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  • How do you convert a parent-child (adjacency) table to a nested set using PHP and MySQL?

    - by mrbinky3000
    I've spent the last few hours trying to find the solution to this question online. I've found plenty of examples on how to convert from nested set to adjacency... but few that go the other way around. The examples I have found either don't work or use MySQL procedures. Unfortunately, I can't use procedures for this project. I need a pure PHP solution. I have a table that uses the adjacency model below: id parent_id category 1 0 ROOT_NODE 2 1 Books 3 1 CD's 4 1 Magazines 5 2 Books/Hardcover 6 2 Books/Large Format 7 4 Magazines/Vintage And I would like to convert it to a Nested Set table below: id left right category 1 1 14 Root Node 2 2 7 Books 3 3 4 Books/Hardcover 4 5 6 Books/Large Format 5 8 9 CD's 6 10 13 Magazines 7 11 12 Magazines/Vintage Here is an image of what I need: I have a function, based on the pseudo code from this forum post (http://www.sitepoint.com/forums/showthread.php?t=320444) but it doesn't work. I get multiple rows that have the same value for left. This should not happen. <?php /** -- -- Table structure for table `adjacent_table` -- CREATE TABLE IF NOT EXISTS `adjacent_table` ( `id` int(11) NOT NULL AUTO_INCREMENT, `father_id` int(11) DEFAULT NULL, `category` varchar(128) DEFAULT NULL, PRIMARY KEY (`id`) ) ENGINE=MyISAM DEFAULT CHARSET=latin1 AUTO_INCREMENT=8 ; -- -- Dumping data for table `adjacent_table` -- INSERT INTO `adjacent_table` (`id`, `father_id`, `category`) VALUES (1, 0, 'ROOT'), (2, 1, 'Books'), (3, 1, 'CD''s'), (4, 1, 'Magazines'), (5, 2, 'Hard Cover'), (6, 2, 'Large Format'), (7, 4, 'Vintage'); -- -- Table structure for table `nested_table` -- CREATE TABLE IF NOT EXISTS `nested_table` ( `id` int(11) NOT NULL AUTO_INCREMENT, `lft` int(11) DEFAULT NULL, `rgt` int(11) DEFAULT NULL, `category` varchar(128) DEFAULT NULL, PRIMARY KEY (`id`) ) ENGINE=MyISAM DEFAULT CHARSET=latin1 AUTO_INCREMENT=1 ; */ mysql_connect('localhost','USER','PASSWORD') or die(mysql_error()); mysql_select_db('DATABASE') or die(mysql_error()); adjacent_to_nested(0); /** * adjacent_to_nested * * Reads a "adjacent model" table and converts it to a "Nested Set" table. * @param integer $i_id Should be the id of the "root node" in the adjacent table; * @param integer $i_left Should only be used on recursive calls. Holds the current value for lft */ function adjacent_to_nested($i_id, $i_left = 0) { // the right value of this node is the left value + 1 $i_right = $i_left + 1; // get all children of this node $a_children = get_source_children($i_id); foreach ($a_children as $a) { // recursive execution of this function for each child of this node // $i_right is the current right value, which is incremented by the // import_from_dc_link_category method $i_right = adjacent_to_nested($a['id'], $i_right); // insert stuff into the our new "Nested Sets" table $s_query = " INSERT INTO `nested_table` (`id`, `lft`, `rgt`, `category`) VALUES( NULL, '".$i_left."', '".$i_right."', '".mysql_real_escape_string($a['category'])."' ) "; if (!mysql_query($s_query)) { echo "<pre>$s_query</pre>\n"; throw new Exception(mysql_error()); } echo "<p>$s_query</p>\n"; // get the newly created row id $i_new_nested_id = mysql_insert_id(); } return $i_right + 1; } /** * get_source_children * * Examines the "adjacent" table and finds all the immediate children of a node * @param integer $i_id The unique id for a node in the adjacent_table table * @return array Returns an array of results or an empty array if no results. */ function get_source_children($i_id) { $a_return = array(); $s_query = "SELECT * FROM `adjacent_table` WHERE `father_id` = '".$i_id."'"; if (!$i_result = mysql_query($s_query)) { echo "<pre>$s_query</pre>\n"; throw new Exception(mysql_error()); } if (mysql_num_rows($i_result) > 0) { while($a = mysql_fetch_assoc($i_result)) { $a_return[] = $a; } } return $a_return; } ?> This is the output of the above script. INSERT INTO nested_table (id, lft, rgt, category) VALUES( NULL, '2', '5', 'Hard Cover' ) INSERT INTO nested_table (id, lft, rgt, category) VALUES( NULL, '2', '7', 'Large Format' ) INSERT INTO nested_table (id, lft, rgt, category) VALUES( NULL, '1', '8', 'Books' ) INSERT INTO nested_table (id, lft, rgt, category) VALUES( NULL, '1', '10', 'CD\'s' ) INSERT INTO nested_table (id, lft, rgt, category) VALUES( NULL, '10', '13', 'Vintage' ) INSERT INTO nested_table (id, lft, rgt, category) VALUES( NULL, '1', '14', 'Magazines' ) INSERT INTO nested_table (id, lft, rgt, category) VALUES( NULL, '0', '15', 'ROOT' ) As you can see, there are multiple rows sharing the lft value of "1" same goes for "2" In a nested-set, the values for left and right must be unique. Here is an example of how to manually number the left and right ID's in a nested set: UPDATE - PROBLEM SOLVED First off, I had mistakenly believed that the source table (the one in adjacent-lists format) needed to be altered to include a source node. This is not the case. Secondly, I found a cached page on BING (of all places) with a class that does the trick. I've altered it for PHP5 and converted the original author's mysql related bits to basic PHP. He was using some DB class. You can convert them to your own database abstraction class later if you want. Obviously, if your "source table" has other columns that you want to move to the nested set table, you will have to adjust the write method in the class below. Hopefully this will save someone else from the same problems in the future. <?php /** -- -- Table structure for table `adjacent_table` -- DROP TABLE IF EXISTS `adjacent_table`; CREATE TABLE IF NOT EXISTS `adjacent_table` ( `id` int(11) NOT NULL AUTO_INCREMENT, `father_id` int(11) DEFAULT NULL, `category` varchar(128) DEFAULT NULL, PRIMARY KEY (`id`) ) ENGINE=MyISAM DEFAULT CHARSET=latin1 AUTO_INCREMENT=8 ; -- -- Dumping data for table `adjacent_table` -- INSERT INTO `adjacent_table` (`id`, `father_id`, `category`) VALUES (1, 0, 'Books'), (2, 0, 'CD''s'), (3, 0, 'Magazines'), (4, 1, 'Hard Cover'), (5, 1, 'Large Format'), (6, 3, 'Vintage'); -- -- Table structure for table `nested_table` -- DROP TABLE IF EXISTS `nested_table`; CREATE TABLE IF NOT EXISTS `nested_table` ( `lft` int(11) NOT NULL DEFAULT '0', `rgt` int(11) DEFAULT NULL, `id` int(11) DEFAULT NULL, `category` varchar(128) DEFAULT NULL, PRIMARY KEY (`lft`), UNIQUE KEY `id` (`id`), UNIQUE KEY `rgt` (`rgt`) ) ENGINE=MyISAM DEFAULT CHARSET=latin1; */ /** * @class tree_transformer * @author Paul Houle, Matthew Toledo * @created 2008-11-04 * @url http://gen5.info/q/2008/11/04/nested-sets-php-verb-objects-and-noun-objects/ */ class tree_transformer { private $i_count; private $a_link; public function __construct($a_link) { if(!is_array($a_link)) throw new Exception("First parameter should be an array. Instead, it was type '".gettype($a_link)."'"); $this->i_count = 1; $this->a_link= $a_link; } public function traverse($i_id) { $i_lft = $this->i_count; $this->i_count++; $a_kid = $this->get_children($i_id); if ($a_kid) { foreach($a_kid as $a_child) { $this->traverse($a_child); } } $i_rgt=$this->i_count; $this->i_count++; $this->write($i_lft,$i_rgt,$i_id); } private function get_children($i_id) { return $this->a_link[$i_id]; } private function write($i_lft,$i_rgt,$i_id) { // fetch the source column $s_query = "SELECT * FROM `adjacent_table` WHERE `id` = '".$i_id."'"; if (!$i_result = mysql_query($s_query)) { echo "<pre>$s_query</pre>\n"; throw new Exception(mysql_error()); } $a_source = array(); if (mysql_num_rows($i_result)) { $a_source = mysql_fetch_assoc($i_result); } // root node? label it unless already labeled in source table if (1 == $i_lft && empty($a_source['category'])) { $a_source['category'] = 'ROOT'; } // insert into the new nested tree table // use mysql_real_escape_string because one value "CD's" has a single ' $s_query = " INSERT INTO `nested_table` (`id`,`lft`,`rgt`,`category`) VALUES ( '".$i_id."', '".$i_lft."', '".$i_rgt."', '".mysql_real_escape_string($a_source['category'])."' ) "; if (!$i_result = mysql_query($s_query)) { echo "<pre>$s_query</pre>\n"; throw new Exception(mysql_error()); } else { // success: provide feedback echo "<p>$s_query</p>\n"; } } } mysql_connect('localhost','USER','PASSWORD') or die(mysql_error()); mysql_select_db('DATABASE') or die(mysql_error()); // build a complete copy of the adjacency table in ram $s_query = "SELECT `id`,`father_id` FROM `adjacent_table`"; $i_result = mysql_query($s_query); $a_rows = array(); while ($a_rows[] = mysql_fetch_assoc($i_result)); $a_link = array(); foreach($a_rows as $a_row) { $i_father_id = $a_row['father_id']; $i_child_id = $a_row['id']; if (!array_key_exists($i_father_id,$a_link)) { $a_link[$i_father_id]=array(); } $a_link[$i_father_id][]=$i_child_id; } $o_tree_transformer = new tree_transformer($a_link); $o_tree_transformer->traverse(0); ?>

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  • MySQL on Linux out of memory

    - by Sunrays
    OS: Redhat Enterprise Linux Server Release 5.3 (Tikanga) Architecture: Intel Xeon 64Bit MySQL Server 5.5.20 Enterprise Server advanced edition. Application: Liferay. My database size is 200MB. RAM is 64GB. The memory consumption increases gradually and we run out of memory. Then only rebooting releases all the memory, but then process of memory consumption starts again and reaches 63-64GB in less than a day. Parameters detail: key_buffer_size=16M innodb_buffer_pool_size=3GB inndb_buffer_pool_instances=3 max_connections=1000 innodb_flush_method=O_DIRECT innodb_change_buffering=inserts read_buffer_size=2M read_rnd_buffer_size=256K It's a serious production server issue that I am facing. What could be the reason behind this and how to resolve. This is the report of 2pm today, after Linux was rebooted yesterday @ around 10pm. Output of free -m total used free shared buffers cached Mem: 64455 22053 42402 0 1544 1164 -/+ buffers/cache: 19343 45112 Swap: 74998 0 74998 Output of vmstat 2 5 procs -----------memory---------- ---swap-- -----io---- --system-- -----cpu------ r b swpd free buff cache si so bi bo in cs us sy id wa st 0 0 0 43423976 1583700 1086616 0 0 1 173 22 27 1 1 98 0 0 2 0 0 43280200 1583712 1228636 0 0 0 146 1265 491 2 2 96 1 0 0 0 0 43421940 1583724 1087160 0 0 0 138 1469 738 2 1 97 0 0 1 0 0 43422604 1583728 1086736 0 0 0 5816 1615 934 1 1 97 0 0 0 0 0 43422372 1583732 1086752 0 0 0 2784 1323 545 2 1 97 0 0 Output of top -n 3 -b top - 14:16:22 up 16:32, 5 users, load average: 0.79, 0.77, 0.93 Tasks: 345 total, 1 running, 344 sleeping, 0 stopped, 0 zombie Cpu(s): 1.0%us, 0.9%sy, 0.0%ni, 98.1%id, 0.1%wa, 0.0%hi, 0.0%si, 0.0%st Mem: 66002772k total, 22656292k used, 43346480k free, 1582152k buffers Swap: 76798724k total, 0k used, 76798724k free, 1163616k cached PID USER PR NI VIRT RES SHR S %CPU %MEM TIME+ COMMAND 6434 mysql 15 0 4095m 841m 5500 S 113.5 1.3 426:53.69 mysqld 1 root 15 0 10344 680 572 S 0.0 0.0 0:03.09 init 2 root RT -5 0 0 0 S 0.0 0.0 0:00.01 migration/0 3 root 34 19 0 0 0 S 0.0 0.0 0:00.00 ksoftirqd/0 4 root RT -5 0 0 0 S 0.0 0.0 0:00.00 watchdog/0 5 root RT -5 0 0 0 S 0.0 0.0 0:00.01 migration/1 6 root 34 19 0 0 0 S 0.0 0.0 0:00.00 ksoftirqd/1 7 root RT -5 0 0 0 S 0.0 0.0 0:00.00 watchdog/1 8 root RT -5 0 0 0 S 0.0 0.0 0:00.00 migration/2 9 root 34 19 0 0 0 S 0.0 0.0 0:00.00 ksoftirqd/2 10 root RT -5 0 0 0 S 0.0 0.0 0:00.00 watchdog/2 11 root RT -5 0 0 0 S 0.0 0.0 0:00.00 migration/3 12 root 34 19 0 0 0 S 0.0 0.0 0:00.00 ksoftirqd/3 13 root RT -5 0 0 0 S 0.0 0.0 0:00.00 watchdog/3 14 root RT -5 0 0 0 S 0.0 0.0 0:00.00 migration/4 15 root 34 19 0 0 0 S 0.0 0.0 0:00.00 ksoftirqd/4 16 root RT -5 0 0 0 S 0.0 0.0 0:00.00 watchdog/4 17 root RT -5 0 0 0 S 0.0 0.0 0:00.00 migration/5 18 root 34 19 0 0 0 S 0.0 0.0 0:00.00 ksoftirqd/5 19 root RT -5 0 0 0 S 0.0 0.0 0:00.00 watchdog/5 20 root RT -5 0 0 0 S 0.0 0.0 0:00.00 migration/6 21 root 34 19 0 0 0 S 0.0 0.0 0:00.00 ksoftirqd/6 22 root RT -5 0 0 0 S 0.0 0.0 0:00.00 watchdog/6 23 root RT -5 0 0 0 S 0.0 0.0 0:00.00 migration/7 24 root 34 19 0 0 0 S 0.0 0.0 0:00.00 ksoftirqd/7 25 root RT -5 0 0 0 S 0.0 0.0 0:00.00 watchdog/7 26 root RT -5 0 0 0 S 0.0 0.0 0:00.00 migration/8 27 root 34 19 0 0 0 S 0.0 0.0 0:00.00 ksoftirqd/8 28 root RT -5 0 0 0 S 0.0 0.0 0:00.00 watchdog/8 29 root RT -5 0 0 0 S 0.0 0.0 0:00.00 migration/9 30 root 34 19 0 0 0 S 0.0 0.0 0:00.00 ksoftirqd/9 31 root RT -5 0 0 0 S 0.0 0.0 0:00.00 watchdog/9 32 root RT -5 0 0 0 S 0.0 0.0 0:00.00 migration/10 33 root 34 19 0 0 0 S 0.0 0.0 0:00.00 ksoftirqd/10 34 root RT -5 0 0 0 S 0.0 0.0 0:00.00 watchdog/10 35 root RT -5 0 0 0 S 0.0 0.0 0:00.00 migration/11 36 root 34 19 0 0 0 S 0.0 0.0 0:00.00 ksoftirqd/11 37 root RT -5 0 0 0 S 0.0 0.0 0:00.00 watchdog/11 38 root RT -5 0 0 0 S 0.0 0.0 0:00.00 migration/12 39 root 34 19 0 0 0 S 0.0 0.0 0:00.00 ksoftirqd/12 40 root RT -5 0 0 0 S 0.0 0.0 0:00.00 watchdog/12 41 root RT -5 0 0 0 S 0.0 0.0 0:00.00 migration/13 42 root 34 19 0 0 0 S 0.0 0.0 0:00.00 ksoftirqd/13 43 root RT -5 0 0 0 S 0.0 0.0 0:00.00 watchdog/13 44 root RT -5 0 0 0 S 0.0 0.0 0:00.00 migration/14 45 root 34 19 0 0 0 S 0.0 0.0 0:00.00 ksoftirqd/14 46 root RT -5 0 0 0 S 0.0 0.0 0:00.00 watchdog/14 47 root RT -5 0 0 0 S 0.0 0.0 0:00.00 migration/15 48 root 34 19 0 0 0 S 0.0 0.0 0:00.01 ksoftirqd/15 49 root RT -5 0 0 0 S 0.0 0.0 0:00.00 watchdog/15 50 root RT -5 0 0 0 S 0.0 0.0 0:00.00 migration/16 51 root 34 19 0 0 0 S 0.0 0.0 0:00.00 ksoftirqd/16 52 root RT -5 0 0 0 S 0.0 0.0 0:00.00 watchdog/16 53 root RT -5 0 0 0 S 0.0 0.0 0:00.00 migration/17 54 root 34 19 0 0 0 S 0.0 0.0 0:00.00 ksoftirqd/17 55 root RT -5 0 0 0 S 0.0 0.0 0:00.00 watchdog/17 56 root RT -5 0 0 0 S 0.0 0.0 0:00.00 migration/18 57 root 34 19 0 0 0 S 0.0 0.0 0:00.00 ksoftirqd/18 58 root RT -5 0 0 0 S 0.0 0.0 0:00.00 watchdog/18 59 root RT -5 0 0 0 S 0.0 0.0 0:00.00 migration/19 60 root 34 19 0 0 0 S 0.0 0.0 0:00.00 ksoftirqd/19 61 root RT -5 0 0 0 S 0.0 0.0 0:00.00 watchdog/19 62 root RT -5 0 0 0 S 0.0 0.0 0:00.00 migration/20 63 root 34 19 0 0 0 S 0.0 0.0 0:00.00 ksoftirqd/20 64 root RT -5 0 0 0 S 0.0 0.0 0:00.00 watchdog/20 65 root RT -5 0 0 0 S 0.0 0.0 0:00.00 migration/21 66 root 34 19 0 0 0 S 0.0 0.0 0:00.00 ksoftirqd/21 67 root RT -5 0 0 0 S 0.0 0.0 0:00.00 watchdog/21 68 root RT -5 0 0 0 S 0.0 0.0 0:00.00 migration/22 69 root 34 19 0 0 0 S 0.0 0.0 0:00.00 ksoftirqd/22 70 root RT -5 0 0 0 S 0.0 0.0 0:00.00 watchdog/22 71 root RT -5 0 0 0 S 0.0 0.0 0:00.00 migration/23 72 root 34 19 0 0 0 S 0.0 0.0 0:00.00 ksoftirqd/23 73 root RT -5 0 0 0 S 0.0 0.0 0:00.00 watchdog/23 74 root 10 -5 0 0 0 S 0.0 0.0 0:00.02 events/0 75 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 events/1 76 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 events/2 77 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 events/3 78 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 events/4 79 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 events/5 80 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 events/6 81 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 events/7 82 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 events/8 83 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 events/9 84 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 events/10 85 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 events/11 86 root 10 -5 0 0 0 S 0.0 0.0 0:00.01 events/12 87 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 events/13 88 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 events/14 89 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 events/15 90 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 events/16 91 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 events/17 92 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 events/18 93 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 events/19 94 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 events/20 95 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 events/21 96 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 events/22 97 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 events/23 98 root 10 -5 0 0 0 S 0.0 0.0 0:00.01 khelper 615 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 kthread 643 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 kblockd/0 644 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 kblockd/1 645 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 kblockd/2 646 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 kblockd/3 647 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 kblockd/4 648 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 kblockd/5 649 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 kblockd/6 650 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 kblockd/7 651 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 kblockd/8 652 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 kblockd/9 653 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 kblockd/10 654 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 kblockd/11 655 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 kblockd/12 656 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 kblockd/13 657 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 kblockd/14 658 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 kblockd/15 659 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 kblockd/16 660 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 kblockd/17 661 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 kblockd/18 662 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 kblockd/19 663 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 kblockd/20 664 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 kblockd/21 665 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 kblockd/22 666 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 kblockd/23 667 root 17 -5 0 0 0 S 0.0 0.0 0:00.00 kacpid 840 root 17 -5 0 0 0 S 0.0 0.0 0:00.00 cqueue/0 841 root 18 -5 0 0 0 S 0.0 0.0 0:00.00 cqueue/1 842 root 19 -5 0 0 0 S 0.0 0.0 0:00.00 cqueue/2 843 root 20 -5 0 0 0 S 0.0 0.0 0:00.00 cqueue/3 844 root 20 -5 0 0 0 S 0.0 0.0 0:00.00 cqueue/4 845 root 20 -5 0 0 0 S 0.0 0.0 0:00.00 cqueue/5 846 root 20 -5 0 0 0 S 0.0 0.0 0:00.00 cqueue/6 847 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 cqueue/7 848 root 12 -5 0 0 0 S 0.0 0.0 0:00.00 cqueue/8 849 root 13 -5 0 0 0 S 0.0 0.0 0:00.00 cqueue/9 850 root 13 -5 0 0 0 S 0.0 0.0 0:00.00 cqueue/10 851 root 13 -5 0 0 0 S 0.0 0.0 0:00.00 cqueue/11 852 root 15 -5 0 0 0 S 0.0 0.0 0:00.00 cqueue/12 853 root 16 -5 0 0 0 S 0.0 0.0 0:00.00 cqueue/13 854 root 17 -5 0 0 0 S 0.0 0.0 0:00.00 cqueue/14 855 root 18 -5 0 0 0 S 0.0 0.0 0:00.00 cqueue/15 856 root 19 -5 0 0 0 S 0.0 0.0 0:00.00 cqueue/16 857 root 19 -5 0 0 0 S 0.0 0.0 0:00.00 cqueue/17 858 root 19 -5 0 0 0 S 0.0 0.0 0:00.00 cqueue/18 859 root 19 -5 0 0 0 S 0.0 0.0 0:00.00 cqueue/19 860 root 19 -5 0 0 0 S 0.0 0.0 0:00.00 cqueue/20 861 root 19 -5 0 0 0 S 0.0 0.0 0:00.00 cqueue/21 862 root 19 -5 0 0 0 S 0.0 0.0 0:00.00 cqueue/22 863 root 19 -5 0 0 0 S 0.0 0.0 0:00.00 cqueue/23 866 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 khubd 868 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 kseriod 1118 root 23 0 0 0 0 S 0.0 0.0 0:00.00 pdflush 1119 root 15 0 0 0 0 S 0.0 0.0 0:00.11 pdflush 1120 root 19 -5 0 0 0 S 0.0 0.0 0:00.00 kswapd0 1121 root 19 -5 0 0 0 S 0.0 0.0 0:00.00 kswapd1 1122 root 19 -5 0 0 0 S 0.0 0.0 0:00.00 aio/0 1123 root 19 -5 0 0 0 S 0.0 0.0 0:00.00 aio/1 1124 root 19 -5 0 0 0 S 0.0 0.0 0:00.00 aio/2 1125 root 20 -5 0 0 0 S 0.0 0.0 0:00.00 aio/3 1126 root 20 -5 0 0 0 S 0.0 0.0 0:00.00 aio/4 1127 root 20 -5 0 0 0 S 0.0 0.0 0:00.00 aio/5 1128 root 20 -5 0 0 0 S 0.0 0.0 0:00.00 aio/6 1129 root 20 -5 0 0 0 S 0.0 0.0 0:00.00 aio/7 1130 root 20 -5 0 0 0 S 0.0 0.0 0:00.00 aio/8 1131 root 20 -5 0 0 0 S 0.0 0.0 0:00.00 aio/9 1132 root 20 -5 0 0 0 S 0.0 0.0 0:00.00 aio/10 1133 root 20 -5 0 0 0 S 0.0 0.0 0:00.00 aio/11 1134 root 20 -5 0 0 0 S 0.0 0.0 0:00.00 aio/12 1135 root 20 -5 0 0 0 S 0.0 0.0 0:00.00 aio/13 1136 root 20 -5 0 0 0 S 0.0 0.0 0:00.00 aio/14 1137 root 20 -5 0 0 0 S 0.0 0.0 0:00.00 aio/15 1138 root 20 -5 0 0 0 S 0.0 0.0 0:00.00 aio/16 1139 root 20 -5 0 0 0 S 0.0 0.0 0:00.00 aio/17 1140 root 20 -5 0 0 0 S 0.0 0.0 0:00.00 aio/18 1141 root 20 -5 0 0 0 S 0.0 0.0 0:00.00 aio/19 1142 root 20 -5 0 0 0 S 0.0 0.0 0:00.00 aio/20 1143 root 20 -5 0 0 0 S 0.0 0.0 0:00.00 aio/21 1144 root 20 -5 0 0 0 S 0.0 0.0 0:00.00 aio/22 1145 root 20 -5 0 0 0 S 0.0 0.0 0:00.00 aio/23 1308 root 11 -5 0 0 0 S 0.0 0.0 0:00.00 kpsmoused 1566 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 ata/0 1567 root 10 -5 0 0 0 S 0.0 0.0 0:00.27 ata/1 1568 root 10 -5 0 0 0 S 0.0 0.0 0:02.39 ata/2 1569 root 10 -5 0 0 0 S 0.0 0.0 0:00.07 ata/3 1570 root 10 -5 0 0 0 S 0.0 0.0 0:00.72 ata/4 1571 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 ata/5 1572 root 10 -5 0 0 0 S 0.0 0.0 0:00.15 ata/6 1573 root 10 -5 0 0 0 S 0.0 0.0 0:00.07 ata/7 1574 root 10 -5 0 0 0 S 0.0 0.0 0:00.06 ata/8 1575 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 ata/9 1576 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 ata/10 1577 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 ata/11 1578 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 ata/12 1579 root 10 -5 0 0 0 S 0.0 0.0 0:00.14 ata/13 1580 root 10 -5 0 0 0 S 0.0 0.0 0:01.56 ata/14 1581 root 10 -5 0 0 0 S 0.0 0.0 0:00.04 ata/15 1582 root 10 -5 0 0 0 S 0.0 0.0 0:00.40 ata/16 1583 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 ata/17 1584 root 10 -5 0 0 0 S 0.0 0.0 0:00.11 ata/18 1585 root 10 -5 0 0 0 S 0.0 0.0 0:00.03 ata/19 1586 root 10 -5 0 0 0 S 0.0 0.0 0:00.02 ata/20 1587 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 ata/21 1588 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 ata/22 1589 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 ata/23 1590 root 13 -5 0 0 0 S 0.0 0.0 0:00.00 ata_aux 1616 root 10 -5 0 0 0 S 0.0 0.0 0:17.20 scsi_eh_0 1617 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 scsi_eh_1 1668 root 11 -5 0 0 0 S 0.0 0.0 0:00.00 scsi_eh_2 1669 root 0 -20 0 0 0 S 0.0 0.0 0:00.00 qla2xxx_2_dpc 1670 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 scsi_wq_2 1671 root 11 -5 0 0 0 S 0.0 0.0 0:00.00 fc_wq_2 1672 root 12 -5 0 0 0 S 0.0 0.0 0:00.00 fc_dl_2 1673 root 12 -5 0 0 0 S 0.0 0.0 0:00.00 scsi_eh_3 1674 root 0 -20 0 0 0 S 0.0 0.0 0:00.00 qla2xxx_3_dpc 1675 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 scsi_wq_3 1676 root 11 -5 0 0 0 S 0.0 0.0 0:00.00 fc_wq_3 1677 root 12 -5 0 0 0 S 0.0 0.0 0:00.00 fc_dl_3 1728 root 12 -5 0 0 0 S 0.0 0.0 0:00.00 kstriped 1829 root 10 -5 0 0 0 S 0.0 0.0 1:09.14 kjournald 1857 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 kauditd 1891 root 11 -4 13008 1188 388 S 0.0 0.0 0:00.40 udevd 4555 root 11 -5 0 0 0 S 0.0 0.0 0:00.00 kmpathd/0 4556 root 13 -5 0 0 0 S 0.0 0.0 0:00.00 kmpathd/1 4557 root 13 -5 0 0 0 S 0.0 0.0 0:00.00 kmpathd/2 4558 root 14 -5 0 0 0 S 0.0 0.0 0:00.00 kmpathd/3 4559 root 15 -5 0 0 0 S 0.0 0.0 0:00.00 kmpathd/4 4560 root 16 -5 0 0 0 S 0.0 0.0 0:00.00 kmpathd/5 4561 root 16 -5 0 0 0 S 0.0 0.0 0:00.00 kmpathd/6 4562 root 17 -5 0 0 0 S 0.0 0.0 0:00.00 kmpathd/7 4563 root 18 -5 0 0 0 S 0.0 0.0 0:00.00 kmpathd/8 4564 root 19 -5 0 0 0 S 0.0 0.0 0:00.00 kmpathd/9 4565 root 20 -5 0 0 0 S 0.0 0.0 0:00.00 kmpathd/10 4566 root 20 -5 0 0 0 S 0.0 0.0 0:00.00 kmpathd/11 4567 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 kmpathd/12 4568 root 13 -5 0 0 0 S 0.0 0.0 0:00.00 kmpathd/13 4569 root 13 -5 0 0 0 S 0.0 0.0 0:00.00 kmpathd/14 4570 root 13 -5 0 0 0 S 0.0 0.0 0:00.00 kmpathd/15 4571 root 14 -5 0 0 0 S 0.0 0.0 0:00.00 kmpathd/16 4572 root 14 -5 0 0 0 S 0.0 0.0 0:00.00 kmpathd/17 4573 root 14 -5 0 0 0 S 0.0 0.0 0:00.00 kmpathd/18 4574 root 15 -5 0 0 0 S 0.0 0.0 0:00.00 kmpathd/19 4575 root 16 -5 0 0 0 S 0.0 0.0 0:00.00 kmpathd/20 4576 root 15 -5 0 0 0 S 0.0 0.0 0:00.00 kmpathd/21 4577 root 16 -5 0 0 0 S 0.0 0.0 0:00.00 kmpathd/22 4578 root 16 -5 0 0 0 S 0.0 0.0 0:00.00 kmpathd/23 4579 root 18 -5 0 0 0 S 0.0 0.0 0:00.00 kmpath_handlerd 4734 root 13 -5 0 0 0 S 0.0 0.0 0:00.00 kjournald 4736 root 10 -5 0 0 0 S 0.0 0.0 0:04.82 kjournald 4744 root 13 -5 0 0 0 S 0.0 0.0 0:00.00 kjournald 5238 root RT 0 87584 3648 2768 S 0.0 0.0 0:03.60 multipathd 5537 root 11 -4 27328 812 580 S 0.0 0.0 0:00.14 auditd 5539 root 7 -8 81804 768 616 S 0.0 0.0 0:00.04 audispd 5564 root 15 0 5904 632 512 S 0.0 0.0 0:00.10 syslogd 5567 root 15 0 3800 432 344 S 0.0 0.0 0:00.01 klogd 5579 root 18 0 10728 384 244 S 0.0 0.0 0:00.42 irqbalance 5592 rpc 18 0 8048 584 464 S 0.0 0.0 0:00.00 portmap 5625 root 18 0 11032 768 632 S 0.0 0.0 0:00.00 rpc.statd 5681 root 11 -5 0 0 0 S 0.0 0.0 0:00.00 rpciod/0 5682 root 11 -5 0 0 0 S 0.0 0.0 0:00.00 rpciod/1 5683 root 12 -5 0 0 0 S 0.0 0.0 0:00.00 rpciod/2 5684 root 12 -5 0 0 0 S 0.0 0.0 0:00.00 rpciod/3 5685 root 12 -5 0 0 0 S 0.0 0.0 0:00.00 rpciod/4 5686 root 12 -5 0 0 0 S 0.0 0.0 0:00.00 rpciod/5 5687 root 12 -5 0 0 0 S 0.0 0.0 0:00.00 rpciod/6 5688 root 12 -5 0 0 0 S 0.0 0.0 0:00.00 rpciod/7 5689 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 rpciod/8 5690 root 12 -5 0 0 0 S 0.0 0.0 0:00.00 rpciod/9 5691 root 12 -5 0 0 0 S 0.0 0.0 0:00.00 rpciod/10 5692 root 13 -5 0 0 0 S 0.0 0.0 0:00.00 rpciod/11

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  • New CentOS/cPanel servers showing high load averages at idle

    - by Jax
    I have taken delivery of two identically specced CentOS/cPanel servers, showing the same behaviour of a resting load average of 1.30, 1.21, 1.16 and yet the CPU is sitting 100% idle. Hardware: Xeon(R) CPU E3-1270 4GB RAM Behavior:- top shows CPU 99.9% idle virtually no disk IO Some command output :- uname -a Linux server.myserver.com 2.6.18-308.4.1.el5PAE #1 SMP Tue Apr 17 17:47:38 EDT 2012 i686 i686 i386 GNU/Linux top top - 10:37:50 up 1:47, 1 user, load average: 1.28, 1.20, 1.17 Tasks: 199 total, 1 running, 198 sleeping, 0 stopped, 0 zombie Cpu(s): 0.0%us, 0.0%sy, 0.0%ni, 99.9%id, 0.1%wa, 0.0%hi, 0.0%si, 0.0%st Mem: 4125104k total, 438764k used, 3686340k free, 25788k buffers Swap: 2096440k total, 0k used, 2096440k free, 291080k cached PID USER PR NI VIRT RES SHR S %CPU %MEM TIME+ COMMAND 1 root 15 0 2160 640 552 S 0.0 0.0 0:00.89 init 2 root RT -5 0 0 0 S 0.0 0.0 0:00.00 migration/0 3 root 34 19 0 0 0 S 0.0 0.0 0:00.00 ksoftirqd/0 4 root RT -5 0 0 0 S 0.0 0.0 0:00.00 watchdog/0 5 root RT -5 0 0 0 S 0.0 0.0 0:00.00 migration/1 6 root 34 19 0 0 0 S 0.0 0.0 0:00.00 ksoftirqd/1 7 root RT -5 0 0 0 S 0.0 0.0 0:00.00 watchdog/1 8 root RT -5 0 0 0 S 0.0 0.0 0:00.00 migration/2 9 root 35 19 0 0 0 S 0.0 0.0 0:00.00 ksoftirqd/2 10 root RT -5 0 0 0 S 0.0 0.0 0:00.00 watchdog/2 11 root RT -5 0 0 0 S 0.0 0.0 0:00.00 migration/3 12 root 34 19 0 0 0 S 0.0 0.0 0:00.00 ksoftirqd/3 13 root RT -5 0 0 0 S 0.0 0.0 0:00.00 watchdog/3 14 root RT -5 0 0 0 S 0.0 0.0 0:00.00 migration/4 15 root 34 19 0 0 0 S 0.0 0.0 0:00.00 ksoftirqd/4 16 root RT -5 0 0 0 S 0.0 0.0 0:00.00 watchdog/4 17 root RT -5 0 0 0 S 0.0 0.0 0:00.00 migration/5 18 root 38 19 0 0 0 S 0.0 0.0 0:00.00 ksoftirqd/5 19 root RT -5 0 0 0 S 0.0 0.0 0:00.00 watchdog/5 20 root RT -5 0 0 0 S 0.0 0.0 0:00.00 migration/6 21 root 34 19 0 0 0 S 0.0 0.0 0:00.00 ksoftirqd/6 22 root RT -5 0 0 0 S 0.0 0.0 0:00.00 watchdog/6 23 root RT -5 0 0 0 S 0.0 0.0 0:00.00 migration/7 24 root 34 19 0 0 0 S 0.0 0.0 0:00.00 ksoftirqd/7 25 root RT -5 0 0 0 S 0.0 0.0 0:00.00 watchdog/7 26 root 10 -5 0 0 0 S 0.0 0.0 0:06.42 events/0 27 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 events/1 28 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 events/2 29 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 events/3 30 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 events/4 31 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 events/5 32 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 events/6 33 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 events/7 34 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 khelper 35 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 kthread 45 root 13 -5 0 0 0 S 0.0 0.0 0:00.00 kblockd/0 46 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 kblockd/1 47 root 14 -5 0 0 0 S 0.0 0.0 0:00.00 kblockd/2 48 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 kblockd/3 49 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 kblockd/4 50 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 kblockd/5 51 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 kblockd/6 52 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 kblockd/7 53 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 kacpid 189 root 11 -5 0 0 0 S 0.0 0.0 0:00.00 cqueue/0 190 root 11 -5 0 0 0 S 0.0 0.0 0:00.00 cqueue/1 191 root 12 -5 0 0 0 S 0.0 0.0 0:00.00 cqueue/2 192 root 12 -5 0 0 0 S 0.0 0.0 0:00.00 cqueue/3 193 root 13 -5 0 0 0 S 0.0 0.0 0:00.00 cqueue/4 194 root 13 -5 0 0 0 S 0.0 0.0 0:00.00 cqueue/5 195 root 14 -5 0 0 0 S 0.0 0.0 0:00.00 cqueue/6 196 root 14 -5 0 0 0 S 0.0 0.0 0:00.00 cqueue/7 199 root 10 -5 0 0 0 S 0.0 0.0 0:00.00 khubd ps axf PID TTY STAT TIME COMMAND 1 ? Ss 0:00 init [3] 2 ? S< 0:00 [migration/0] 3 ? SN 0:00 [ksoftirqd/0] 4 ? S< 0:00 [watchdog/0] 5 ? S< 0:00 [migration/1] 6 ? SN 0:00 [ksoftirqd/1] 7 ? S< 0:00 [watchdog/1] 8 ? S< 0:00 [migration/2] 9 ? SN 0:00 [ksoftirqd/2] 10 ? S< 0:00 [watchdog/2] 11 ? S< 0:00 [migration/3] 12 ? SN 0:00 [ksoftirqd/3] 13 ? S< 0:00 [watchdog/3] 14 ? S< 0:00 [migration/4] 15 ? SN 0:00 [ksoftirqd/4] 16 ? S< 0:00 [watchdog/4] 17 ? S< 0:00 [migration/5] 18 ? SN 0:00 [ksoftirqd/5] 19 ? S< 0:00 [watchdog/5] 20 ? S< 0:00 [migration/6] 21 ? SN 0:00 [ksoftirqd/6] 22 ? S< 0:00 [watchdog/6] 23 ? S< 0:00 [migration/7] 24 ? SN 0:00 [ksoftirqd/7] 25 ? S< 0:00 [watchdog/7] 26 ? S< 0:06 [events/0] 27 ? S< 0:00 [events/1] 28 ? S< 0:00 [events/2] 29 ? S< 0:00 [events/3] 30 ? S< 0:00 [events/4] 31 ? S< 0:00 [events/5] 32 ? S< 0:00 [events/6] 33 ? S< 0:00 [events/7] 34 ? S< 0:00 [khelper] 35 ? S< 0:00 [kthread] 45 ? S< 0:00 \_ [kblockd/0] 46 ? S< 0:00 \_ [kblockd/1] 47 ? S< 0:00 \_ [kblockd/2] 48 ? S< 0:00 \_ [kblockd/3] 49 ? S< 0:00 \_ [kblockd/4] 50 ? S< 0:00 \_ [kblockd/5] 51 ? S< 0:00 \_ [kblockd/6] 52 ? S< 0:00 \_ [kblockd/7] 53 ? S< 0:00 \_ [kacpid] 189 ? S< 0:00 \_ [cqueue/0] 190 ? S< 0:00 \_ [cqueue/1] 191 ? S< 0:00 \_ [cqueue/2] 192 ? S< 0:00 \_ [cqueue/3] 193 ? S< 0:00 \_ [cqueue/4] 194 ? S< 0:00 \_ [cqueue/5] 195 ? S< 0:00 \_ [cqueue/6] 196 ? S< 0:00 \_ [cqueue/7] 199 ? S< 0:00 \_ [khubd] 201 ? S< 0:00 \_ [kseriod] 301 ? S 0:00 \_ [khungtaskd] 302 ? S 0:00 \_ [pdflush] 303 ? S 0:00 \_ [pdflush] 304 ? S< 0:00 \_ [kswapd0] 305 ? S< 0:00 \_ [aio/0] 306 ? S< 0:00 \_ [aio/1] 307 ? S< 0:00 \_ [aio/2] 308 ? S< 0:00 \_ [aio/3] 309 ? S< 0:00 \_ [aio/4] 310 ? S< 0:00 \_ [aio/5] 311 ? S< 0:00 \_ [aio/6] 312 ? S< 0:00 \_ [aio/7] 472 ? S< 0:00 \_ [kpsmoused] 551 ? S< 0:00 \_ [ata/0] 552 ? S< 0:00 \_ [ata/1] 553 ? S< 0:00 \_ [ata/2] 554 ? S< 0:00 \_ [ata/3] 555 ? S< 0:00 \_ [ata/4] 556 ? S< 0:00 \_ [ata/5] 557 ? S< 0:00 \_ [ata/6] 558 ? S< 0:00 \_ [ata/7] 559 ? S< 0:00 \_ [ata_aux] 569 ? S< 0:00 \_ [scsi_eh_0] 570 ? S< 0:00 \_ [scsi_eh_1] 571 ? S< 0:00 \_ [scsi_eh_2] 572 ? S< 0:00 \_ [scsi_eh_3] 573 ? S< 0:00 \_ [scsi_eh_4] 574 ? S< 0:00 \_ [scsi_eh_5] 593 ? S< 0:00 \_ [kstriped] 630 ? S< 0:00 \_ [kjournald] 655 ? S< 0:00 \_ [kauditd] 1860 ? S< 0:00 \_ [kmpathd/0] 1861 ? S< 0:00 \_ [kmpathd/1] 1862 ? S< 0:00 \_ [kmpathd/2] 1863 ? S< 0:00 \_ [kmpathd/3] 1864 ? S< 0:00 \_ [kmpathd/4] 1865 ? S< 0:00 \_ [kmpathd/5] 1866 ? S< 0:00 \_ [kmpathd/6] 1867 ? S< 0:00 \_ [kmpathd/7] 1868 ? S< 0:00 \_ [kmpath_handlerd] 1902 ? S< 0:00 \_ [kjournald] 1904 ? S< 0:00 \_ [kjournald] 1906 ? S< 0:00 \_ [kjournald] 1908 ? S< 0:00 \_ [kjournald] 1910 ? S< 0:00 \_ [kjournald] 2184 ? S< 0:00 \_ [iscsi_eh] 2288 ? S< 0:00 \_ [cnic_wq] 2298 ? S< 0:00 \_ [bnx2i_thread/0] 2299 ? S< 0:00 \_ [bnx2i_thread/1] 2300 ? S< 0:00 \_ [bnx2i_thread/2] 2301 ? S< 0:00 \_ [bnx2i_thread/3] 2302 ? S< 0:00 \_ [bnx2i_thread/4] 2303 ? S< 0:00 \_ [bnx2i_thread/5] 2304 ? S< 0:00 \_ [bnx2i_thread/6] 2305 ? S< 0:00 \_ [bnx2i_thread/7] 2330 ? S< 0:00 \_ [ib_addr] 2359 ? S< 0:00 \_ [ib_mcast] 2360 ? S< 0:00 \_ [ib_inform] 2361 ? S< 0:00 \_ [local_sa] 2371 ? S< 0:00 \_ [iw_cm_wq] 2381 ? S< 0:00 \_ [ib_cm/0] 2382 ? S< 0:00 \_ [ib_cm/1] 2383 ? S< 0:00 \_ [ib_cm/2] 2384 ? S< 0:00 \_ [ib_cm/3] 2385 ? S< 0:00 \_ [ib_cm/4] 2386 ? S< 0:00 \_ [ib_cm/5] 2387 ? S< 0:00 \_ [ib_cm/6] 2388 ? S< 0:00 \_ [ib_cm/7] 2398 ? S< 0:00 \_ [rdma_cm] 2684 ? S< 0:00 \_ [bond0] 2882 ? S< 0:00 \_ [bond1] 3195 ? S< 0:00 \_ [kondemand/0] 3197 ? S< 0:00 \_ [kondemand/1] 3198 ? S< 0:00 \_ [kondemand/2] 3199 ? S< 0:00 \_ [kondemand/3] 3200 ? S< 0:00 \_ [kondemand/4] 3201 ? S< 0:00 \_ [kondemand/5] 3202 ? S< 0:00 \_ [kondemand/6] 3203 ? S< 0:00 \_ [kondemand/7] 688 ? S<s 0:00 /sbin/udevd -d 2425 ? S<Lsl 0:00 iscsiuio 2432 ? Ss 0:00 iscsid 2434 ? S<Ls 0:00 iscsid 3061 ? S<sl 0:00 auditd 3063 ? S<sl 0:00 \_ /sbin/audispd 3121 ? Ss 0:00 syslogd -m 0 3124 ? Ss 0:00 klogd -x 3220 ? Ss 0:00 irqbalance 3278 ? Ss 0:00 dbus-daemon --system 3324 ? Ss 0:00 /usr/sbin/acpid 3337 ? Ss 0:00 hald 3338 ? S 0:00 \_ hald-runner 3345 ? S 0:00 \_ hald-addon-acpi: listening on acpid socket /var/run/acpid.socket 3349 ? S 0:00 \_ hald-addon-keyboard: listening on /dev/input/event1 3360 ? S 0:00 \_ hald-addon-storage: polling /dev/sr0 3413 ? Ssl 0:00 automount 3435 ? Ssl 0:00 /usr/sbin/named -u named 3466 ? Ss 0:00 /usr/sbin/sshd 4072 ? Ss 0:00 \_ sshd: root@pts/0 4078 pts/0 Ss 0:00 \_ -bash 5436 pts/0 R+ 0:00 \_ ps axf 3484 ? Ss 0:00 xinetd -stayalive -pidfile /var/run/xinetd.pid 3500 ? SLs 0:00 ntpd -u ntp:ntp -p /var/run/ntpd.pid -g 3514 ? S 0:00 /bin/sh /usr/bin/mysqld_safe --datadir=/var/lib/mysql --pid-file=/var/lib/mysql/server.myserver.com.pid 3575 ? Sl 0:00 \_ /usr/sbin/mysqld --basedir=/ --datadir=/var/lib/mysql --user=mysql --log-error=/var/lib/mysql/server.myserver.com.err --pid-fil 3687 ? Ss 0:00 /usr/sbin/exim -bd -q1h 3709 ? Ss 0:00 /usr/sbin/dovecot 3710 ? S 0:00 \_ dovecot-auth 3725 ? S 0:00 \_ pop3-login 3726 ? S 0:00 \_ pop3-login 3727 ? S 0:00 \_ imap-login 3728 ? S 0:00 \_ imap-login 3729 ? Ss 0:00 /usr/local/apache/bin/httpd -k start -DSSL 4326 ? S 0:00 \_ /usr/bin/perl /usr/local/cpanel/bin/leechprotect 4332 ? S 0:00 \_ /usr/local/apache/bin/httpd -k start -DSSL 4333 ? S 0:00 \_ /usr/local/apache/bin/httpd -k start -DSSL 4334 ? S 0:00 \_ /usr/local/apache/bin/httpd -k start -DSSL 4335 ? S 0:00 \_ /usr/local/apache/bin/httpd -k start -DSSL 4336 ? S 0:00 \_ /usr/local/apache/bin/httpd -k start -DSSL 4337 ? S 0:00 \_ /usr/local/apache/bin/httpd -k start -DSSL 4382 ? S 0:00 \_ /usr/local/apache/bin/httpd -k start -DSSL 4383 ? S 0:00 \_ /usr/local/apache/bin/httpd -k start -DSSL 4384 ? S 0:00 \_ /usr/local/apache/bin/httpd -k start -DSSL 5389 ? S 0:00 \_ /usr/local/apache/bin/httpd -k start -DSSL 5390 ? S 0:00 \_ /usr/local/apache/bin/httpd -k start -DSSL 3741 ? Ss 0:00 pure-ftpd (SERVER) 3746 ? S 0:00 /usr/sbin/pure-authd -s /var/run/ftpd.sock -r /usr/sbin/pureauth 3759 ? Ss 0:00 crond 3772 ? Ss 0:00 /usr/sbin/atd 3909 ? S 0:00 cpsrvd (SSL) - waiting for connections 5435 ? Z 0:00 \_ [cpsrvd-ssl] <defunct> 3931 ? S 0:00 queueprocd - wait to process a task 3948 ? S 0:00 tailwatchd 3954 ? SN 0:00 cpanellogd - sleeping for logs 4003 ? Ss 0:00 ./nimbus /opt/nimsoft 4016 ? S 0:00 \_ nimbus(controller) 4053 ? Sl 0:00 \_ nimbus(spooler) 4066 ? S 0:00 \_ nimbus(hdb) 4069 ? S 0:00 \_ nimbus(cdm) 4070 ? S 0:00 \_ nimbus(processes) 4023 ? S 0:00 /usr/sbin/smartd -q never 4027 tty1 Ss+ 0:00 /sbin/mingetty tty1 4028 tty2 Ss+ 0:00 /sbin/mingetty tty2 4029 tty3 Ss+ 0:00 /sbin/mingetty tty3 4030 tty4 Ss+ 0:00 /sbin/mingetty tty4 4031 tty5 Ss+ 0:00 /sbin/mingetty tty5 4033 tty6 Ss+ 0:00 /sbin/mingetty tty6 4035 ttyS1 Ss+ 0:00 /sbin/agetty -h -L ttyS1 19200 vt100 vmstat 10 6 procs -----------memory---------- ---swap-- -----io---- --system-- -----cpu------ r b swpd free buff cache si so bi bo in cs us sy id wa st 0 0 0 3718136 25684 257424 0 0 8 3 127 189 0 0 100 0 0 0 0 0 3718136 25700 257420 0 0 0 7 1013 1500 0 0 100 0 0 0 0 0 3718136 25700 257424 0 0 0 1 1013 1551 0 0 100 0 0 0 0 0 3718136 25700 257424 0 0 0 0 1012 1469 0 0 100 0 0 1 0 0 3712680 25716 257424 0 0 0 2 1013 1542 0 0 100 0 0 0 0 0 3718376 25740 257424 0 0 0 46 1017 1534 0 0 100 0 0 Can anyone advise me as to what is the cause of and how I may resolve this behaviour? A kernel/driver conflict perhaps? I don't see any processes in R or D state that might inflate the load averages artificially, I realise it may be considered low in an 8 thread system but its higher at idle than any normal behaviour I've previously come across. Thanks in advance for your time. Edit: iotop Total DISK READ: 0.00 B/s | Total DISK WRITE: 0.00 B/s TID PRIO USER DISK READ DISK WRITE SWAPIN IO> COMMAND 26 be/3 root 0.00 B/s 0.00 B/s 0.00 % 0.29 % [events/0] 3205 be/3 root 0.00 B/s 0.00 B/s 0.00 % 0.10 % [kondemand/2] 3208 be/3 root 0.00 B/s 0.00 B/s 0.00 % 0.00 % [kondemand/5] 3209 be/3 root 0.00 B/s 0.00 B/s 0.00 % 0.00 % [kondemand/6] 3207 be/3 root 0.00 B/s 0.00 B/s 0.10 % 0.00 % [kondemand/4] 3210 be/3 root 0.00 B/s 0.00 B/s 0.00 % 0.00 % [kondemand/7] 3227 be/4 root 0.00 B/s 0.00 B/s 0.00 % 0.00 % irqbalance 3288 be/3 root 0.00 B/s 0.00 B/s 0.00 % 0.00 % [rpciod/1] 3287 be/3 root 0.00 B/s 0.00 B/s 0.00 % 0.00 % [rpciod/0] 3206 be/3 root 0.00 B/s 0.00 B/s 0.00 % 0.00 % [kondemand/3] 3069 be/3 root 0.00 B/s 0.00 B/s 0.00 % 0.00 % auditd 3070 be/2 root 0.00 B/s 0.00 B/s 0.00 % 0.00 % audispd 655 be/3 root 0.00 B/s 0.00 B/s 0.00 % 0.00 % [kauditd] 3619 be/4 root 0.00 B/s 0.00 B/s 0.00 % 0.00 % automount 3 be/7 root 0.00 B/s 0.00 B/s 0.00 % 0.00 % [ksoftirqd/0] 3068 be/3 root 0.00 B/s 0.00 B/s 0.00 % 0.00 % auditd 29 be/3 root 0.00 B/s 0.00 B/s 0.00 % 0.00 % [events/3] 4 rt/3 root 0.00 B/s 0.00 B/s 0.00 % 0.00 % [watchdog/0] 7 rt/3 root 0.00 B/s 0.00 B/s 0.00 % 0.00 % [watchdog/1] 10 rt/3 root 0.00 B/s 0.00 B/s 0.00 % 0.00 % [watchdog/2] 13 rt/3 root 0.00 B/s 0.00 B/s 0.00 % 0.00 % [watchdog/3] 16 rt/3 root 0.00 B/s 0.00 B/s 0.00 % 0.00 % [watchdog/4] 19 rt/3 root 0.00 B/s 0.00 B/s 0.00 % 0.00 % [watchdog/5] 22 rt/3 root 0.00 B/s 0.00 B/s 0.00 % 0.00 % [watchdog/6] 25 rt/3 root 0.00 B/s 0.00 B/s 0.00 % 0.00 % [watchdog/7] 27 be/3 root 0.00 B/s 0.00 B/s 0.00 % 0.00 % [events/1] 28 be/3 root 0.00 B/s 0.00 B/s 0.29 % 0.00 % [events/2] 30 be/3 root 0.00 B/s 0.00 B/s 0.00 % 0.00 % [events/4] 31 be/3 root 0.00 B/s 0.00 B/s 0.00 % 0.00 % [events/5] 32 be/3 root 0.00 B/s 0.00 B/s 0.00 % 0.00 % [events/6] 33 be/3 root 0.00 B/s 0.00 B/s 0.00 % 0.00 % [events/7] 34 be/3 root 0.00 B/s 0.00 B/s 0.00 % 0.00 % [khelper] 35 be/3 root 0.00 B/s 0.00 B/s 0.00 % 0.00 % [kthread] 45 be/3 root 0.00 B/s 0.00 B/s 0.00 % 0.00 % [kblockd/0]

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  • c++ optimize array of ints

    - by a432511
    I have a 2D lookup table of int16_t. int16_t my_array[37][73] = {{**DATA HERE**}} I have a mixture of values that range from just above the range of int8_t to just below the range of int8_t and some of the values repeat themselves. I am trying to reduce the size of this lookup table. What I have done so far is split each int16_t value into two int8_t values to visualize the wasted bytes. int8_t part_1 = original_value >> 4; int8_t part_2 = original_value & 0x0000FFFF; // If the upper 4 bits of the original_value were empty if(part_1 == 0) wasted_bytes_count++; I can easily remove the zero value int8_t that are wasting a byte of space and I can also remove the duplicate values, but my question is how do I do remove those values while retaining the ability to lookup based on the two indices? I contemplated translating this into a 1D array and adding a number following each duplicated value that would represent the number of duplicates that were removed, but I am struggling with how I would then identify what is a lookup value and what is a duplicate count. Also, it is further complicated by stripping out the zero int8_t values that were wasted bytes. EDIT: This array is stored in ROM already. RAM is even more limited than ROM so it is already stored in ROM. EDIT: I am going to post a bounty for this question as soon as I can. I need a complete answer of how to store the information AND retrieve it. It does not need to be a 2D array as long as I can get the same values. EDIT: Adding the actual array below: {150,145,140,135,130,125,120,115,110,105,100,95,90,85,80,75,70,65,60,55,50,45,40,35,30,25,20,15,10,5,0,-4,-9,-14,-19,-24,-29,-34,-39,-44,-49,-54,-59,-64,-69,-74,-79,-84,-89,-94,-99,104,109,114,119,124,129,134,139,144,149,154,159,164,169,174,179,175,170,165,160,155,150}, \ {143,137,131,126,120,115,110,105,100,95,90,85,80,75,71,66,62,57,53,48,44,39,35,31,27,22,18,14,9,5,1,-3,-7,-11,-16,-20,-25,-29,-34,-38,-43,-47,-52,-57,-61,-66,-71,-76,-81,-86,-91,-96,101,107,112,117,123,128,134,140,146,151,157,163,169,175,178,172,166,160,154,148,143}, \ {130,124,118,112,107,101,96,92,87,82,78,74,70,65,61,57,54,50,46,42,38,34,31,27,23,19,16,12,8,4,1,-2,-6,-10,-14,-18,-22,-26,-30,-34,-38,-43,-47,-51,-56,-61,-65,-70,-75,-79,-84,-89,-94,100,105,111,116,122,128,135,141,148,155,162,170,177,174,166,159,151,144,137,130}, \ {111,104,99,94,89,85,81,77,73,70,66,63,60,56,53,50,46,43,40,36,33,30,26,23,20,16,13,10,6,3,0,-3,-6,-9,-13,-16,-20,-24,-28,-32,-36,-40,-44,-48,-52,-57,-61,-65,-70,-74,-79,-84,-88,-93,-98,103,109,115,121,128,135,143,152,162,172,176,165,154,144,134,125,118,111}, \ {85,81,77,74,71,68,65,63,60,58,56,53,51,49,46,43,41,38,35,32,29,26,23,19,16,13,10,7,4,1,-1,-3,-6,-9,-13,-16,-19,-23,-26,-30,-34,-38,-42,-46,-50,-54,-58,-62,-66,-70,-74,-78,-83,-87,-91,-95,100,105,110,117,124,133,144,159,178,160,141,125,112,103,96,90,85}, \ {62,60,58,57,55,54,52,51,50,48,47,46,44,42,41,39,36,34,31,28,25,22,19,16,13,10,7,4,2,0,-3,-5,-8,-10,-13,-16,-19,-22,-26,-29,-33,-37,-41,-45,-49,-53,-56,-60,-64,-67,-70,-74,-77,-80,-83,-86,-89,-91,-94,-97,101,105,111,130,109,84,77,74,71,68,66,64,62}, \ {46,46,45,44,44,43,42,42,41,41,40,39,38,37,36,35,33,31,28,26,23,20,16,13,10,7,4,1,-1,-3,-5,-7,-9,-12,-14,-16,-19,-22,-26,-29,-33,-36,-40,-44,-48,-51,-55,-58,-61,-64,-66,-68,-71,-72,-74,-74,-75,-74,-72,-68,-61,-48,-25,2,22,33,40,43,45,46,47,46,46}, \ {36,36,36,36,36,35,35,35,35,34,34,34,34,33,32,31,30,28,26,23,20,17,14,10,6,3,0,-2,-4,-7,-9,-10,-12,-14,-15,-17,-20,-23,-26,-29,-32,-36,-40,-43,-47,-50,-53,-56,-58,-60,-62,-63,-64,-64,-63,-62,-59,-55,-49,-41,-30,-17,-4,6,15,22,27,31,33,34,35,36,36}, \ {30,30,30,30,30,30,30,29,29,29,29,29,29,29,29,28,27,26,24,21,18,15,11,7,3,0,-3,-6,-9,-11,-12,-14,-15,-16,-17,-19,-21,-23,-26,-29,-32,-35,-39,-42,-45,-48,-51,-53,-55,-56,-57,-57,-56,-55,-53,-49,-44,-38,-31,-23,-14,-6,0,7,13,17,21,24,26,27,29,29,30}, \ {25,25,26,26,26,25,25,25,25,25,25,25,25,26,25,25,24,23,21,19,16,12,8,4,0,-3,-7,-10,-13,-15,-16,-17,-18,-19,-20,-21,-22,-23,-25,-28,-31,-34,-37,-40,-43,-46,-48,-49,-50,-51,-51,-50,-48,-45,-42,-37,-32,-26,-19,-13,-7,-1,3,7,11,14,17,19,21,23,24,25,25}, \ {21,22,22,22,22,22,22,22,22,22,22,22,22,22,22,22,21,20,18,16,13,9,5,1,-3,-7,-11,-14,-17,-18,-20,-21,-21,-22,-22,-22,-23,-23,-25,-27,-29,-32,-35,-37,-40,-42,-44,-45,-45,-45,-44,-42,-40,-36,-32,-27,-22,-17,-12,-7,-3,0,3,7,9,12,14,16,18,19,20,21,21}, \ {18,19,19,19,19,19,19,19,19,19,19,19,19,19,19,19,18,17,16,14,10,7,2,-1,-6,-10,-14,-17,-19,-21,-22,-23,-24,-24,-24,-24,-23,-23,-23,-24,-26,-28,-30,-33,-35,-37,-38,-39,-39,-38,-36,-34,-31,-28,-24,-19,-15,-10,-6,-3,0,1,4,6,8,10,12,14,15,16,17,18,18}, \ {16,16,17,17,17,17,17,17,17,17,17,16,16,16,16,16,16,15,13,11,8,4,0,-4,-9,-13,-16,-19,-21,-23,-24,-25,-25,-25,-25,-24,-23,-21,-20,-20,-21,-22,-24,-26,-28,-30,-31,-32,-31,-30,-29,-27,-24,-21,-17,-13,-9,-6,-3,-1,0,2,4,5,7,9,10,12,13,14,15,16,16}, \ {14,14,14,15,15,15,15,15,15,15,14,14,14,14,14,14,13,12,11,9,5,2,-2,-6,-11,-15,-18,-21,-23,-24,-25,-25,-25,-25,-24,-22,-21,-18,-16,-15,-15,-15,-17,-19,-21,-22,-24,-24,-24,-23,-22,-20,-18,-15,-12,-9,-5,-3,-1,0,1,2,4,5,6,8,9,10,11,12,13,14,14}, \ {12,13,13,13,13,13,13,13,13,13,13,13,12,12,12,12,11,10,9,6,3,0,-4,-8,-12,-16,-19,-21,-23,-24,-24,-24,-24,-23,-22,-20,-17,-15,-12,-10,-9,-9,-10,-12,-13,-15,-17,-17,-18,-17,-16,-15,-13,-11,-8,-5,-3,-1,0,1,1,2,3,4,6,7,8,9,10,11,12,12,12}, \ {11,11,11,11,11,12,12,12,12,12,11,11,11,11,11,10,10,9,7,5,2,-1,-5,-9,-13,-17,-20,-22,-23,-23,-23,-23,-22,-20,-18,-16,-14,-11,-9,-6,-5,-4,-5,-6,-8,-9,-11,-12,-12,-12,-12,-11,-9,-8,-6,-3,-1,0,0,1,1,2,3,4,5,6,7,8,9,10,11,11,11}, \ {10,10,10,10,10,10,10,10,10,10,10,10,10,10,9,9,9,7,6,3,0,-3,-6,-10,-14,-17,-20,-21,-22,-22,-22,-21,-19,-17,-15,-13,-10,-8,-6,-4,-2,-2,-2,-2,-4,-5,-7,-8,-8,-9,-8,-8,-7,-5,-4,-2,0,0,1,1,1,2,2,3,4,5,6,7,8,9,10,10,10}, \ {9,9,9,9,9,9,9,10,10,9,9,9,9,9,9,8,8,6,5,2,0,-4,-7,-11,-15,-17,-19,-21,-21,-21,-20,-18,-16,-14,-12,-10,-8,-6,-4,-2,-1,0,0,0,-1,-2,-4,-5,-5,-6,-6,-5,-5,-4,-3,-1,0,0,1,1,1,1,2,3,3,5,6,7,8,8,9,9,9}, \ {9,9,9,9,9,9,9,9,9,9,9,9,8,8,8,8,7,5,4,1,-1,-5,-8,-12,-15,-17,-19,-20,-20,-19,-18,-16,-14,-11,-9,-7,-5,-4,-2,-1,0,0,1,1,0,0,-2,-3,-3,-4,-4,-4,-3,-3,-2,-1,0,0,0,0,0,1,1,2,3,4,5,6,7,8,8,9,9}, \ {9,9,9,8,8,8,9,9,9,9,9,8,8,8,8,7,6,5,3,0,-2,-5,-9,-12,-15,-17,-18,-19,-19,-18,-16,-14,-12,-9,-7,-5,-4,-2,-1,0,0,1,1,1,1,0,0,-1,-2,-2,-3,-3,-2,-2,-1,-1,0,0,0,0,0,0,0,1,2,3,4,5,6,7,8,8,9}, \ {8,8,8,8,8,8,9,9,9,9,9,9,8,8,8,7,6,4,2,0,-3,-6,-9,-12,-15,-17,-18,-18,-17,-16,-14,-12,-10,-8,-6,-4,-2,-1,0,0,1,2,2,2,2,1,0,0,-1,-1,-1,-2,-2,-1,-1,0,0,0,0,0,0,0,0,0,1,2,3,4,5,6,7,8,8}, \ {8,8,8,8,9,9,9,9,9,9,9,9,9,8,8,7,5,3,1,-1,-4,-7,-10,-13,-15,-16,-17,-17,-16,-15,-13,-11,-9,-6,-5,-3,-2,0,0,0,1,2,2,2,2,1,1,0,0,0,-1,-1,-1,-1,-1,0,0,0,0,-1,-1,-1,-1,-1,0,0,1,3,4,5,7,7,8}, \ {8,8,9,9,9,9,10,10,10,10,10,10,10,9,8,7,5,3,0,-2,-5,-8,-11,-13,-15,-16,-16,-16,-15,-13,-12,-10,-8,-6,-4,-2,-1,0,0,1,2,2,3,3,2,2,1,0,0,0,0,0,0,0,0,0,0,-1,-1,-2,-2,-2,-2,-2,-1,0,0,1,3,4,6,7,8}, \ {7,8,9,9,9,10,10,11,11,11,11,11,10,10,9,7,5,3,0,-2,-6,-9,-11,-13,-15,-16,-16,-15,-14,-13,-11,-9,-7,-5,-3,-2,0,0,1,1,2,3,3,3,3,2,2,1,1,0,0,0,0,0,0,0,-1,-1,-2,-3,-3,-4,-4,-4,-3,-2,-1,0,1,3,5,6,7}, \ {6,8,9,9,10,11,11,12,12,12,12,12,11,11,9,7,5,2,0,-3,-7,-10,-12,-14,-15,-16,-15,-15,-13,-12,-10,-8,-7,-5,-3,-1,0,0,1,2,2,3,3,4,3,3,3,2,2,1,1,1,0,0,0,0,-1,-2,-3,-4,-4,-5,-5,-5,-5,-4,-2,-1,0,2,3,5,6}, \ {6,7,8,10,11,12,12,13,13,14,14,13,13,11,10,8,5,2,0,-4,-8,-11,-13,-15,-16,-16,-16,-15,-13,-12,-10,-8,-6,-5,-3,-1,0,0,1,2,3,3,4,4,4,4,4,3,3,3,2,2,1,1,0,0,-1,-2,-3,-5,-6,-7,-7,-7,-6,-5,-4,-3,-1,0,2,4,6}, \ {5,7,8,10,11,12,13,14,15,15,15,14,14,12,11,8,5,2,-1,-5,-9,-12,-14,-16,-17,-17,-16,-15,-14,-12,-11,-9,-7,-5,-3,-1,0,0,1,2,3,4,4,5,5,5,5,5,5,4,4,3,3,2,1,0,-1,-2,-4,-6,-7,-8,-8,-8,-8,-7,-6,-4,-2,0,1,3,5}, \ {4,6,8,10,12,13,14,15,16,16,16,16,15,13,11,9,5,2,-2,-6,-10,-13,-16,-17,-18,-18,-17,-16,-15,-13,-11,-9,-7,-5,-4,-2,0,0,1,3,3,4,5,6,6,7,7,7,7,7,6,5,4,3,2,0,-1,-3,-5,-7,-8,-9,-10,-10,-10,-9,-7,-5,-4,-1,0,2,4}, \ {4,6,8,10,12,14,15,16,17,18,18,17,16,15,12,9,5,1,-3,-8,-12,-15,-18,-19,-20,-20,-19,-18,-16,-15,-13,-11,-8,-6,-4,-2,-1,0,1,3,4,5,6,7,8,9,9,9,9,9,9,8,7,5,3,1,-1,-3,-6,-8,-10,-11,-12,-12,-11,-10,-9,-7,-5,-2,0,1,4}, \ {4,6,8,11,13,15,16,18,19,19,19,19,18,16,13,10,5,0,-5,-10,-15,-18,-21,-22,-23,-22,-22,-20,-18,-17,-14,-12,-10,-8,-5,-3,-1,0,1,3,5,6,8,9,10,11,12,12,13,12,12,11,9,7,5,2,0,-3,-6,-9,-11,-12,-13,-13,-12,-11,-10,-8,-6,-3,-1,1,4}, \ {3,6,9,11,14,16,17,19,20,21,21,21,19,17,14,10,4,-1,-8,-14,-19,-22,-25,-26,-26,-26,-25,-23,-21,-19,-17,-14,-12,-9,-7,-4,-2,0,1,3,5,7,9,11,13,14,15,16,16,16,16,15,13,10,7,4,0,-3,-7,-10,-12,-14,-15,-14,-14,-12,-11,-9,-6,-4,-1,1,3}, \ {4,6,9,12,14,17,19,21,22,23,23,23,21,19,15,9,2,-5,-13,-20,-25,-28,-30,-31,-31,-30,-29,-27,-25,-22,-20,-17,-14,-11,-9,-6,-3,0,1,4,6,9,11,13,15,17,19,20,21,21,21,20,18,15,11,6,2,-2,-7,-11,-13,-15,-16,-16,-15,-13,-11,-9,-7,-4,-1,1,4}, \ {4,7,10,13,15,18,20,22,24,25,25,25,23,20,15,7,-2,-12,-22,-29,-34,-37,-38,-38,-37,-36,-34,-31,-29,-26,-23,-20,-17,-13,-10,-7,-4,-1,2,5,8,11,13,16,18,21,23,24,26,26,26,26,24,21,17,12,5,0,-6,-10,-14,-16,-16,-16,-15,-14,-12,-10,-7,-4,-1,1,4}, \ {4,7,10,13,16,19,22,24,26,27,27,26,24,19,11,-1,-15,-28,-37,-43,-46,-47,-47,-45,-44,-41,-39,-36,-32,-29,-26,-22,-19,-15,-11,-8,-4,-1,2,5,9,12,15,19,22,24,27,29,31,33,33,33,32,30,26,21,14,6,0,-6,-11,-14,-15,-16,-15,-14,-12,-9,-7,-4,-1,1,4}, \ {6,9,12,15,18,21,23,25,27,28,27,24,17,4,-14,-34,-49,-56,-60,-60,-60,-58,-56,-53,-50,-47,-43,-40,-36,-32,-28,-25,-21,-17,-13,-9,-5,-1,2,6,10,14,17,21,24,28,31,34,37,39,41,42,43,43,41,38,33,25,17,8,0,-4,-8,-10,-10,-10,-8,-7,-4,-2,0,3,6}, \ {22,24,26,28,30,32,33,31,23,-18,-81,-96,-99,-98,-95,-93,-89,-86,-82,-78,-74,-70,-66,-62,-57,-53,-49,-44,-40,-36,-32,-27,-23,-19,-14,-10,-6,-1,2,6,10,15,19,23,27,31,35,38,42,45,49,52,55,57,60,61,63,63,62,61,57,53,47,40,33,28,23,21,19,19,19,20,22}, \ {168,173,178,176,171,166,161,156,151,146,141,136,131,126,121,116,111,106,101,-96,-91,-86,-81,-76,-71,-66,-61,-56,-51,-46,-41,-36,-31,-26,-21,-16,-11,-6,-1,3,8,13,18,23,28,33,38,43,48,53,58,63,68,73,78,83,88,93,98,103,108,113,118,123,128,133,138,143,148,153,158,163,168}, \ Thanks for your time.

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  • Very different I/O performance in C++ on Windows

    - by Mr.Gate
    Hi all, I'm a new user and my english is not so good so I hope to be clear. We're facing a performance problem using large files (1GB or more) expecially (as it seems) when you try to grow them in size. Anyway... to verify our sensations we tryed the following (on Win 7 64Bit, 4core, 8GB Ram, 32 bit code compiled with VC2008) a) Open an unexisting file. Write it from the beginning up to 1Gb in 1Mb slots. Now you have a 1Gb file. Now randomize 10000 positions within that file, seek to that position and write 50 bytes in each position, no matter what you write. Close the file and look at the results. Time to create the file is quite fast (about 0.3"), time to write 10000 times is fast all the same (about 0.03"). Very good, this is the beginnig. Now try something else... b) Open an unexisting file, seek to 1Gb-1byte and write just 1 byte. Now you have another 1Gb file. Follow the next steps exactly same way of case 'a', close the file and look at the results. Time to create the file is the faster you can imagine (about 0.00009") but write time is something you can't believe.... about 90"!!!!! b.1) Open an unexisting file, don't write any byte. Act as before, ramdomizing, seeking and writing, close the file and look at the result. Time to write is long all the same: about 90"!!!!! Ok... this is quite amazing. But there's more! c) Open again the file you crated in case 'a', don't truncate it... randomize again 10000 positions and act as before. You're fast as before, about 0,03" to write 10000 times. This sounds Ok... try another step. d) Now open the file you created in case 'b', don't truncate it... randomize again 10000 positions and act as before. You're slow again and again, but the time is reduced to... 45"!! Maybe, trying again, the time will reduce. I actually wonder why... Any Idea? The following is part of the code I used to test what I told in previuos cases (you'll have to change someting in order to have a clean compilation, I just cut & paste from some source code, sorry). The sample can read and write, in random, ordered or reverse ordered mode, but write only in random order is the clearest test. We tryed using std::fstream but also using directly CreateFile(), WriteFile() and so on the results are the same (even if std::fstream is actually a little slower). Parameters for case 'a' = -f_tempdir_\casea.dat -n10000 -t -p -w Parameters for case 'b' = -f_tempdir_\caseb.dat -n10000 -t -v -w Parameters for case 'b.1' = -f_tempdir_\caseb.dat -n10000 -t -w Parameters for case 'c' = -f_tempdir_\casea.dat -n10000 -w Parameters for case 'd' = -f_tempdir_\caseb.dat -n10000 -w Run the test (and even others) and see... // iotest.cpp : Defines the entry point for the console application. // #include <windows.h> #include <iostream> #include <set> #include <vector> #include "stdafx.h" double RealTime_Microsecs() { LARGE_INTEGER fr = {0, 0}; LARGE_INTEGER ti = {0, 0}; double time = 0.0; QueryPerformanceCounter(&ti); QueryPerformanceFrequency(&fr); time = (double) ti.QuadPart / (double) fr.QuadPart; return time; } int main(int argc, char* argv[]) { std::string sFileName ; size_t stSize, stTimes, stBytes ; int retval = 0 ; char *p = NULL ; char *pPattern = NULL ; char *pReadBuf = NULL ; try { // Default stSize = 1<<30 ; // 1Gb stTimes = 1000 ; stBytes = 50 ; bool bTruncate = false ; bool bPre = false ; bool bPreFast = false ; bool bOrdered = false ; bool bReverse = false ; bool bWriteOnly = false ; // Comsumo i parametri for(int index=1; index < argc; ++index) { if ( '-' != argv[index][0] ) throw ; switch(argv[index][1]) { case 'f': sFileName = argv[index]+2 ; break ; case 's': stSize = xw::str::strtol(argv[index]+2) ; break ; case 'n': stTimes = xw::str::strtol(argv[index]+2) ; break ; case 'b':stBytes = xw::str::strtol(argv[index]+2) ; break ; case 't': bTruncate = true ; break ; case 'p' : bPre = true, bPreFast = false ; break ; case 'v' : bPreFast = true, bPre = false ; break ; case 'o' : bOrdered = true, bReverse = false ; break ; case 'r' : bReverse = true, bOrdered = false ; break ; case 'w' : bWriteOnly = true ; break ; default: throw ; break ; } } if ( sFileName.empty() ) { std::cout << "Usage: -f<File Name> -s<File Size> -n<Number of Reads and Writes> -b<Bytes per Read and Write> -t -p -v -o -r -w" << std::endl ; std::cout << "-t truncates the file, -p pre load the file, -v pre load 'veloce', -o writes in order mode, -r write in reverse order mode, -w Write Only" << std::endl ; std::cout << "Default: 1Gb, 1000 times, 50 bytes" << std::endl ; throw ; } if ( !stSize || !stTimes || !stBytes ) { std::cout << "Invalid Parameters" << std::endl ; return -1 ; } size_t stBestSize = 0x00100000 ; std::fstream fFile ; fFile.open(sFileName.c_str(), std::ios_base::binary|std::ios_base::out|std::ios_base::in|(bTruncate?std::ios_base::trunc:0)) ; p = new char[stBestSize] ; pPattern = new char[stBytes] ; pReadBuf = new char[stBytes] ; memset(p, 0, stBestSize) ; memset(pPattern, (int)(stBytes&0x000000ff), stBytes) ; double dTime = RealTime_Microsecs() ; size_t stCopySize, stSizeToCopy = stSize ; if ( bPre ) { do { stCopySize = std::min(stSizeToCopy, stBestSize) ; fFile.write(p, stCopySize) ; stSizeToCopy -= stCopySize ; } while (stSizeToCopy) ; std::cout << "Creating time is: " << xw::str::itoa(RealTime_Microsecs()-dTime, 5, 'f') << std::endl ; } else if ( bPreFast ) { fFile.seekp(stSize-1) ; fFile.write(p, 1) ; std::cout << "Creating Fast time is: " << xw::str::itoa(RealTime_Microsecs()-dTime, 5, 'f') << std::endl ; } size_t stPos ; ::srand((unsigned int)dTime) ; double dReadTime, dWriteTime ; stCopySize = stTimes ; std::vector<size_t> inVect ; std::vector<size_t> outVect ; std::set<size_t> outSet ; std::set<size_t> inSet ; // Prepare vector and set do { stPos = (size_t)(::rand()<<16) % stSize ; outVect.push_back(stPos) ; outSet.insert(stPos) ; stPos = (size_t)(::rand()<<16) % stSize ; inVect.push_back(stPos) ; inSet.insert(stPos) ; } while (--stCopySize) ; // Write & read using vectors if ( !bReverse && !bOrdered ) { std::vector<size_t>::iterator outI, inI ; outI = outVect.begin() ; inI = inVect.begin() ; stCopySize = stTimes ; dReadTime = 0.0 ; dWriteTime = 0.0 ; do { dTime = RealTime_Microsecs() ; fFile.seekp(*outI) ; fFile.write(pPattern, stBytes) ; dWriteTime += RealTime_Microsecs() - dTime ; ++outI ; if ( !bWriteOnly ) { dTime = RealTime_Microsecs() ; fFile.seekg(*inI) ; fFile.read(pReadBuf, stBytes) ; dReadTime += RealTime_Microsecs() - dTime ; ++inI ; } } while (--stCopySize) ; std::cout << "Write time is " << xw::str::itoa(dWriteTime, 5, 'f') << " (Ave: " << xw::str::itoa(dWriteTime/stTimes, 10, 'f') << ")" << std::endl ; if ( !bWriteOnly ) { std::cout << "Read time is " << xw::str::itoa(dReadTime, 5, 'f') << " (Ave: " << xw::str::itoa(dReadTime/stTimes, 10, 'f') << ")" << std::endl ; } } // End // Write in order if ( bOrdered ) { std::set<size_t>::iterator i = outSet.begin() ; dWriteTime = 0.0 ; stCopySize = 0 ; for(; i != outSet.end(); ++i) { stPos = *i ; dTime = RealTime_Microsecs() ; fFile.seekp(stPos) ; fFile.write(pPattern, stBytes) ; dWriteTime += RealTime_Microsecs() - dTime ; ++stCopySize ; } std::cout << "Ordered Write time is " << xw::str::itoa(dWriteTime, 5, 'f') << " in " << xw::str::itoa(stCopySize) << " (Ave: " << xw::str::itoa(dWriteTime/stCopySize, 10, 'f') << ")" << std::endl ; if ( !bWriteOnly ) { i = inSet.begin() ; dReadTime = 0.0 ; stCopySize = 0 ; for(; i != inSet.end(); ++i) { stPos = *i ; dTime = RealTime_Microsecs() ; fFile.seekg(stPos) ; fFile.read(pReadBuf, stBytes) ; dReadTime += RealTime_Microsecs() - dTime ; ++stCopySize ; } std::cout << "Ordered Read time is " << xw::str::itoa(dReadTime, 5, 'f') << " in " << xw::str::itoa(stCopySize) << " (Ave: " << xw::str::itoa(dReadTime/stCopySize, 10, 'f') << ")" << std::endl ; } }// End // Write in reverse order if ( bReverse ) { std::set<size_t>::reverse_iterator i = outSet.rbegin() ; dWriteTime = 0.0 ; stCopySize = 0 ; for(; i != outSet.rend(); ++i) { stPos = *i ; dTime = RealTime_Microsecs() ; fFile.seekp(stPos) ; fFile.write(pPattern, stBytes) ; dWriteTime += RealTime_Microsecs() - dTime ; ++stCopySize ; } std::cout << "Reverse ordered Write time is " << xw::str::itoa(dWriteTime, 5, 'f') << " in " << xw::str::itoa(stCopySize) << " (Ave: " << xw::str::itoa(dWriteTime/stCopySize, 10, 'f') << ")" << std::endl ; if ( !bWriteOnly ) { i = inSet.rbegin() ; dReadTime = 0.0 ; stCopySize = 0 ; for(; i != inSet.rend(); ++i) { stPos = *i ; dTime = RealTime_Microsecs() ; fFile.seekg(stPos) ; fFile.read(pReadBuf, stBytes) ; dReadTime += RealTime_Microsecs() - dTime ; ++stCopySize ; } std::cout << "Reverse ordered Read time is " << xw::str::itoa(dReadTime, 5, 'f') << " in " << xw::str::itoa(stCopySize) << " (Ave: " << xw::str::itoa(dReadTime/stCopySize, 10, 'f') << ")" << std::endl ; } }// End dTime = RealTime_Microsecs() ; fFile.close() ; std::cout << "Flush/Close Time is " << xw::str::itoa(RealTime_Microsecs()-dTime, 5, 'f') << std::endl ; std::cout << "Program Terminated" << std::endl ; } catch(...) { std::cout << "Something wrong or wrong parameters" << std::endl ; retval = -1 ; } if ( p ) delete []p ; if ( pPattern ) delete []pPattern ; if ( pReadBuf ) delete []pReadBuf ; return retval ; }

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  • Very different IO performance in C/C++

    - by Roberto Tirabassi
    Hi all, I'm a new user and my english is not so good so I hope to be clear. We're facing a performance problem using large files (1GB or more) expecially (as it seems) when you try to grow them in size. Anyway... to verify our sensations we tryed the following (on Win 7 64Bit, 4core, 8GB Ram, 32 bit code compiled with VC2008) a) Open an unexisting file. Write it from the beginning up to 1Gb in 1Mb slots. Now you have a 1Gb file. Now randomize 10000 positions within that file, seek to that position and write 50 bytes in each position, no matter what you write. Close the file and look at the results. Time to create the file is quite fast (about 0.3"), time to write 10000 times is fast all the same (about 0.03"). Very good, this is the beginnig. Now try something else... b) Open an unexisting file, seek to 1Gb-1byte and write just 1 byte. Now you have another 1Gb file. Follow the next steps exactly same way of case 'a', close the file and look at the results. Time to create the file is the faster you can imagine (about 0.00009") but write time is something you can't believe.... about 90"!!!!! b.1) Open an unexisting file, don't write any byte. Act as before, ramdomizing, seeking and writing, close the file and look at the result. Time to write is long all the same: about 90"!!!!! Ok... this is quite amazing. But there's more! c) Open again the file you crated in case 'a', don't truncate it... randomize again 10000 positions and act as before. You're fast as before, about 0,03" to write 10000 times. This sounds Ok... try another step. d) Now open the file you created in case 'b', don't truncate it... randomize again 10000 positions and act as before. You're slow again and again, but the time is reduced to... 45"!! Maybe, trying again, the time will reduce. I actually wonder why... Any Idea? The following is part of the code I used to test what I told in previuos cases (you'll have to change someting in order to have a clean compilation, I just cut & paste from some source code, sorry). The sample can read and write, in random, ordered or reverse ordered mode, but write only in random order is the clearest test. We tryed using std::fstream but also using directly CreateFile(), WriteFile() and so on the results are the same (even if std::fstream is actually a little slower). Parameters for case 'a' = -f_tempdir_\casea.dat -n10000 -t -p -w Parameters for case 'b' = -f_tempdir_\caseb.dat -n10000 -t -v -w Parameters for case 'b.1' = -f_tempdir_\caseb.dat -n10000 -t -w Parameters for case 'c' = -f_tempdir_\casea.dat -n10000 -w Parameters for case 'd' = -f_tempdir_\caseb.dat -n10000 -w Run the test (and even others) and see... // iotest.cpp : Defines the entry point for the console application. // #include <windows.h> #include <iostream> #include <set> #include <vector> #include "stdafx.h" double RealTime_Microsecs() { LARGE_INTEGER fr = {0, 0}; LARGE_INTEGER ti = {0, 0}; double time = 0.0; QueryPerformanceCounter(&ti); QueryPerformanceFrequency(&fr); time = (double) ti.QuadPart / (double) fr.QuadPart; return time; } int main(int argc, char* argv[]) { std::string sFileName ; size_t stSize, stTimes, stBytes ; int retval = 0 ; char *p = NULL ; char *pPattern = NULL ; char *pReadBuf = NULL ; try { // Default stSize = 1<<30 ; // 1Gb stTimes = 1000 ; stBytes = 50 ; bool bTruncate = false ; bool bPre = false ; bool bPreFast = false ; bool bOrdered = false ; bool bReverse = false ; bool bWriteOnly = false ; // Comsumo i parametri for(int index=1; index < argc; ++index) { if ( '-' != argv[index][0] ) throw ; switch(argv[index][1]) { case 'f': sFileName = argv[index]+2 ; break ; case 's': stSize = xw::str::strtol(argv[index]+2) ; break ; case 'n': stTimes = xw::str::strtol(argv[index]+2) ; break ; case 'b':stBytes = xw::str::strtol(argv[index]+2) ; break ; case 't': bTruncate = true ; break ; case 'p' : bPre = true, bPreFast = false ; break ; case 'v' : bPreFast = true, bPre = false ; break ; case 'o' : bOrdered = true, bReverse = false ; break ; case 'r' : bReverse = true, bOrdered = false ; break ; case 'w' : bWriteOnly = true ; break ; default: throw ; break ; } } if ( sFileName.empty() ) { std::cout << "Usage: -f<File Name> -s<File Size> -n<Number of Reads and Writes> -b<Bytes per Read and Write> -t -p -v -o -r -w" << std::endl ; std::cout << "-t truncates the file, -p pre load the file, -v pre load 'veloce', -o writes in order mode, -r write in reverse order mode, -w Write Only" << std::endl ; std::cout << "Default: 1Gb, 1000 times, 50 bytes" << std::endl ; throw ; } if ( !stSize || !stTimes || !stBytes ) { std::cout << "Invalid Parameters" << std::endl ; return -1 ; } size_t stBestSize = 0x00100000 ; std::fstream fFile ; fFile.open(sFileName.c_str(), std::ios_base::binary|std::ios_base::out|std::ios_base::in|(bTruncate?std::ios_base::trunc:0)) ; p = new char[stBestSize] ; pPattern = new char[stBytes] ; pReadBuf = new char[stBytes] ; memset(p, 0, stBestSize) ; memset(pPattern, (int)(stBytes&0x000000ff), stBytes) ; double dTime = RealTime_Microsecs() ; size_t stCopySize, stSizeToCopy = stSize ; if ( bPre ) { do { stCopySize = std::min(stSizeToCopy, stBestSize) ; fFile.write(p, stCopySize) ; stSizeToCopy -= stCopySize ; } while (stSizeToCopy) ; std::cout << "Creating time is: " << xw::str::itoa(RealTime_Microsecs()-dTime, 5, 'f') << std::endl ; } else if ( bPreFast ) { fFile.seekp(stSize-1) ; fFile.write(p, 1) ; std::cout << "Creating Fast time is: " << xw::str::itoa(RealTime_Microsecs()-dTime, 5, 'f') << std::endl ; } size_t stPos ; ::srand((unsigned int)dTime) ; double dReadTime, dWriteTime ; stCopySize = stTimes ; std::vector<size_t> inVect ; std::vector<size_t> outVect ; std::set<size_t> outSet ; std::set<size_t> inSet ; // Prepare vector and set do { stPos = (size_t)(::rand()<<16) % stSize ; outVect.push_back(stPos) ; outSet.insert(stPos) ; stPos = (size_t)(::rand()<<16) % stSize ; inVect.push_back(stPos) ; inSet.insert(stPos) ; } while (--stCopySize) ; // Write & read using vectors if ( !bReverse && !bOrdered ) { std::vector<size_t>::iterator outI, inI ; outI = outVect.begin() ; inI = inVect.begin() ; stCopySize = stTimes ; dReadTime = 0.0 ; dWriteTime = 0.0 ; do { dTime = RealTime_Microsecs() ; fFile.seekp(*outI) ; fFile.write(pPattern, stBytes) ; dWriteTime += RealTime_Microsecs() - dTime ; ++outI ; if ( !bWriteOnly ) { dTime = RealTime_Microsecs() ; fFile.seekg(*inI) ; fFile.read(pReadBuf, stBytes) ; dReadTime += RealTime_Microsecs() - dTime ; ++inI ; } } while (--stCopySize) ; std::cout << "Write time is " << xw::str::itoa(dWriteTime, 5, 'f') << " (Ave: " << xw::str::itoa(dWriteTime/stTimes, 10, 'f') << ")" << std::endl ; if ( !bWriteOnly ) { std::cout << "Read time is " << xw::str::itoa(dReadTime, 5, 'f') << " (Ave: " << xw::str::itoa(dReadTime/stTimes, 10, 'f') << ")" << std::endl ; } } // End // Write in order if ( bOrdered ) { std::set<size_t>::iterator i = outSet.begin() ; dWriteTime = 0.0 ; stCopySize = 0 ; for(; i != outSet.end(); ++i) { stPos = *i ; dTime = RealTime_Microsecs() ; fFile.seekp(stPos) ; fFile.write(pPattern, stBytes) ; dWriteTime += RealTime_Microsecs() - dTime ; ++stCopySize ; } std::cout << "Ordered Write time is " << xw::str::itoa(dWriteTime, 5, 'f') << " in " << xw::str::itoa(stCopySize) << " (Ave: " << xw::str::itoa(dWriteTime/stCopySize, 10, 'f') << ")" << std::endl ; if ( !bWriteOnly ) { i = inSet.begin() ; dReadTime = 0.0 ; stCopySize = 0 ; for(; i != inSet.end(); ++i) { stPos = *i ; dTime = RealTime_Microsecs() ; fFile.seekg(stPos) ; fFile.read(pReadBuf, stBytes) ; dReadTime += RealTime_Microsecs() - dTime ; ++stCopySize ; } std::cout << "Ordered Read time is " << xw::str::itoa(dReadTime, 5, 'f') << " in " << xw::str::itoa(stCopySize) << " (Ave: " << xw::str::itoa(dReadTime/stCopySize, 10, 'f') << ")" << std::endl ; } }// End // Write in reverse order if ( bReverse ) { std::set<size_t>::reverse_iterator i = outSet.rbegin() ; dWriteTime = 0.0 ; stCopySize = 0 ; for(; i != outSet.rend(); ++i) { stPos = *i ; dTime = RealTime_Microsecs() ; fFile.seekp(stPos) ; fFile.write(pPattern, stBytes) ; dWriteTime += RealTime_Microsecs() - dTime ; ++stCopySize ; } std::cout << "Reverse ordered Write time is " << xw::str::itoa(dWriteTime, 5, 'f') << " in " << xw::str::itoa(stCopySize) << " (Ave: " << xw::str::itoa(dWriteTime/stCopySize, 10, 'f') << ")" << std::endl ; if ( !bWriteOnly ) { i = inSet.rbegin() ; dReadTime = 0.0 ; stCopySize = 0 ; for(; i != inSet.rend(); ++i) { stPos = *i ; dTime = RealTime_Microsecs() ; fFile.seekg(stPos) ; fFile.read(pReadBuf, stBytes) ; dReadTime += RealTime_Microsecs() - dTime ; ++stCopySize ; } std::cout << "Reverse ordered Read time is " << xw::str::itoa(dReadTime, 5, 'f') << " in " << xw::str::itoa(stCopySize) << " (Ave: " << xw::str::itoa(dReadTime/stCopySize, 10, 'f') << ")" << std::endl ; } }// End dTime = RealTime_Microsecs() ; fFile.close() ; std::cout << "Flush/Close Time is " << xw::str::itoa(RealTime_Microsecs()-dTime, 5, 'f') << std::endl ; std::cout << "Program Terminated" << std::endl ; } catch(...) { std::cout << "Something wrong or wrong parameters" << std::endl ; retval = -1 ; } if ( p ) delete []p ; if ( pPattern ) delete []pPattern ; if ( pReadBuf ) delete []pReadBuf ; return retval ; }

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