c:/Ruby200/bin/mysql2psql:23:in `' Any thoughts?

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• PackageMaker install script for rxtx

  - by vinzenzweber

  I am using PackageMaker to create an installer for my application. During installation I need to run a bash script to properly install rxtx, a JNI library for serial port communication. This library needs to have the directory /var/lock in place with user "root" and group "uucp". The installation script also needs to add the current user to the group "uucp" for the lib to be able to write to /var/lock. Now when I run my application installer the preinstall script is run as root. Therefore "whoami" returns root instead of the user who is actually running the installer. The result is that rxtx is not able to create lock files in /var/lock because the actual user was not added as a member to "uucp". How can I get the user while my script is run by the installer. Or is it better to set the permissions for /var/lock to a different group maybe? Any suggestions are welcome! !/bin/sh curruser=whoami logger "Setting permissions for /var/lock for user $curruser!" if [ ! -d /var/lock ] then logger "Creating /var/lock!" sudo mkdir /var/lock fi sudo chgrp uucp /var/lock sudo chmod 775 /var/lock MacOSX 10.5 and later use dscl if [ sudo dscl . -read /Groups/uucp GroupMembership | grep $curruser | wc -l = "0" ] then logger "Add user $curruser to /Groups/uucp!" sudo dscl . -append /Groups/uucp GroupMembership $curruser # to revert use: # sudo dscl . -delete /Groups/uucp GroupMembership $curruser else logger "GroupMembership of /var/lock not changed!" fi

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• How to run autoconf in OSX linking to specified OS SDK

  - by kroko

  Hello! I have written a small command line tool that includes some GPL code. Everything runs smothly. Using os 10.6. The external code used has a config.h header file, made by calling autoconf. I'd like to deploy the tool to different OS versions. Thus config.h could look like // config.h #if MAC_OS_X_VERSION_MAX_ALLOWED == MAC_OS_X_VERSION_10_4 // autoconf created config.h content for 10.4 comes here #elif MAC_OS_X_VERSION_MAX_ALLOWED == MAC_OS_X_VERSION_10_5 // autoconf created config.h content for 10.5 comes here #elif MAC_OS_X_VERSION_MAX_ALLOWED == MAC_OS_X_VERSION_10_6 // autoconf created config.h content for 10.6 comes here #else #error "muahahaha" #endif What is the way to tell autoconf to use /Developer/SDKs/MacOSX10.XXXX.sdk/usr/ while generating the config.h? In order to test it I have run #!/bin/bash # for 10.6 export CC="/usr/bin/gcc-4.2" export CXX="/usr/bin/g++-4.2" export MACOSX_DEPLOYMENT_TARGET="10.6" export OSX_SDK="/Developer/SDKs/MacOSX10.6.sdk" export OSX_CFLAGS="-isysroot $OSX_SDK -arch x86_64 -arch i386" export OSX_LDFLAGS="-Wl,-syslibroot,$OSX_SDK -arch x86_64 -arch i386" export CFLAGS=$OSX_CFLAGS export CXXFLAGS=$OSX_CFLAGS export LDFLAGS=$OSX_LDFLAGS before calling ./configure on OS 10.6. I know that the configure script looks for libintl.h, which is not in the "out of box 10.6 / SDK", but is present in the local machine under /usr/local The config.h header file produced with method described above has info that libintl.h is in the system- thus "linking" autoconf only to SDK has failed. Is it happening because... "we don't have a crystal ball"? :). Or is it incorrect "setup"/flag-export before running autoconf, which I hope is the case? If so, then what would be the correct way to set up envvariables? Many thanks in advance.

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• Linux PDF/Postscript Optimizing

  - by Sheldon Ross

  So I have a report system built using Java and iText. PDF templates are created using Scribus. The Java code merges the data into the document using iText. The files are then copied over to a NFS share, and a BASH script prints them. I use acroread to convert them to PS, then lpr the PS. The FOSS application pdftops is horribly inefficient. My main problem is that the PDF's generated using iText/Scribus are very large. And I've recently run into the problem where acroread pukes because it hits 4gb of mem usage on large (300+ pages) documents. (Adobe is painfully slow at updating stuff to 64 bit). Now I can use Adobe reader on Windows, and use the Create Print PDF option or whatever its called, and it greatly( 10x) reduces the size of the PDF(it removes alot of metadata about form fields and such it appears) and produces a PDF that is basically a Print image. My question is does anyone know of a good solution/program for doing something similiar on Linux. Ideally, it would optimize the PDF, reduce size, and reduce PS complexity so the printer could print faster as it takes about 15-20 seconds a page to print right now.

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• CentOS - Convert Each WAV File to MP3/OGG

  - by Benny

  I am trying to build a script (I'm pretty new to linux scripting) and I can't seem to figure out why I'm not able to run this script. If I keep the header (#!/bin/sh) in, I get the following: -bash: /tmp/ConvertAndUpdate.sh: /bin/sh^M: bad interpreter: No such file or directory If I take it out, I get the following: 'tmp/ConvertAndUpdate.sh: line 2: syntax error near unexpected token `do 'tmp/ConvertAndUpdate.sh: line 2: `do Any ideas? Here is the full script: #!/bin/sh for file in *.wav; do mp3=$(basename .$file. .wav).mp3; #echo $mp3 nice lame -b 16 -m m -q 9 .resample 8 .$file. .$mp3.; touch .reference .$file. .$mp3.; chown apache.apache .$mp3.; chmod 600 .$mp3.; rm -f .$file.; mv .$file. /converted; sql="UPDATE recordings SET IsReady=1 WHERE Filename='${file%.*}'" echo $sql | mysql --user=me --password=pasword Recordings #echo $sql done

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• Running multiple instances of tomcat in eclipse WTP

  - by lisak

  Hey, SCENARIO: 10 CATALINA_BASEs with own configuration (always the same port numbers 8080, but 10 different IP/hostnames on one host via virtual IPs). created a server in WTP and pick "Use the custom location" option in the server configuration in eclipse. New configuration files are created in workspace/Server/server-name-config/ Set up the server path and deploy path for my catalina base (not the internal .metadata one) After I started it, the new configuration files overwrote the original catalina-base/conf files I had there - I was glad, it should be like this but after I made changes in the eclipse config files workspace/Server/server-name-config/ and restarted the server, the changes didn't appeared in the original files in CATALINA_BASE/conf What the hell is that ? So I set the CATALINA_BASE/conf/server.xml to fault configuration and restarted tomcat from eclipse and it worked ! it took the configuration from /Server/server-name-config/server.xml Then I deleted CATALINA_BASE/conf/server.xml and it said that there is no server.xml in catalina base ! How is it possible ? I don't understand why eclipse WTP developers made so tight integration. There should by just symbolic links in /Server/server-name-config/ pointing to CATALINA_BASE/conf/ ... now there is a weird system which is totally unpredictable. The changes in /Server/server-name-config/ are not reflected in CATALINA_BASE/conf ... from where the standard bootstrap.jar or other catalina classloaders and classes build server, engine and other objects with particular setting. Moreover the CATALINA_BASEs could be used outside eclipse then. The second problem, I'm setting up various things in CATALINA_BASE/bin/startup.sh and setenv.sh which is easy cause I can use bash for it. Is then modifying VM parameters in the "Open launch configuration" settings the only way how to do it in eclipse ? Sorry for such a huge pile of questions, but I'm annoyed by the fact that it is much better to not use eclipse WTP for this because it is very poorly designed and it's a shame because this would spare me a lot of time. And using the internal .metadata/ instances it's even more terrifying way that the one I described.

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• Cucumber could not find table; but its there. What is going on?

  - by JZ

  I'm working with cucumber and I'm running into difficulties. When I run "cucumber features", I am met with errors, cucumber is unable to find my requests table. What obvious mistake am I making? Thank you in advance! Bash: justin-zollarss-mac-pro:conversion justinz$ cucumber features Using the default profile... /Users/justinz/.gem/ruby/1.8/gems/rails-2.3.5/lib/rails/gem_dependency.rb:119:Warning: Gem::Dependency#version_requirements is deprecated and will be removed on or after August 2010. Use #requirement F-- (::) failed steps (::) Could not find table 'requests' (ActiveRecord::StatementInvalid) ./features/article_steps.rb:3 ./features/article_steps.rb:2:in `each' ./features/article_steps.rb:2:in `/^I have requests named (.+)$/' features/manage_articles.feature:7:in `Given I have requests named Foo, Bar' Failing Scenarios: cucumber features/manage_articles.feature:6 # Scenario: Conversion 1 scenario (1 failed) 3 steps (1 failed, 2 skipped) 0m0.154s justin-zollarss-mac-pro:conversion justinz$ Manage_articles.feature: Feature: Manage Articles In order to make sales As a customer I want to make conversions Scenario: Conversion Given I have requests named Foo, Bar When I go to the list of customers Then I should see a new "customer" Article_steps.rb: Given /^I have requests named (.+)$/ do |firsts| firsts.split(', ').each do |first| Request.create!(:first => first) pending # express the regexp above with the code you wish you had end end Then /^I should see a new "([^"]*)"$/ do |arg1| pending # express the regexp above with the code you wish you had end DB schema: ActiveRecord::Schema.define(:version => 20100528011731) do create_table "requests", :force => true do |t| t.string "institution" t.string "website" t.string "type" t.string "users" t.string "first" t.string "last" t.string "jobtitle" t.string "phone" t.string "email" t.datetime "created_at" t.datetime "updated_at" end end

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• How to stop tcpdump remotely using expect from a new telnet session

  - by The CodeWriter

  I am trying to stop the tcpdump command from running on a remote terminal. If I telnet to the terminal, start tcpdump, and then send a ^c, tcpdump stops with no issues. However if I telnet to the same terminal, start tcpdump, and then exit the telnet session, when I reconnect to the same telnet session I am unable to stop tcpdump via a ^c. When I do this instead of stopping tcpdump it seems that it just quits the telnet session and tcpdump continues to run on the remote terminal. I provided my script below. Any help is greatly appreciated. #!/usr/local/bin/expect -f exp_internal 1 set timeout 30 spawn /bin/bash expect "] " send "telnet 192.168.62.133 10006\r" expect "Escape character is '^]'." send "\r" expect "# " set now [clock format [clock seconds] -format {%d_%b_%Y_%H%M%S}] set command "tcpdump -vv -i trf400 ip proto 89 -s 65535 -w /tmp/test_term420_${now}.pcp " send "$command\r" expect "tcpdump: listening on" # This works correctly. tcpdump quits and I am returned to the expected prompt send "\x03" expect "# " send "$command\r" expect "tcpdump: listening on" # Exit telnet session send -- "\x1d" expect "telnet> " send -- "q\r" expect "] " # Reconnect to telnet session send "telnet 192.168.62.133 10006\r" expect "Escape character is '^]'." send "\r" # This does not work as intended. The ^c quits the telnet session instead of stopping tcpdump send "\x03" expect "] " send "ls\r" expect "] "

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• ClassNotFoundException when connecting to Mysql with JDBC

  - by Jacob Lyles

  I'm getting the following error when I try to run a simple Java JDBC program at the command line: Exception in thread "main" java.lang.NoClassDefFoundError: LoadDriver/java Caused by: java.lang.ClassNotFoundException: LoadDriver.java at java.net.URLClassLoader$1.run(URLClassLoader.java:200) at java.security.AccessController.doPrivileged(Native Method) at java.net.URLClassLoader.findClass(URLClassLoader.java:188) at java.lang.ClassLoader.loadClass(ClassLoader.java:315) at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:330) at java.lang.ClassLoader.loadClass(ClassLoader.java:250) at java.lang.ClassLoader.loadClassInternal(ClassLoader.java:398) Here's the simple Java program, copied right out of the JDBC docs: import java.sql.Connection; import java.sql.DriverManager; import java.sql.SQLException; // Notice, do not import com.mysql.jdbc.* // or you will have problems! public class LoadDriver { public static void main(String[] args) { try { // The newInstance() call is a work around for some // broken Java implementations Class.forName("com.mysql.jdbc.Driver").newInstance(); } catch (Exception ex) { throw ex; // handle the error } } } Problem is, I'm bloody sure my bash shell $ClASSPATH variable is pointed at the correct .jar file. To be sure, I copied the JDBC .jar to the same directory as my program and ran it as follows: java -classpath ./mysql-connector-java-5.1.12-bin.jar LoadDriver.java I still get the same error. I'm running under Mac OSX, if it matters.

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• mocking collection behavior with Moq

  - by Stephen Patten

  Hello, I've read through some of the discussions on the Moq user group and have failed to find an example and have been so far unable to find the scenario that I have. Here is my question and code: // 6 periods var schedule = new List<PaymentPlanPeriod>() { new PaymentPlanPeriod(1000m, args.MinDate.ToString()), new PaymentPlanPeriod(1000m, args.MinDate.Value.AddMonths(1).ToString()), new PaymentPlanPeriod(1000m, args.MinDate.Value.AddMonths(2).ToString()), new PaymentPlanPeriod(1000m, args.MinDate.Value.AddMonths(3).ToString()), new PaymentPlanPeriod(1000m, args.MinDate.Value.AddMonths(4).ToString()), new PaymentPlanPeriod(1000m, args.MinDate.Value.AddMonths(5).ToString()) }; // Now the proxy is correct with the schedule helper.Setup(h => h.GetPlanPeriods(It.IsAny<String>(), schedule)); Then in my tests I use Periods but the Mocked _PaymentPlanHelper never populates the collection, see below for usage: public IEnumerable<PaymentPlanPeriod> Periods { get { if (CanCalculateExpression()) _PaymentPlanHelper.GetPlanPeriods(this.ToString(), _PaymentSchedule); return _PaymentSchedule; } } Now if I change the mocked object to use another overloaded method of GetPlanPeriods that returns a List like so : var schedule = new List<PaymentPlanPeriod>() { new PaymentPlanPeriod(1000m, args.MinDate.ToString()), new PaymentPlanPeriod(1000m, args.MinDate.Value.AddMonths(1).ToString()), new PaymentPlanPeriod(1000m, args.MinDate.Value.AddMonths(2).ToString()), new PaymentPlanPeriod(1000m, args.MinDate.Value.AddMonths(3).ToString()), new PaymentPlanPeriod(1000m, args.MinDate.Value.AddMonths(4).ToString()), new PaymentPlanPeriod(1000m, args.MinDate.Value.AddMonths(5).ToString()) }; helper.Setup(h => h.GetPlanPeriods(It.IsAny<String>())).Returns(new List<PaymentPlanPeriod>(schedule)); List<PaymentPlanPeriod> result = new _PaymentPlanHelper.GetPlanPeriods(this.ToString()); This works as expected. Any pointers would be awesome, as long as you don't bash my architecture... :) Thank you, Stephen

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• Why is the Clojure Hello World program so slow compared to Java and Python?

  - by viksit

  Hi all, I'm reading "Programming Clojure" and I was comparing some languages I use for some simple code. I noticed that the clojure implementations were the slowest in each case. For instance, Python - hello.py def hello_world(name): print "Hello, %s" % name hello_world("world") and result, $ time python hello.py Hello, world real 0m0.027s user 0m0.013s sys 0m0.014s Java - hello.java import java.io.*; public class hello { public static void hello_world(String name) { System.out.println("Hello, " + name); } public static void main(String[] args) { hello_world("world"); } } and result, $ time java hello Hello, world real 0m0.324s user 0m0.296s sys 0m0.065s and finally, Clojure - hellofun.clj (defn hello-world [username] (println (format "Hello, %s" username))) (hello-world "world") and results, $ time clj hellofun.clj Hello, world real 0m1.418s user 0m1.649s sys 0m0.154s Thats a whole, garangutan 1.4 seconds! Does anyone have pointers on what the cause of this could be? Is Clojure really that slow, or are there JVM tricks et al that need to be used in order to speed up execution? More importantly - isn't this huge difference in performance going to be an issue at some point? (I mean, lets say I was using Clojure for a production system - the gain I get in using lisp seems completely offset by the performance issues I can see here). The machine used here is a 2007 Macbook Pro running Snow Leopard, a 2.16Ghz Intel C2D and 2G DDR2 SDRAM. BTW, the clj script I'm using is from here and looks like, #!/bin/bash JAVA=/System/Library/Frameworks/JavaVM.framework/Versions/1.6/Home/bin/java CLJ_DIR=/opt/jars CLOJURE=$CLJ_DIR/clojure.jar CONTRIB=$CLJ_DIR/clojure-contrib.jar JLINE=$CLJ_DIR/jline-0.9.94.jar CP=$PWD:$CLOJURE:$JLINE:$CONTRIB # Add extra jars as specified by `.clojure` file if [ -f .clojure ] then CP=$CP:`cat .clojure` fi if [ -z "$1" ]; then $JAVA -server -cp $CP \ jline.ConsoleRunner clojure.lang.Repl else scriptname=$1 $JAVA -server -cp $CP clojure.main $scriptname -- $* fi

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• Make seems to think a prerequisite is an intermediate file, removes it

  - by James

  For starters, this exercise in GNU make was admittedly just that: an exercise rather than a practicality, since a simple bash script would have sufficed. However, it brought up interesting behavior I don't quite understand. I've written a seemingly simple Makefile to handle generation of SSL key/cert pairs as necessary for MySQL. My goal was for make <name> to result in <name>-key.pem, <name>-cert.pem, and any other necessary files (specifically, the CA pair if any of it is missing or needs updating, which leads into another interesting follow-up exercise of handling reverse deps to reissue any certs that had been signed by a missing/updated CA cert). After executing all rules as expected, make seems to be too aggressive at identifying intermediate files for removal; it removes a file I thought would be "safe" since it should have been generated as a prereq to the main rule I'm invoking. (Humbly translated, I likely have misinterpreted make's documented behavior to suit my expectation, but don't understand how. ;-) Edited (thanks, Chris!) Adding %-cert.pem to .PRECIOUS does, of course, prevent the deletion. (I had been using the wrong syntax.) Makefile: OPENSSL = /usr/bin/openssl # Corrected, thanks Chris! .PHONY: clean default: ca clean: rm -I *.pem %: %-key.pem %-cert.pem @# Placeholder (to make this implicit create a rule and not cancel one) Makefile: @# Prevent the catch-all from matching Makefile ca-cert.pem: ca-key.pem $(OPENSSL) req -new -x509 -nodes -days 1000 -key ca-key.pem $@ %-key.pem: $(OPENSSL) genrsa 2048 $@ %-cert.pem: %-csr.pem ca-cert.pem ca-key.pem $(OPENSSL) x509 -req -in $ $@ Output: $ make host1 /usr/bin/openssl genrsa 2048 ca-key.pem /usr/bin/openssl req -new -x509 -nodes -days 1000 -key ca-key.pem ca-cert.pem /usr/bin/openssl genrsa 2048 host1-key.pem /usr/bin/openssl req -new -days 1000 -nodes -key host1-key.pem host1-csr.pem /usr/bin/openssl x509 -req -in host1-csr.pem -days 1000 -CA ca-cert.pem -CAkey ca-key.pem -set_serial 01 host1-cert.pem rm host1-csr.pem host1-cert.pem This is driving me crazy, and I'll happily try any suggestions and post results. If I'm just totally noobing out on this one, feel free to jibe away. You can't possibly hurt my feelings. :)

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• Why does Fabric display the disconnect from server message for almost 2 minutes?

  - by Matthew Rankin

  Fabric displays Disconnecting from username@server... done. for almost 2 minutes prior to showing a new command prompt whenever I issue a fab command. This problem exists when using Fabric commands issued to both an internal server and a Rackspace cloud server. Below I've included the auth.log from the server, and I didn't see anything in the logs on my MacBook. Any thoughts as to what the problem is? Server's SSH auth.log with LogLevel VERBOSE Apr 21 13:30:52 qsandbox01 sshd[19503]: Accepted password for mrankin from 10.10.100.106 port 52854 ssh2 Apr 21 13:30:52 qsandbox01 sshd[19503]: pam_unix(sshd:session): session opened for user mrankin by (uid=0) Apr 21 13:30:52 qsandbox01 sudo: mrankin : TTY=unknown ; PWD=/home/mrankin ; USER=root ; COMMAND=/bin/bash -l -c apache2ctl graceful Apr 21 13:30:53 qsandbox01 sshd[19503]: pam_unix(sshd:session): session closed for user mrankin Server Configuration OS: Ubuntu 9.10 OpenSSH: Ubuntu package version 1.5.1p1-6ubuntu2 Client Configuration OS: Mac OS X 10.6.3 Fabric ver 0.9 Vritualenv ver 1.4.7 pip ver 0.7 Thoughts on Cause of the Issue I don't know how long the problem has existed. However, I know that at one point I didn't have this problem. Things that have changed since then are that I have recreated my virtualenv's using virtualenv 1.4.7, virtualenvwrapper 2.1, and pip 0.7. Not sure if this is related, but it is a thought since I run my fabfiles from within a virtualenv.

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• Getting svn: E170000: Unrecognized URL scheme for my custom Svn Gradle plugin

  - by Ip Doh

  I wrote a custom gradle plugin using groovy to do basic svn tasks like, Checkout, Clean, Tag etc. The groovy class calls the svn command line client to do these operations, It works fine when i run it on my windows system but the same plugin gives the following error when i run it on a linux system (Centos). svn: E170000: Unrecognized URL scheme for '%22https://source.mycompany.net/svn/MyProject/trunk%22' Am able to make the same calls to the command line client through the command prompt or shell script without any issues. So what is the difference with Here is my code sample String command =String.format("svn co -r %d --non-interactive --trust-server-cert -- username %s --password %s --depth infinity \"%s\" \"%s\"", getRevision(), getUserName(), getUserPassword(), getSrcUrl(), getDir()); Process svnProcess = Runtime.getRuntime().exec(command); BufferedReader stdInput = new BufferedReader(new InputStreamReader(svnProcess.getInputStream())); BufferedReader stdError = new BufferedReader(new InputStreamReader(svnProcess.getErrorStream())); String statusOutputLine ="" while ((statusOutputLine = stdInput.readLine()) != null) { logger.quiet(" " + statusOutputLine); } while (( statusOutputLine = stdError.readLine()) != null) { logger.error(statusOutputLine) throw new Exception(statusOutputLine) } logger.quiet("Successfully Checked out the work space") i do have neon installed on the system -bash-4.1$ svn --version svn, version 1.6.11 (r934486) compiled Jun 25 2011, 11:30:15 Copyright (C) 2000-2009 CollabNet. Subversion is open source software, see http://subversion.tigris.org/ This product includes software developed by CollabNet (http://www.Collab.Net/). The following repository access (RA) modules are available: ra_neon : Module for accessing a repository via WebDAV protocol using Neon. handles 'http' scheme handles 'https' scheme ra_svn : Module for accessing a repository using the svn network protocol. with Cyrus SASL authentication handles 'svn' scheme ra_local : Module for accessing a repository on local disk. handles 'file' scheme

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• Submitting R jobs using PBS

  - by Tony

  I am submitting a job using qsub that runs parallelized R. My intention is to have R programme running on 4 different cores rather than 8 cores. Here are some of my settings in PBS file: #PBS -l nodes=1:ppn=4 .... time R --no-save < program1.R > program1.log I am issuing the command "ta job_id" and I'm seeing that 4 cores are listed. However, the job occupies a large amount of memory(31944900k used vs 32949628k total). If I were to use 8 cores, the jobs got hang due to memory limitation. top - 21:03:53 up 77 days, 11:54, 0 users, load average: 3.99, 3.75, 3.37 Tasks: 207 total, 5 running, 202 sleeping, 0 stopped, 0 zombie Cpu(s): 30.4%us, 1.6%sy, 0.0%ni, 66.8%id, 0.0%wa, 0.0%hi, 1.2%si, 0.0%st Mem: 32949628k total, 31944900k used, 1004728k free, 269812k buffers Swap: 2097136k total, 8360k used, 2088776k free, 6030856k cached Here is a snapshot when issuing command ta job_id PID USER PR NI VIRT RES SHR S %CPU %MEM TIME+ COMMAND 1794 x 25 0 6247m 6.0g 1780 R 99.2 19.1 8:14.37 R 1795 x 25 0 6332m 6.1g 1780 R 99.2 19.4 8:14.37 R 1796 x 25 0 6242m 6.0g 1784 R 99.2 19.1 8:14.37 R 1797 x 25 0 6322m 6.1g 1780 R 99.2 19.4 8:14.33 R 1714 x 18 0 65932 1504 1248 S 0.0 0.0 0:00.00 bash 1761 x 18 0 63840 1244 1052 S 0.0 0.0 0:00.00 20016.hpc 1783 x 18 0 133m 7096 1128 S 0.0 0.0 0:00.00 python 1786 x 18 0 137m 46m 2688 S 0.0 0.1 0:02.06 R How can I prevent other users to use the other 4 cores? I like to mask somehow that my job is using 8 cores with 4 cores idling. Could anyone kindly help me out on this? Can this be solved using pbs? Many Thanks

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• Uncompress OpenOffice files for better storage in version control

  - by Craig McQueen

  I've heard discussion about how OpenOffice (ODF) files are compressed zip files of XML and other data. So making a tiny change to the file can potentially totally change the data, so delta compression doesn't work well in version control systems. I've done basic testing on an OpenOffice file, unzipping it and then rezipping it with zero compression. I used the Linux zip utility for my testing. OpenOffice will still happily open it. So I'm wondering if it's worth developing a small utility to run on ODF files each time just before I commit to version control. Any thoughts on this idea? Possible better alternatives? Secondly, what would be a good and robust way to implement this little utility? Bash shell that calls zip (probably Linux only)? Python? Any gotchas you can think of? Obviously I don't want to accidentally mangle a file, and there are several ways that could happen. Possible gotchas I can think of: Insufficient disk space Some other permissions issue that prevents writing the file or temporary files ODF document is encrypted (probably should just leave these alone; the encryption probably also causes large file changes and thus prevents efficient delta compression)

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• mod_cgi , mod_fastcgi, mod_scgi , mod_wsgi, mod_python, FLUP. I don't know how many more. what is mo

  - by claws

  I recently learnt Python. I liked it. I just wanted to use it for web development. This thought caused all the troubles. But I like these troubles :) Coming from PHP world where there is only one way standardized. I expected the same and searched for python & apache. http://stackoverflow.com/questions/449055/setting-up-python-on-windows-apache says Stay away from mod_python. One common misleading idea is that mod_python is like mod_php, but for python. That is not true. So what is equivalent of mod_php in python? I need little clarification on this one http://stackoverflow.com/questions/219110/how-python-web-frameworks-wsgi-and-cgi-fit-together CGI, FastCGI and SCGI are language agnostic. You can write CGI scripts in Perl, Python, C, bash, or even Assembly :). So, I guess mod_cgi , mod_fastcgi, mod_scgi are their corresponding apache modules. Right? WSGI is some kind of optimized/improved inshort an efficient version specifically designed for python language only. In order to use this mod_wsgi is a way to go. right? This leaves out mod_python. What is it then? Apache - mod_fastcgi - FLUP (via CGI protocol) - Django (via WSGI protocol) Flup is another way to run with wsgi for any webserver that can speak FCGI, SCGI or AJP What is FLUP? What is AJP? How did Django come in the picture? These questions raise quetions about PHP. How is it actually running? What technology is it using? mod_php & mod_python what are the differences? In future if I want to use Perl or Java then again will I have to get confused? Kindly can someone explain things clearly and give a Complete Picture.

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• mount not working properly on Cygwin

  - by Code Dance

  I have WinXP box and Cygwin installed on it. There are many network drive mapped on windows. when I execute mount command on windows (which uses the same mount executable as Cygwin) a get list of network mapped drives. But same when I do through Cygwin, I see only C: is mapped. On Windows command prompt. C:\CodeDance mount C:\cygwin\bin on /usr/bin type system (textmode) C:\cygwin\lib on /usr/lib type system (textmode) C:\cygwin on / type system (textmode) c:\Own on /own type system (binmode) v: on /cygdrive/v type system (binmode) c: on /cygdrive/c type system (textmode,noumount) k: on /cygdrive/k type system (textmode,noumount) l: on /cygdrive/l type system (textmode,noumount) m: on /cygdrive/m type system (textmode,noumount) o: on /cygdrive/o type system (textmode,noumount) x: on /cygdrive/x type system (textmode,noumount) y: on /cygdrive/y type system (textmode,noumount) z: on /cygdrive/z type system (textmode,noumount) Cygwin, on bash code@DANCE /cygdrive $ mount C:\cygwin\bin on /usr/bin type system (textmode) C:\cygwin\lib on /usr/lib type system (textmode) C:\cygwin on / type system (textmode) c:\Own on /own type system (binmode) v: on /cygdrive/v type system (binmode) c: on /cygdrive/c type system (textmode,noumount) The /cygdrive/v that shown mounted above is not accessible either.

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• unix at command pass variable to shell script?

  - by Andrew

  Hi, I'm trying to setup a simple timer that gets started from a Rails Application. This timer should wait out its duration and then start a shell script that will start up ./script/runner and complete the initial request. I need script/runner because I need access to ActiveRecord. Here's my test lines in Rails output = `at #{(Time.now + 60).strftime("%H:%M")} < #{Rails.root}/lib/parking_timer.sh STRING_VARIABLE` return render :text => output Then my parking_timer.sh looks like this #!/bin/sh ~/PATH_TO_APP/script/runner -e development ~/PATH_TO_APP/lib/ParkingTimer.rb $1 echo "All Done" Finally, ParkingTimer.rb reads the passed variable with ARGV.each do|a| puts "Argument: #{a}" end The problem is that the Unix command "at" doesn't seem to like variables and only wants to deal with filenames. I either get one of two errors depending on how I position "s If I put quotes around the right hand side like so ... "~/PATH_TO_APP/lib/parking_timer.sh STRING_VARIABLE" I get, -bash: ~/PATH_TO_APP/lib/parking_timer.sh STRING_VARIABLE: No such file or directory I I leave the quotes out, I get, at: garbled time This is all happening on a Mac OS 10.6 box running Rails 2.3 & Ruby 1.8.6 I've already messed around w/ BackgrounDrb, and decided its a total PITA. I need to be able to cancel the job at any time before it is due.

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• Set up Gitosis, but can't clone

  - by Tim Rupe

  I've set up Gitosis on a remote Ubuntu box which I will refer to as linuxserver as my host in the following commands. I'm also connecting from a Windows box using Cygwin. I followed the instructions according to: http://scie.nti.st/2007/11/14/hosting-git-repositories-the-easy-and-secure-way I had no problems up until I needed to clone the gitosis-admin repository to my local machine git clone git@linuxserver:gitosis-admin.git When I do this, the command executes, but hangs there displaying nothing until I ctrl-c to get back to a command prompt. No messages are displayed at all. I'm pretty sure I have my ssh keys set up properly, because logging in using "ssh linuxserver" into my regular account works perfectly without asking for a password. Edit: Over the weekend I set up a near identical Ubuntu box at home, and had no problem setting up Gitosis. The only difference was that I was connecting from OSX instead of Cygwin. Edit: I've also discovered that when using the Bash Shell provided with "Git Extensions", I have no problems, so the issue definitely seems to be some kind of Cygwin conflict. Edit: Just an update, but about a month after posting this question, I switched to Mercurial, and found that I prefer it much more than git. Thanks for the suggestions, but I don't plan on going back to git to try any of them out.

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