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• Graph drawing for the Web 2.0

  - by tokel

  Hi. There are a lot of chart drawing libraries out there, but what I am looking for is an interactive(!) graph (nodes and edges) drawing library. At best some kind of AJAX, but I am also open for other technologies (Java, Flash). However I would really prefer an AJAX implementation. Also only Open Source framework suggestions please (I already know about yFiles). The thing I have in mind is a bit like GWTUML. That is quite nice already, but misses an API for their graph drawing. It seems that it is an custom implementation for their product. Also some layout algorithms would be nice. Is there really no library around for that task? I wonder a bit as there are so many chart libraries available. Let me emphasize again (seems to be necessary cause of the first two comments): I am NOT looking for another chart library! Regards, Kai P.S. Things I know about already: JUNG (Java), Prefuse (Java), GINY (Java), yFiles (AJAX, but not Open Source). Just another graph library I found (Javascript, not sure if it is still maintained): Graph Gear

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• suggestions for a 3D graph rendering library?

  - by Sandro

  Hello coders! So I'm not sure how stackoverflow friendly this question is since it doesn't have a quick clear cut answer but here we go... I have a java program that generates data for a directed graph. Now I need to render this graph. The data needs to be laid out in 3D, and I want to be able to define which plane an edge lives in. (Each edge will only need to occupy 1 plane of the 3D space). I also need the ability to navigate around the graph. Since I know that this kind of stuff is hard, I'm going shopping. So far I've looked into (In no particular order): JUNG: lacks 3D support Cytoscape: not sure how much I'll be able to define edge drawing, haven't seen a non bio-informatics application of it yet JGraph: I didn't see any 3D applications yet Perfuse: looks promising, does anyone know anything else about it? Gephi: Documentation looks scarce Processing: does this play well with java? I'm also considering doing some combination of opengl + swing rendering to create a 3D graph from multiple 2D graphs. I am also not adverse to the idea of linking from another language Any Ideas? Thank you.

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• How to access members of an rdf list with rdflib (or plain sparql)

  - by tjb

  What is the best way to access the members of an rdf list? I'm using rdflib (python) but an answer given in plain SPARQL is also ok (this type of answer can be used through rdfextras, a rdflib helper library). I'm trying to access the authors of a particular journal article in rdf produced by Zotero (some fields have been removed for brevity): <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:z="http://www.zotero.org/namespaces/export#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:bib="http://purl.org/net/biblio#" xmlns:foaf="http://xmlns.com/foaf/0.1/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:prism="http://prismstandard.org/namespaces/1.2/basic/" xmlns:link="http://purl.org/rss/1.0/modules/link/"> <bib:Article rdf:about="http://www.ncbi.nlm.nih.gov/pubmed/18273724"> <z:itemType>journalArticle</z:itemType> <dcterms:isPartOf rdf:resource="urn:issn:0954-6634"/> <bib:authors> <rdf:Seq> <rdf:li> <foaf:Person> <foaf:surname>Lee</foaf:surname> <foaf:givenname>Hyoun Seung</foaf:givenname> </foaf:Person> </rdf:li> <rdf:li> <foaf:Person> <foaf:surname>Lee</foaf:surname> <foaf:givenname>Jong Hee</foaf:givenname> </foaf:Person> </rdf:li> <rdf:li> <foaf:Person> <foaf:surname>Ahn</foaf:surname> <foaf:givenname>Gun Young</foaf:givenname> </foaf:Person> </rdf:li> <rdf:li> <foaf:Person> <foaf:surname>Lee</foaf:surname> <foaf:givenname>Dong Hun</foaf:givenname> </foaf:Person> </rdf:li> <rdf:li> <foaf:Person> <foaf:surname>Shin</foaf:surname> <foaf:givenname>Jung Won</foaf:givenname> </foaf:Person> </rdf:li> <rdf:li> <foaf:Person> <foaf:surname>Kim</foaf:surname> <foaf:givenname>Dong Hyun</foaf:givenname> </foaf:Person> </rdf:li> <rdf:li> <foaf:Person> <foaf:surname>Chung</foaf:surname> <foaf:givenname>Jin Ho</foaf:givenname> </foaf:Person> </rdf:li> </rdf:Seq> </bib:authors> <dc:title>Fractional photothermolysis for the treatment of acne scars: a report of 27 Korean patients</dc:title> <dcterms:abstract>OBJECTIVES: Atrophic post-acne scarring remains a therapeutically challe *CUT*, erythema and edema. CONCLUSIONS: The 1550-nm erbium-doped FP is associated with significant patient-reported improvement in the appearance of acne scars, with minimal downtime.</dcterms:abstract> <bib:pages>45-49</bib:pages> <dc:date>2008</dc:date> <z:shortTitle>Fractional photothermolysis for the treatment of acne scars</z:shortTitle> <dc:identifier> <dcterms:URI> <rdf:value>http://www.ncbi.nlm.nih.gov/pubmed/18273724</rdf:value> </dcterms:URI> </dc:identifier> <dcterms:dateSubmitted>2010-12-06 11:36:52</dcterms:dateSubmitted> <z:libraryCatalog>NCBI PubMed</z:libraryCatalog> <dc:description>PMID: 18273724</dc:description> </bib:Article> <bib:Journal rdf:about="urn:issn:0954-6634"> <dc:title>The Journal of Dermatological Treatment</dc:title> <prism:volume>19</prism:volume> <prism:number>1</prism:number> <dcterms:alternative>J Dermatolog Treat</dcterms:alternative> <dc:identifier>DOI 10.1080/09546630701691244</dc:identifier> <dc:identifier>ISSN 0954-6634</dc:identifier> </bib:Journal>

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