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  • How to use R's ellipsis feature when writing your own function?

    - by Ryan Thompson
    The R language has a nifty feature for defining functions that can take a variable number of arguments. For example, the function data.frame takes any number of arguments, and each argument becomes the data for a column in the resulting data table. Example usage: > data.frame(letters=c("a", "b", "c"), numbers=c(1,2,3), notes=c("do", "re", "mi")) letters numbers notes 1 a 1 do 2 b 2 re 3 c 3 mi The function's signature includes an ellipsis, like this: function (..., row.names = NULL, check.rows = FALSE, check.names = TRUE, stringsAsFactors = default.stringsAsFactors()) { [FUNCTION DEFINITION HERE] } I would like to write a function that does something similar, taking multiple values and consolidating them into a single return value (as well as doing some other processing). In order to do this, I need to figure out how to "unpack" the ... from the function's arguments within the function. I don't know how to do this. The relevant line in the function definition of data.frame is object <- as.list(substitute(list(...)))[-1L], which I can't make any sense of. So how can I convert the ellipsis from the function's signature into, for example, a list? To be more specific, how can I write get_list_from_ellipsis in the code below? my_ellipsis_function(...) { input_list <- get.list.from.ellipsis(...) output_list <- lapply(X=input_list, FUN=do_something_interesting) return(output_list) } my_ellipsis_function(a=1:10,b=11:20,c=21:30)

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  • Is there a way to split a widescreen monitor in to two or more virtual monitors?

    - by Mike Thompson
    Like most developers I have grown to love dual monitors. I won't go into all the reasons for their goodness; just take it as a given. However, they are not perfect. You can never seem to line them up "just right". You always end up with the monitors at slight funny angles. And of course the bezel always gets in the way. And this is with identical monitors. The problem is much worse with different monitors -- VMWare's multi monitor feature won't even work with monitors of differnt resolutions. When you use multiple monnitors, one of them becomes your primary monitor of focus. Your focus may flip from one monitor to the other, but at any point in time you are usually focusing on only one monitor. There are exceptions to this (WinDiff, Excel), but this is generally the case. I suggest that having a single large monitor with all the benefits of multiple smaller monitors would be a better solution. Wide screen monitors are fantastic, but it is hard to use all the space efficiently. If you are writing code you are generally working on the left-hand side of the window. If you maximize an editor on a wide-screen monitor the right-hand side of the window will be a sea of white. Programs like WinSplit Revolution will help to organise your windows, but this is really just addressing the symptom, not the problem. Even with WinSplit Revolution, when you maximise a window it will take up the whole screen. You can't lock a window into a specific section of the screen. This is where virtual monitors comes in. What would be really nice is a video driver that sits on top of the existing driver, but allows a single monitor to be virtualised into multiple monitors. Control Panel would see your single physical monitor as two or more virtual monitors. The software could even support a virtual bezel to emphasise what is happening, or you could opt for seamless mode. Programs like WinSplit Revolution and UltraMon would still work. This virtual video driver would allow you to slice & dice your physical monitor into as many virtual monitors as you want. Does anybody know if such software exists? If not, are there any budding Windows display driver guru's out there willing to take up the challenge? I am not after the myriad of virtual desktop/window manager programs that are available. I get frustrated with these programs. They seem good at first but they usually have some strange behaviour and don't work well with other programs (such as WinSplit Revolution). I want the real thing!

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  • How can I manually interpolate string escapes in a Perl string?

    - by Ryan Thompson
    In perl suppose I have a string like 'hello\tworld\n', and what I want is: 'hello world ' That is, "hello", then a literal tab character, then "world", then a literal newline. Or equivalently, "hello\tworld\n" (note the double quotes). In other words, is there a function for taking a string with escape sequences and returning an equivalent string with all the escape sequences interpolated?

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  • Can I customize the indentation of ternary operators in emacs' cperl-mode?

    - by Ryan Thompson
    In emacs cperl-mode, ternary operators are not treated specially. If you break them over multiple lines, cperl-mode simply indents each line the same way it indents any continued statement, like this: $result = ($foo == $bar) ? 'result1' : ($foo == $baz) ? 'result2' : ($foo == $qux) ? 'result3' : ($foo == $quux) ? 'result4' : fail_result; This is not very readable. Is there some way that I can convince cperl-mode indent like this? $result = ($foo == $bar) ? 'result1' : ($foo == $baz) ? 'result2' : ($foo == $qux) ? 'result3' : ($foo == $quux) ? 'result4' : fail_result; By the way, code example from this question.

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  • More efficient way to find & tar millions of files

    - by Stu Thompson
    I've got a job running on my server at the command line prompt for a two days now: find data/ -name filepattern-*2009* -exec tar uf 2008.tar {} ; It is taking forever, and then some. Yes, there are millions of files in the target directory. But just running... find data/ -name filepattern-*2009* -print > filesOfInterest.txt ...takes only two hours or so. At the rate my job is running, it won't be finished for a couple of weeks.. That seems unreasonable. Is there a more efficient to do this? Maybe with a more complicated bash script? A secondary questions is "why is my current approach so slow?"

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  • What database table structure should I use for versions, codebases, deployables?

    - by Zac Thompson
    I'm having doubts about my table structure, and I wonder if there is a better approach. I've got a little database for version control repositories (e.g. SVN), the packages (e.g. Linux RPMs) built therefrom, and the versions (e.g. 1.2.3-4) thereof. A given repository might produce no packages, or several, but if there are more than one for a given repository then a particular version for that repository will indicate a single "tag" of the codebase. A particular version "string" might be used to tag a version of the source code in more than one repository, but there may be no relationship between "1.0" for two different repos. So if packages P and Q both come from repo R, then P 1.0 and Q 1.0 are both built from the 1.0 tag of repo R. But if package X comes from repo Y, then X 1.0 has no relationship to P 1.0. In my (simplified) model, I have the following tables (the x_id columns are auto-incrementing surrogate keys; you can pretend I'm using a different primary key if you wish, it's not really important): repository - repository_id - repository_name (unique) ... version - version_id - version_string (unique for a particular repository) - repository_id ... package - package_id - package_name (unique) - repository_id ... This makes it easy for me to see, for example, what are valid versions of a given package: I can join with the version table using the repository_id. However, suppose I would like to add some information to this database, e.g., to indicate which package versions have been approved for release. I certainly need a new table: package_version - version_id - package_id - package_version_released ... Again, the nature of the keys that I use are not really important to my problem, and you can imagine that the data column is "promotion_level" or something if that helps. My doubts arise when I realize that there's really a very close relationship between the version_id and the package_id in my new table ... they must share the same repository_id. Only a small subset of package/version combinations are valid. So I should have some kind of constraint on those columns, enforcing that ... ... I don't know, it just feels off, somehow. Like I'm including somehow more information than I really need? I don't know how to explain my hesitance here. I can't figure out which (if any) normal form I'm violating, but I also can't find an example of a schema with this sort of structure ... not being a DBA by profession I'm not sure where to look. So I'm asking: am I just being overly sensitive?

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  • Showing renames in hg log?

    - by Ryan Thompson
    I know that Mercurial can track renames of files, but how do I get it to show me renames instead of adds/removes when I do hg log? For instance, instead of: A bin/extract-csv-column.pl A bin/find-mirna-binding.pl A bin/xls2csv-separate-sheets.pl A lib/Text/CSV/Euclid.pm R src/extract-csv-column.pl R src/find-mirna-binding.pl R src/modules/Text/CSV/Euclid.pm R src/xls2csv-separate-sheets.pl I want some indication that four files have been moved. I think I read somewhere that the output is like this to preserve backward-compatibility with something-or-other, but I'm not worried about that.

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  • Using NSPredicate to filter on both Core attribute and entity

    - by Ben Thompson
    I have two entities in core data (call them entityOne and entityTwo). I have a entityOne<---entityTwo relationship between them. I am now trying to code an NSPredicate to fetch entityTwo objects on the following basis: Fetch entityTwo objects that have a relationship with a specified entityOne object. Filter out those entityTwo objects which have no value for one of their attributes. I am best doing both of these in an NSPredicate or is there a better way? I am trying the following: NSPredicate *predicate = [NSPredicate predicateWithFormat:@"(attribute <> "") AND (relationship == entityOne"]; [request setPredicate:predicate]; Any pointers on coding great fully received.

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  • In perl, how can I call a method whose name I have in a string?

    - by Ryan Thompson
    I'm trying to write some abstract code for searching through a list of similar objects for the first one whose attributes match specific values. In order to do this, I need to call a bunch of accessor methods and check all their values one by one. I'd like to use an abstraction like this: sub verify_attribute { my ($object, $attribute_method, $wanted_value) = @_; if ( call_method($object, $attribute_method) ~~ $wanted_value ) { return 1; } else { return; } } Then I can loop through a hash whose keys are accessor method names and whose values are the values I'm looking for for those attributes. For example, if that hash is called %wanted, I might use code like this to find the object I want: my $found_object; FINDOBJ: foreach my $obj (@list_of_objects) { foreach my $accessor (keys %wanted) { next FINDOBJ unless verify_attribute($obj, $accessor, $wanted{$accessor}); } # All attrs verified $found_object = $obj; last FINDOBJ; } Of course, the only problem is that call_method does not exsit. Or does it? How can I call a method if I have a string containing its name? Or is there a better solution to this whole problem?

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  • Javascript click function

    - by Gordon Carpenter-Thompson
    I've got some code which works fine in IE but unfortunately not in Google Chrome/Firefox. It relies upon calling a click() event on a button from javascript. Reading around it seems that this is an IE specific extension (doh). Is there any way I can do a similar thing in chrome + firefox? Thanks

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  • How can I make the output from tapply() into a data.frame

    - by James Thompson
    I have a data.frame in R that looks like this: score rms template aln_id description 1 -261.410 4.951 2f22A.pdb 2F22A_1 S_00001_0000002_0 2 -231.987 21.813 1wb9A.pdb 1WB9A_4 S_00002_0000002_0 3 -263.722 4.903 2f22A.pdb 2F22A_3 S_00003_0000002_0 4 -269.681 17.732 1wbbA.pdb 1WBBA_6 S_00004_0000002_0 5 -258.621 19.098 1rxqA.pdb 1RXQA_3 S_00005_0000002_0 6 -246.805 6.889 1rxqA.pdb 1RXQA_15 S_00006_0000002_0 7 -281.300 16.262 1wbdA.pdb 1WBDA_11 S_00007_0000002_0 8 -271.666 4.193 2f22A.pdb 2F22A_2 S_00008_0000002_0 9 -277.964 13.066 1wb9A.pdb 1WB9A_5 S_00009_0000002_0 10 -261.024 17.153 1yy9A.pdb 1YY9A_2 S_00001_0000003_0 I can calculate summary statistics on the data.frame like this: > tapply( d$score, d$template, mean ) 1rxqA.pdb 1wb9A.pdb 1wbbA.pdb 1wbdA.pdb 1yy9A.pdb 2f22A.pdb -252.7130 -254.9755 -269.6810 -281.3000 -261.0240 -265.5993 Is there an easy way that I coerce this output back into a data.frame? I'd like for it to have these two columns: d$template mean I love tapply, but right now I'm cutting and pasting the results from tapply into a text file and hacking it up a bit to get the summary statistics that I want with appropriate names. This feels very wrong, and I'd like to do something better!

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  • Statistics Question: Kernel Smoothing in R

    - by James Thompson
    I have data of this form: x y 1 0.19 2 0.26 3 0.40 4 0.58 5 0.59 6 1.24 7 0.68 8 0.60 9 1.12 10 0.80 11 1.20 12 1.17 13 0.39 I'm currently plotting a kernel-smoothed density estimate of the x versus y using this code: smoothed = ksmooth( d$resi, d$score, bandwidth = 6 ) plot( smoothed ) I simply want a plot of the x versus smoothed(y) values, which is ## Heading ## However, the documentation for ksmooth suggests that this isn't the best kernel-smoothing package available: This function is implemented purely for compatibility with S, although it is nowhere near as slow as the S function. Better kernel smoothers are available in other packages. What other kernel smoothers are better can these smoothers be found?

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  • Perl module for parsing natural language time duration specifications (similar to the "at" command)?

    - by Ryan Thompson
    I'm writing a perl script that takes a "duration" option, and I'd like to be able to specify this duration in a fairly flexible manner, as opposed to only taking a single unit (e.g. number of seconds). The UNIX at command implements this kind of behavior, by allowing specifications such as "now + 3 hours + 2 days". For my program, the "now" part is implied, so I just want to parse the stuff after the plus sign. (Note: the at command also parses exact date specifications, but I only want to parse durations.) Is there a perl module for parsing duration specifications like this? I don't need the exact syntax accepted by at, just any reasonable syntax for specifying time durations. Edit: Basically, I want something like DateTime::Format::Flexible for durations instead of dates.

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  • Javascript Replace Child/Loop issue

    - by Charles John Thompson III
    I have this really bizarre issue where I have a forloop that is supposed to replace all divs with the class of "original" to text inputs with a class of "new". When I run the loop, it only replaces every-other div with an input, but if I run the loop to just replace the class of the div and not change the tag to input, it does every single div, and doesn't only do every-other. Here is my loop code, and a link to the live version: live version here function divChange() { var divs = document.getElementsByTagName("div"); for (var i=0; i<divs.length; i++) { if (divs[i].className == 'original') { var textInput = document.createElement('input'); textInput.className = 'new'; textInput.type = 'text'; textInput.value = divs[i].innerHTML; var parent = divs[i].parentNode; parent.replaceChild(textInput, divs[i]); } } }

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  • Centered DIV w/ width dependant on text, buffered by two divs that should fill the containing DIV

    - by Andrew Thompson
    I have been wracking my brains on this seemingly small issue the whole day. My web dev friends are baffled and I could not find a suitable answer in my search of this site and others (though, I could have missed it somewhere along the way). Here's the problem: 3 DIVS within one fixed-width container DIV The center DIV has text that will be different on other sites The center DIV needs to be centered, and no larger than the text it contains. This is what I'd like to end up with The basic HTMl: <div id="container" > <div id="left" ></div> <div id="center" >Text inside center should resize this block</div> <div id="right" ></div> </div> Below, I removed most of the styles I have tried. This CSS currently centers the DIV (if I set it as an inline block), but I need the other divs to fill the left and right space remaining: #container { width:750px; text-align:center; } #left { background-color:#E85355; } #center { background-color:#CDD7D7; display:inline-block; } #right { background-color:#65A8A6; } I've tried floating, no-wrap, overflow, etc. Thanks a million to whomever can offer some help! JSFiddle Link

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  • Saving child collections with NHibernate

    - by Ben
    Hi, I am in the process or learning NHibernate so bare with me. I have an Order class and a Transaction class. Order has a one to many association with transaction. The transaction table in my database has a not null constraint on the OrderId foreign key. Order class: public class Order { public virtual Guid Id { get; set; } public virtual DateTime CreatedOn { get; set; } public virtual decimal Total { get; set; } public virtual ICollection<Transaction> Transactions { get; set; } public Order() { Transactions = new HashSet<Transaction>(); } } Order Mapping: <class name="Order" table="Orders"> <cache usage="read-write"/> <id name="Id"> <generator class="guid"/> </id> <property name="CreatedOn" type="datetime"/> <property name="Total" type="decimal"/> <set name="Transactions" table="Transactions" lazy="false" inverse="true"> <key column="OrderId"/> <one-to-many class="Transaction"/> </set> Transaction Class: public class Transaction { public virtual Guid Id { get; set; } public virtual DateTime ExecutedOn { get; set; } public virtual bool Success { get; set; } public virtual Order Order { get; set; } } Transaction Mapping: <class name="Transaction" table="Transactions"> <cache usage="read-write"/> <id name="Id" column="Id" type="Guid"> <generator class="guid"/> </id> <property name="ExecutedOn" type="datetime"/> <property name="Success" type="bool"/> <many-to-one name="Order" class="Order" column="OrderId" not-null="true"/> Really I don't want a bidirectional association. There is no need for my transaction objects to reference their order object directly (I just need to access the transactions of an order). However, I had to add this so that Order.Transactions is persisted to the database: Repository: public void Update(Order entity) { using (ISession session = NHibernateHelper.OpenSession()) { using (ITransaction transaction = session.BeginTransaction()) { session.Update(entity); foreach (var tx in entity.Transactions) { tx.Order = entity; session.SaveOrUpdate(tx); } transaction.Commit(); } } } My problem is that this will then issue an update for every transaction on the order collection (regardless of whether it has changed or not). What I was trying to get around was having to explicitly save the transaction before saving the order and instead just add the transactions to the order and then save the order: public void Can_add_transaction_to_existing_order() { var orderRepo = new OrderRepository(); var order = orderRepo.GetById(new Guid("aa3b5d04-c5c8-4ad9-9b3e-9ce73e488a9f")); Transaction tx = new Transaction(); tx.ExecutedOn = DateTime.Now; tx.Success = true; order.Transactions.Add(tx); orderRepo.Update(order); } Although I have found quite a few articles covering the set up of a one-to-many association, most of these discuss retrieving of data and not persisting back. Many thanks, Ben

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  • I'm looking for this graph solution

    - by Ben Fransen
    Hello all, Recently I found a pretty graph when I was browsing the adminskins at ThemeForest and in one of the templates I found a really nice, smooth, clean graph. But I've searching arround but so far without luck finding out which solution is used. And example can be found at: http://enstyled.com/adminus/original/page.html The source of this graph looks like: <table class="stats bar" cellpadding="0" cellspacing="0" width="100%"> <thead> <tr> <td>&nbsp;</td> <th scope="col">02.09</th> <th scope="col">03.09</th> <th scope="col">04.09</th> <th scope="col">05.09</th> <th scope="col">06.09</th> <th scope="col">07.09</th> <th scope="col">08.09</th> <th scope="col">09.09</th> <th scope="col">10.09</th> <th scope="col">11.09</th> <th scope="col">12.09</th> <th scope="col">01.10</th> <th scope="col">02.10</th> <th scope="col">03.10</th> </tr> </thead> <tbody> <tr> <th scope="row">Page views</th> <td>1800</td> <td>900</td> <td>700</td> <td>1200</td> <td>600</td> <td>2800</td> <td>3200</td> <td>500</td> <td>2200</td> <td>1000</td> <td>1200</td> <td>700</td> <td>650</td> <td>800</td> </tr> <tr> <th scope="row">Unique visitors</th> <td>1600</td> <td>650</td> <td>550</td> <td>900</td> <td>500</td> <td>2300</td> <td>2700</td> <td>350</td> <td>1700</td> <td>600</td> <td>1000</td> <td>500</td> <td>400</td> <td>700</td> </tr> </tbody> </table> Can someone please tell me which graphingsolution is used here? Thanks in advance, Ben Fransen

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  • MySQL for Beginners Training-on-Demand First Hand Insight

    - by Antoinette O'Sullivan
    The MySQL for Beginners course is THE course to get you started with MySQL providing you a solid foundation in relational databases using MySQL as a learning tool. Oracle University recently released the Training-on-Demand option for this course.  Ben Krug from the MySQL product team is trying out the MySQL for Beginners Training-on-Demand course and reporting on his experience. You can follow Ben on MySQL Support Blogs. The MySQL for Beginners course is available as: Training-on-Demand: Follow streaming video of instructor delivery and perform hands-on exercises as your own pace. You can start training with 24 hours of purchase. Live-Virtual: Attend a live-instructor led class from your own desk. Hundreds of events on the schedule across timezones. In-Class: Travel to an education center to attend this instructor-led class. Some events on the schedule below:  Location  Date  Delivery Language  Warsaw, Poland  24 September 2012  Polish  Dublin, Ireland  15 October 2012  English  London, United Kingdom  11 September 2012  English  Rome, Italy  5 November 2012  Italian  Hamburg, Germany  3 December 2012  German  Lisbon, Portugal  5 November 2012  European Portugese  Amsterdam, Netherlands  10 December 2012  Dutch  Nieuwegein, Netherlands  18 February 2013  Dutch  Nairobi, Kenya  12 November 2012  English  Barcelona, Spain  5 November 2012  Spanish  Madrid, Spain  8 January 2013  Spanish  Latvia, Riga  12 November 2012  Latvian  Petaling Jaya, Malaysia  22 October 2012  English  Ottawa, Toronto and Montreal Canada  17 December 2012  English  Sao Paulo, Brazil  11 September 2012  Brazilian Portugese  Sao Paulo, Brazil  5 November 2012  Brazilian Portugese  For more information on the Authentic MySQL Curriculum, go to the Oracle University Portal - http://oracle.com/education/mysql

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  • Today's Links (6/17/2011)

    - by Bob Rhubart
    Call for Nominations: Oracle Eco-Enterprise Innovation Awards Is your organization using Oracle products to reduce your environmental footprint while reducing costs? If so, submit your nomination for Oracle's Eco-Enterprise Innovation award. These awards will be presented to select customers and their partners who are using any of Oracle's products to not only take an environmental lead, but also to reduce their costs and improve their business efficiencies by using green business practices. Beyond The Data Grid: Coherence, Normalization, Joins, and Linear Scalability | Ben Stopford Ben Stopford presents ODC, a highly distributed in-memory normalized NoSQL datastore designed for scalability, based on normalized data, Snowflake Schema, and Connected Replication pattern. Upgrading ALSB services to OSB | John Chin-a-Woeng John Chin-a-Woeng walks you through the upgrade from Aqualogic Service Bus (ALSB 3.0) to Oracle Service Bus (OSB 10.3). SOA & Middleware: Pinning tasks to a user in BPM 11g | Niall Commiskey Commiskey illustrates a scenario. JDeveloper 11gR2: New option Test WebService in WSDL editor | Lucas Jellema The "Test WebService" button in the WSDL Editor in JDeveloper 11gr2 is "just a little feature addition," says Oracle ACE Director Lucas Jellema. "But it can be quite useful all the same." Enterprise Business Intelligence 11g Seminar with Mark Rittman Oracle ACE Director Mark Rittman conducts a two-day course for Oracle University, in Dublin, IE, July 4-5, 2011. Data Integration Webcast Series Join Oracle experts for a series covering our data integration solutions. You’ll get invaluable information to help boost your data infrastructure so that you can accelerate your business.

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  • Server hard disk read speed and client download speed, is there a connection? [closed]

    - by Mywiki Witwiki
    Ok so a client's download speed is only as fast as a server's upload speed, and vice versa. Based on the answers to this post: Does upload speed depend upon download speed of the server? In other words, the data transfer rate between the two computers is only as fast as the speed of the "bottleneck". Let's pretend the two computers are in two different networks and both have 100Mbps internet connection. Ben wants a copy of a file in Mark's computer hard disk with 30Mbps read speed. Does this mean that Ben can download the file at a speed of around 30Mbps only, despite having an internet connection faster than 30Mbps?

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