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• Why is process not being displayed by TOP

  - by drN

  I am running a Mathematica script (this question probably doesn't fit in Mathematica.SE however) and I know that it generally takes up a lot of RAM and loads up my cores. However, althought pgrep MathKernel is showing a pid, I find that top doesn't show this in the top processes, although I notice that it is taking up about 2.25GB of the 8GB available to me. pmap -x my_process_id total kB 2243132 1907404 1892108 AND ps aux | grep MathKernel dnaneet 20837 12.6 23.3 2234944 1907404 pts/1 Sl 09:23 8:01 /share/apps/mathematica/8.0.4/SystemFiles/Kernel/Binaries/Linux-x86-64/MathKernel -runfirst $TopDirectory="/share/apps/mathematica/8.0.4" -script ./dcm_10micrometer_2x -- ./dcm_10micrometer_2x ps aux shows that the process is taking about 12% (In asterisks) dnaneet 20601 0.0 0.0 68264 1660 pts/1 Ss 09:15 0:00 -bash **dnaneet 20837 12.2 23.3 2234944 1907404 pts/1 Sl 09:23 8:01 /share/apps/mat** dnaneet 21922 0.0 0.0 65604 948 pts/1 R+ 10:29 0:00 ps -aux Did this process fail and is the MathKernel just lingering?

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• Can spell checking be disabled by default on OS X?

  - by Lri

  Is there some way I could disable continuous spell checking or other settings in the substitutions menu by default? System Preferences only has an option to disable autocorrect. defaults write -g CheckSpellingWhileTyping -bool false would be overridden by keys on the property lists of applications. This would only apply to applications that have been used before: #!/bin/bash for d in $(defaults domains | tr -d ,); do osascript -e "app id \"$d\"" > /dev/null 2>&1 [ $? == 1 ] && continue echo $d defaults write $d CheckSpellingWhileTyping -bool false defaults write $d SmartDashes -bool false defaults write $d SmartLinks -bool false defaults write $d SmartQuotes -bool false defaults write $d SmartCopyPaste -bool false defaults write $d TextReplacement -bool false done

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• SSH: one user logs in, other don't

  - by Co Lega

  Some users can ssh correctly, others don't. I have an admin user, which is in wheel. I used vsftpd for allowing FTP. I created a nologin user for FTP. Call this user "ftpuser". Now I want to allow sftp. It allows me to connect using admin user. I remove the nologin, by giving the user a shell via usermod -s /bin/bash ftpuser. It still doesn't allow me to connect from the ftpuser via sftp. The content of /home/ftpuser/.ssh is just the known_hosts file which contains "localhost" entry only. User permissions are (in theory) ok: ls -la /home working (admin) : drwx------ 18 admin admin 4096 Feb 6 15:33 admin non-working(ftpuser): drwx------ 3 ftpuser ftp 4096 Mar 26 15:25 ftpuser I haven't configured anything special on openssh. Does the ftpuser need anything extra than shell to enter via ssh?

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• Weird behaviour/rendering of backspace in Terminal.app when SSHing into zsh using tmux/screen

  - by Nils Riedemann

  Hi there, I just stumbled upon a weird problem. When I SSH into my server (centos, zsh) and I type some stuff and hit backspace It looks like a space - but internally it really deleted the characters. ls -l a Note that the space between land a is actually when I hit backspace. When I now hit return ls -a gets executed. This is only in zsh, in bash it works fine. Hope anyone has an idea what this is all about and how to fix this. Update: Only happens when using tmux/screen

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• using git on DOS command line asks for password - but not when using TortoiseGit or gitBash

  - by Sandy

  I would like to use the DOS command line to enter the command: git clone "git_path.git" myDir It asks me to enter a password which I would like to avoid. I usually use TortoiseGit to do all git related operations. I would like to setup cruisecontrol using ant with a custom git task. Therefore I need to perform git clone on the command line in Windows 7. But it only works using git bash and not DOS. According to other forum entries, I tried to convert the key with puttyGen and put the file id_rsa in c:/Users/myName/.ssh I also added an authorized_keys file but it still asks for a password. Any ideas? Thanks

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• Advanced command line editing for Windows?

  - by Ben Collins

  I'm developer who was "born and bred" on Linux and BSD systems, and I've become accustomed to having advanced tools for the console (posix shells like bash, for example). My career has taken a twist that means I'm working in a Windows environment most of the time, and the console capabilities are really poor by comparison. The traditional windows console environment is a complete joke, and even most of the third party attempts at improving things aren't a lot better. PowerShell is a huge step in the right direction, but the console applications themselves are still way behind where unix has been for 20 years. Does anyone know of a PowerShell console application that supports advanced command line editing like posix shells do? I'm particularly interested in emacs-mode editing, and I'd also like to be able to resize my window to an arbirary size, unlike the native console app that comes with Windows.

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• btrfs won't run from cron

  - by Mikkel

  I'm trying to set up a cron job to create a btrfs subvolume snapshot of my root partition. The command works perfectly if I run it from the command line, but nothing happens at the scheduled cron time. I've tried piping to logger and redirecting stdout/stderr to file, and not only is there no content, the file I'm logging to isn't even created. The cron command I have is as follows: 0 0 * * * /sbin/btrfs subvolume snapshot / "/snapshots/$(date +%Y-%m-%d)" I've tried prefixing it with /bin/bash, but that makes no difference. What am I missing?

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• s3cmd run on command line not on cron

  - by Jonar

  Many have said that the problem is with environment but I still can't seem to solve this problem. BTW I am using Ubuntu 9.10 login as user, then sudo -s using this command: s3cmd put file s3://bucket worked! now here is the simple script intended for testing: #! /bin/bash env >/tmp/cronjob.log s3cmd put file s3://bucket issuing the command crontab -e * * * * * /opt/script 2>&1 | logger Then using tail to syslogs Dec 3 23:22:01 ubuntu CRON[10795]: (root) CMD (/opt/script 2&1 | logger) But by verifying it on s3Fox Organizer, the file is not uploaded. (I tried changing the #! /bin/sh (no effect), putting crons on /etc/crontab (no effect), setting HOME=/home/user (no effect) What are other options to try? Or other ways to debug this problem. Thanks

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• How do i allow users to execute commands via ssh without allocating a psuedo-terminal

  - by Dani El

  I need to allow users to run a limited set of commands. But not to allow them to create interactive sessions. Just like GitHub does. If you try to ssh without a command it greetings you and close the session. I can acquire this by using ForceCommand some-script But getting in some-script i then need to eval user's input. Perhaps any other NoTTY-like option in sshd_config? --- UPDATE --- i'm looking for a pure SSH / Bash solution, not Perl/Python/etc. hacks.

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• Booting ubuntu from usb hdd: GRUB menu not shown

  - by emanemos

  Hello, could anyone help me to boot ubuntu-9.04 from usb hard disk? This disk contains /boot primary partition. During ubuntu installation I used "Advanced" button and asked to install GRUB to the /boot partition. Later I checked whether GRUB files are really present in this partition. They are. However, I get stuck while trying to boot. The boot menu ("ubuntu generic version", "ubuntu recovery mode", etc...) is not shown. Instead I am thrown to GRUB minimal bash-like version. I feel at a loss and have no idea why I am pointed to this minimal version. Can anybody prompt me what to do?

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• What is the best way to make Calculate SHA1 as a context menu option in Mac OS X?

  - by Andrei

  In order to calculate the SHA1 checksum of a downloaded file, I could type /usr/bin/openssl sha1 in Terminal and then drag there the file which I want check. To make it simpler, one could enable a Context Menu item for this action. What is the best way to create such item in Mac OS X 10.6? A detailed answer is appreciated, because I don't have good experience with AppleScript, etc. Step by step Open Automator Create new service Choose to receive selected Files and Folders in Finder Add action Run Shell Script where your bash command is /usr/bin/openssl sha1 "$@" and you pass input as arguments How can I get the output? Preferably in a Growl pop-up or a message window/dialog.

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• CentOS-Like configuration of Vim on Ubuntu

  - by matejkramny

  Whenever I use a CentOS System, there's always a pleasant configuration of vim which mainly does the following: Remembering position of closed files Colour mode (!!!) Bash has colours There's lots more, just not something i can recall on the spot. Then, i go to ubuntu and its all black and white, no nice vim config etc. I have to use Ubuntu, and I hate ubuntu because of this. I know I can all configure it by myself, so my question is: How can I configure the Ubuntu system to behave (aesthetically) like CentOS? PS to future self: I will be stoned to death for asking such a question.

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• When I auto-start Supervisord on boot, the [program:start_gunicorn] don't start

  - by Charlesliam

  The [program:start_gunicorn] is running with no error when I manually start supervisord with this setup. [program:start_gunicorn] command=/env/nafd/bin/gunicorn_start priority=1 autostart=true autorestart=unexpected user=nafd_it redirect_stderr=true stdout_logfile=/env/nafd/logs/gunicorn_supervisor.log stderr_logfile=/env/nafd/logs/gunicorn_supervisor_err.log I successfully run this init script for my supervisord. But when I used auto-start init script for supervisord the gunicorn is not running. ]# service gunicorn status gunicorn: unrecognized service What do I need to do to make the [program:start_gunicorn] run when using auto-start supervisord on boot? Here's my gunicorn config. /env/nafd/bin/gunicorn_start #!/bin/bash NAME="nafd_proj" DJANGODIR=/env/nafd/nafd_proj SOCKFILE=/env/nafd/run/gunicorn.sock NUM_WORKERS=1 DJANGO_SETTINGS_MODULE=nafd_proj.settings DJANGO_WSGI_MODULE=nafd_proj.wsgi echo "Starting $NAME as 'NAFD Web Server'" source /env/nafd/bin/activate export DJANGO_SETTINGS_MODULE=$DJANGO_SETTINGS_MODULE export PYTHONPATH=$DJANGODIR:$PYTHONPATH RUNDIR=$(dirname $SOCKFILE) test -d $RUNDIR || mkdir -p $RUNDIR cd /env/nafd/nafd_proj exec ../bin/gunicorn ${DJANGO_WSGI_MODULE}:application --bind=127.0.0.1:8001 \ --name $NAME \ --workers $NUM_WORKERS \ --log-level=debug \` Any idea is really appreciated.

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• Firewall still blocking port 53 despite listing otherwise?

  - by Tom

  I have 3 nodes with virtually the same iptables rules loaded from a bash script, but one particular node is blocking traffic on port 53 despite listing it's accepting it: $ iptables --list -v Chain INPUT (policy DROP 8886 packets, 657K bytes) pkts bytes target prot opt in out source destination 0 0 ACCEPT all -- lo any anywhere anywhere 2 122 ACCEPT icmp -- any any anywhere anywhere icmp echo-request 20738 5600K ACCEPT all -- any any anywhere anywhere state RELATED,ESTABLISHED 0 0 ACCEPT tcp -- eth1 any anywhere node1.com multiport dports http,smtp 0 0 ACCEPT udp -- eth1 any anywhere ns.node1.com udp dpt:domain 0 0 ACCEPT tcp -- eth1 any anywhere ns.node1.com tcp dpt:domain 0 0 ACCEPT all -- eth0 any node2.backend anywhere 21 1260 ACCEPT all -- eth0 any node3.backend anywhere 0 0 ACCEPT all -- eth0 any node4.backend anywhere Chain FORWARD (policy DROP 0 packets, 0 bytes) pkts bytes target prot opt in out source destination Chain OUTPUT (policy ACCEPT 15804 packets, 26M bytes) pkts bytes target prot opt in out source destination nmap -sV -p 53 ns.node1.com // From remote server Starting Nmap 4.11 ( http://www.insecure.org/nmap/ ) at 2011-02-24 11:44 EST Interesting ports on ns.node1.com (1.2.3.4): PORT STATE SERVICE VERSION 53/tcp filtered domain Nmap finished: 1 IP address (1 host up) scanned in 0.336 seconds Any ideas? Thanks

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• Log with iptalbes which user is delivering email to port 25

  - by Maus

  Because we got blacklisted on CBL I set up the following firewall rules with iptables: #!/bin/bash iptables -A OUTPUT -d 127.0.0.1 -p tcp -m tcp --dport 25 -j ACCEPT iptables -A OUTPUT -p tcp -m tcp --dport 25 -m owner --gid-owner mail -j ACCEPT iptables -A OUTPUT -p tcp -m tcp --dport 25 -m owner --uid-owner root -j ACCEPT iptables -A OUTPUT -p tcp -m tcp --dport 25 -m owner --uid-owner Debian-exim -j ACCEPT iptables -A OUTPUT -p tcp -m limit --limit 15/minute -m tcp --dport 25 -j LOG --log-prefix "LOCAL_DROPPED_SPAM" iptables -A OUTPUT -p tcp -m tcp --dport 25 -j REJECT --reject-with icmp-port-unreachable I'm not able to connect to port 25 from localhost with another user than root or a mail group member - So it seems to work. Still some questions remain: How effective do you rate this rule-set to prevent spam coming from bad PHP-Scripts hosted on the server? Is there a way to block port 25 and 587 within the same statement? Is the usage of /usr/sbin/sendmail also limited or blocked by this rule-set? Is there a way to log the username of all other attempts which try to deliver stuff to port 25?

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• LSB Script: how do i know if something goes wrong?

  - by ianaz

  How do I know if a LSB script fails to load or where do I check the log of the lsbs scripts? I added two scripts with the following command: update-rc.d scriptname defaults And just one launches the things I need. It does not seem to be a script error since if I launch it with /etc/init.d/scriptname it works. This is my script: #!/bin/bash ### BEGIN INIT INFO # Provides: nodes # Required-Start: $remote_fs $syslog # Required-Stop: $remote_fs $syslog # Default-Start: 2 3 4 5 # Default-Stop: 0 1 6 # Short-Description: Starts all node apps # Description: Starts all node apps like AAM, AMT,... ### END INIT INFO echo "Launch Node applications with forever" export PATH=/usr/local/bin:$PATH # Starts the redis server redis-server # Starts AAM forever -o /var/log/AAM.log -e /var/log/AAM.log --spinSleepTime 2000 -m 5 start /var/nodejs/AAM/app.js

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• How can I programmatically renumber pages in a PDF?

  - by Andrew

  As a graduate student, I come across PDFs of articles and book chapters on a daily basis. Sometimes these PDFs are paginated correctly internally (that is, if an article starts on page 67, the PDF starts on page 67 as well; not on page 1). When they aren't, I have to open the file in Acrobat and renumber the pages in the "Page Thumbnails" panel. I would love to be able to automate this whole process with a script (bash, Python, AppleScript, whatever) that lets me pass the first actual page number... something like fixpagination example.pdf 67. However, I cannot find any terminal-based program that can re-paginate PDFs. Neither pdftk nor PyPDF seem to be able to deal with pagination. Are there any scriptable programs that can internally re-paginate PDF files?

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• Apache Web Server character encoding

  - by OBY

  I've recently transferred my webapp from my localhost (LH) to a VPS, and have had hebrew chars-encoding probs since. Whenever I send a request with a heb-char it results in "?????" saved to the DB. My LH config was tomcat6, MySQL, and centOS 6.2, opened to the web. In the VPS env I'm behind an Apache Web Server, and the rest is quite the same (though I haven't done anything to its installation). Please note I already have had this problem before, on my LH when the request was sent from IE/chrome (not FF!). The solution was to apply a filter on the the context and change the char-type to UTF-8. My webapp content char-encode is utf-8, MySql server set to utf8 using charset utf8;, and my centOS set to iw_IL.UTF8 using export LANG=iw_IL.UTF8. When I use locale the bash output seems to be set correctly. Any suggestions?

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• Linux program unable to access files in group

  - by user1064665

  I'm having trouble configuring things on linux so that a program can access certain files. Let's call it pgm A. It has uid uA and gid gA. In addition, uid uA is listed in /etc/group as a member of group gX. The problem is that pgm A cannot access files for which the uid is root and the gid is gX, but only when pgm A is called from another program, pgm B, which also runs as user uA. If I su as user uA and run pgm A from bash, it has no problem accessing files in group gX. But if another program, pgm B, which also runs as user uA, forks and execs pgm A, pgm A cannot access the files. I've verified that pgm A is indeed running as user uA, group gA, when launched from pgm B. So, if uA is a member of group gX, why can't the program access files which are readable by group gX? It's as if the operating system is ignoring the fact that user uA is also in group gX.

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• Batch converting video from avc1 to xvid

  - by Tommy Brunn

  I need a way to batch convert 720p video files from avc1 to xvid in Ubuntu 10.04. I'm not terribly concerned about file size, but I do wish to retain the picture quality as much as possible. I believe the audio is encoded as aac, which is fine for my purposes. What would be the best and easiest way to do this? I've tried using Handbrake. During my first attempt, I had it using ffmpeg to convert to MPEG-4, but that just gave me a super-low quality video at twice the file size. Trying h.264 now, so we'll see how that works out. But just in case it doesn't pan out so well, what other ways do you recommend? I was thinking I'd write a bash script to reencode the files one by one, but the problem is that I have very little knowledge about codecs and containers and whatnot - so I wouldn't know what parameters I would pass ffmpeg/mencoder.

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• Desktop directory disappears in gnome-terminal, then appears again, but all files in it are deleted

  - by Ingen

  I am able to see my Desktop and with all its various links and files. But in the terminal when I try to access the Desktop directory: cd ~/Desktop I get: bash: cd: /home/administrator/Desktop: No such file or directory Then I find I am unable to access any of the files on the Desktop when I click on them although the file icons are there. Then the icons disappear after my clicking on them. Then I am able to access the Desktop directory in the terminal but the directory is empty i.e. all the files/folders have been deleted. What's going on? How can I fix this?

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• Creating user accounts in Amazon EC2

  - by Tvanover

  I am putting together a test environment using Amazon's EC2 for me and some friends to collaborate on a project. I am not a server guy but I do know my way around a bash prompt and have done some work on ubuntu before. I am using Amazon Linux AMI i386 EBS and have gotten apache and php running. Now I need to create the user accounts my friends and I will use to upload files (sftp) and work on the project (ssh). How should I go about this? Should I just use adduser and configure it like normal? Or should I use the AWS IAM groups?

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• connection to apache server switches sockets connection

  - by Newben

  I have just post a question but I post an other one because the problem is not the one I had in thought when asking the latter. So, I am running some rails app on osx, when I run rails s, everything works fine. If I shut down the apache server (mamp) and if I run rails s again, I have this message Can't connect to local MySQL server through socket '/Applications/MAMP/tmp/mysql/mysql.sock', which for sure is normal. For info, my mamp server is running, and the connection must pass through /Applications/MAMP/Library/bin/mysql, so I aliased it by setting in my bash profile : alias mysql="/Applications/MAMP/Library/bin/mysql" Now, when I launch a rails generate command type, I get this message : /$root/vendor/bundle/ruby/2.0.0/gems/mysql2-0.3.11/lib/mysql2/client.rb:44:in `connect': Can't connect to local MySQL server through socket '/tmp/mysql.sock' (2) (Mysql2::Error) So how it can be ?

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• Permission denied when trying to execute a binary burned to a CD-R

  - by user16654

  On an Ubuntu 9.10 (Karmic Koala) machine, I burned a CD from the command prompt using: cdrecord -v speed=16 dev=0,1,0 /FPS.iso The CD now contains an executable and some files. I tested the CD by loading it onto another machine (Red Hat 5.3) and when I try to run the program I get the following message: bash: ./FPS1_1: Permission denied I can open other files like text documents (the executable also comes with shared libraries). I realized I had burned the CD as root so I burned another one as another user but I still have the same problem. How can I remove this permission or what is the problem? P.S. the image was in / if that helps

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• Using sudo /etc/init.d/httpd start complains for log file rights

  - by SCO

  I created a custom log directory with the root account, and chmoded it to 777 teporarily. ls -la /var/mylogs/log/ total 16 drwxrwxrwx 2 root root 4096 Jun 24 06:27 . drwxr-xr-x 5 root root 4096 Jun 24 06:25 .. When I try to start the service from a user (lets say "myuser", which is in the sudoers files as myuser ALL=(ALL) ALL), it fails because of the permissions : sudo /etc/init.d/httpd start Starting httpd: (13)Permission denied: httpd: could not open error log file /var/mylogs/log/httpd_error.log. Unable to open logs However, the following is successfull : sudo bash /etc/init.d/http start So I guess these two methods are not equivalent, although to me doing sudo was the same than logging into the root account and issuing the commands. Any clue ? Thank you !

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