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  • MPI Barrier C++

    - by aryan
    Dear all, I want to use MPI (MPICH2) on windows. I write this command: MPI_Barrier(MPI_COMM_WORLD); And I expect it blocks all Processors until all group members have called it. But it is not happen. I add a schematic of my code: int a; if(myrank == RootProc) a = 4; MPI_Barrier(MPI_COMM_WORLD); cout << "My Rank = " << myrank << "\ta = " << a << endl; (With 2 processor:) Root processor (0) acts correctly, but processor with rank 1 doesn't know the a variable, so it display -858993460 instead of 4. Can any one help me? Regards

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  • MPI hypercube broadcast error

    - by luvieere
    I've got a one to all broadcast method for a hypercube, written using MPI: one2allbcast(int n, int rank, void *data, int count, MPI_Datatype dtype) { MPI_Status status; int mask, partner; int mask2 = ((1 << n) - 1) ^ (1 << n-1); for (mask = (1 << n-1); mask; mask >>= 1, mask2 >>= 1) { if (rank & mask2 == 0) { partner = rank ^ mask; if (rank & mask) MPI_Recv(data, count, dtype, partner, 99, MPI_COMM_WORLD, &status); else MPI_Send(data, count, dtype, partner, 99, MPI_COMM_WORLD); } } } Upon calling it from main: int main( int argc, char **argv ) { int n, rank; MPI_Init (&argc, &argv); MPI_Comm_size (MPI_COMM_WORLD, &n); MPI_Comm_rank (MPI_COMM_WORLD, &rank); one2allbcast(floor(log(n) / log (2)), rank, "message", sizeof(message), MPI_CHAR); MPI_Finalize(); return 0; } compiling and executing on 8 nodes, I receive a series of errors reporting that processes 1, 3, 5, 7 were stopped before the point of receiving any data: MPI_Recv: process in local group is dead (rank 1, MPI_COMM_WORLD) Rank (1, MPI_COMM_WORLD): Call stack within LAM: Rank (1, MPI_COMM_WORLD): - MPI_Recv() Rank (1, MPI_COMM_WORLD): - main() MPI_Recv: process in local group is dead (rank 3, MPI_COMM_WORLD) Rank (3, MPI_COMM_WORLD): Call stack within LAM: Rank (3, MPI_COMM_WORLD): - MPI_Recv() Rank (3, MPI_COMM_WORLD): - main() MPI_Recv: process in local group is dead (rank 5, MPI_COMM_WORLD) Rank (5, MPI_COMM_WORLD): Call stack within LAM: Rank (5, MPI_COMM_WORLD): - MPI_Recv() Rank (5, MPI_COMM_WORLD): - main() MPI_Recv: process in local group is dead (rank 7, MPI_COMM_WORLD) Rank (7, MPI_COMM_WORLD): Call stack within LAM: Rank (7, MPI_COMM_WORLD): - MPI_Recv() Rank (7, MPI_COMM_WORLD): - main() Where do I go wrong?

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  • MPI Odd/Even Compare-Split Deadlock

    - by erebel55
    I'm trying to write an MPI version of a program that runs an odd/even compare-split operation on n randomly generated elements. Process 0 should generated the elements and send nlocal of them to the other processes, (keeping the first nlocal for itself). From here, process 0 should print out it's results after running the CompareSplit algorithm. Then, receive the results from the other processes run of the algorithm. Finally, print out the results that it has just received. I have a large chunk of this already done, but I'm getting a deadlock that I can't seem to fix. I would greatly appreciate any hints that people could give me. Here is my code http://pastie.org/3742474 Right now I'm pretty sure that the deadlock is coming from the Send/Recv at lines 134 and 151. I've tried changing the Send to use "tag" instead of myrank for the tag parameter..but when I did that I just keep getting a "MPI_ERR_TAG: invalid tag" for some reason. Obviously I would also run the algorithm within the processors 0 but I took that part out for now, until I figure out what is going wrong. Any help is appreciated.

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  • matrix multiplication with MPI [on hold]

    - by user3695701
    I'm working on an assignment on matrix multiplication with MPI. A*B=C. the requirement is that B should be vertically partitioned. Here's what I intend to do: broadcast matrix A to all processes and scatter B into several slices with each slice containing n/p columns. The following code only works when the number of process(p) is 1. when p1(say 2), I got [cluster2:21080] *** Process received signal *** [cluster2:21080] Signal: Segmentation fault (11) [cluster2:21080] Signal code: Address not mapped (1) [cluster2:21080] Failing at address: (nil) [cluster2:21080] [ 0] /lib/libpthread.so.0(+0xf8f0) [0x7f49f38108f0] [cluster2:21080] [ 1] /lib/libc.so.6(memcpy+0xe1) [0x7f49f35024c1] [cluster2:21080] [ 2] /usr/lib/libmpi.so.0(ompi_convertor_unpack+0x121)[0x7f49f47c88e1] [cluster2:21080] [ 3] /usr/lib/openmpi/lib/openmpi/mca_pml_ob1.so(+0x8a26) [0x7f49f0dcea26] [cluster2:21080] [ 4] /usr/lib/openmpi/lib/openmpi/mca_btl_tcp.so(+0x662c) [0x7f49efce462c] [cluster2:21080] [ 5] /usr/lib/libopen-pal.so.0(+0x1ede8) [0x7f49f42e0de8] [cluster2:21080] [ 6] /usr/lib/libopen-pal.so.0(opal_progress+0x99) [0x7f49f42d5369] [cluster2:21080] [ 7] /usr/lib/openmpi/lib/openmpi/mca_pml_ob1.so(+0x5585) [0x7f49f0dcb585] [cluster2:21080] [ 8] /usr/lib/openmpi/lib/openmpi/mca_coll_tuned.so(+0xcc01) [0x7f49eeeb1c01] [cluster2:21080] [ 9] /usr/lib/openmpi/lib/openmpi/mca_coll_tuned.so(+0x266c) [0x7f49eeea766c] [cluster2:21080] [10] /usr/lib/openmpi/lib/openmpi/mca_coll_sync.so(+0x1388) [0x7f49ef0c0388] [cluster2:21080] [11] /usr/lib/libmpi.so.0(MPI_Bcast+0x10e) [0x7f49f47d025e] [cluster2:21080] [12] ./out(main+0x259) [0x401571] [cluster2:21080] [13] /lib/libc.so.6(__libc_start_main+0xfd) [0x7f49f3498c8d] [cluster2:21080] [14] ./out() [0x400f29] [cluster2:21080] *** End of error message *** Can someone help me? Thanks. //matrices A and B //double* A =(double *)malloc(n*n*sizeof(double)); //double* B =(double *)malloc(n*n*sizeof(double)); //code initializing A,B... //n is the size of the matrix //p is the number of processes //myrank is the rank of calling process MPI_Init (&argc, &argv); MPI_Comm_rank(MPI_COMM_WORLD, &myrank); MPI_Comm_size(MPI_COMM_WORLD, &p); //broadcast A to all processes MPI_Bcast (A, n*n, MPI_DOUBLE, 0, MPI_COMM_WORLD); MPI_Datatype tmp_type, col_type; // extract a slice from B MPI_Type_vector(n, num_of_col_per_slice, n, MPI_DOUBLE, &tmp_type); // position of the first (0) and each next (stride * sizeof(double) ) slice MPI_Type_create_resized(tmp_type, 0, n * sizeof(double), &col_type); MPI_Type_commit(&col_type); //scatter a slice of B to each process MPI_Scatter(B, 1, col_type, B+myrank*n/p, n * n/p, MPI_DOUBLE, 0, MPI_COMM_WORLD); //use blas function to calculate A*sliceOfB and store the resulting slice to C cblas_dgemm(CblasRowMajor, CblasNoTrans, CblasNoTrans, n, n/p, n, 1.0, A, n, B+myrank*n/p, n, 0.0, C+myrank*n/p, n); //gather all those resulting slices into C MPI_Gather (C+myrank*n/p, n*n/p, MPI_DOUBLE, C, n*n/p, MPI_DOUBLE, 0, MPI_COMM_WORLD);

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  • MPI signal handling

    - by Seth Johnson
    When using mpirun, is it possible to catch signals (for example, the SIGINT generated by ^C) in the code being run? For example, I'm running a parallelized python code. I can except KeyboardInterrupt to catch those errors when running python blah.py by itself, but I can't when doing mpirun -np 1 python blah.py. Does anyone have a suggestion? Even finding how to catch signals in a C or C++ compiled program would be a helpful start. If I send a signal to the spawned Python processes, they can handle the signals properly; however, signals sent to the parent orterun process (i.e. from exceeding wall time on a cluster, or pressing control-C in a terminal) will kill everything immediately.

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  • MPI difference between Communicator and Group

    - by iamrohitbanga
    I have read the definitions of these terms and my interpretation is that there is a one to one relation between a group and a communicator. A group is a set of processes which wish to communicate with each other and a communicator is an implementation for a group. Is this correct? Why have two different terms if this is so?

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  • MPI - passing function as a parameter

    - by Hmyzak
    Hi, is there any how how to pass function as a parameter when starting program in C? I am implementing app for integral aproximation, and all I need is to type a function I want to work with, when starting app. I tried (e.g.) 2/(2+2*x), but I only get back "2". When I write to application directly, there is no problem. Is there any simple way of getting this? Maybe redistribute it to more parametres? Like app.c number number*x number *x*x number *x*x*x... ? Thanks

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  • Best ways to teach a beginner to program?

    - by Justin Standard
    Original Question I am currently engaged in teaching my brother to program. He is a total beginner, but very smart. (And he actually wants to learn). I've noticed that some of our sessions have gotten bogged down in minor details, and I don't feel I've been very organized. (But the answers to this post have helped a lot.) What can I do better to teach him effectively? Is there a logical order that I can use to run through concept by concept? Are there complexities I should avoid till later? The language we are working with is Python, but advice in any language is welcome. How to Help If you have good ones please add the following in your answer: Beginner Exercises and Project Ideas Resources for teaching beginners Screencasts / blog posts / free e-books Print books that are good for beginners Please describe the resource with a link to it so I can take a look. I want everyone to know that I have definitely been using some of these ideas. Your submissions will be aggregated in this post. Online Resources for teaching beginners: A Gentle Introduction to Programming Using Python How to Think Like a Computer Scientist Alice: a 3d program for beginners Scratch (A system to develop programming skills) How To Design Programs Structure and Interpretation of Computer Programs Learn To Program Robert Read's How To Be a Programmer Microsoft XNA Spawning the Next Generation of Hackers COMP1917 Higher Computing lectures by Richard Buckland (requires iTunes) Dive into Python Python Wikibook Project Euler - sample problems (mostly mathematical) pygame - an easy python library for creating games Create Your Own Games With Python ebook Foundations of Programming for a next step beyond basics. Squeak by Example Recommended Print Books for teaching beginners Accelerated C++ Python Programming for the Absolute Beginner Code by Charles Petzold

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  • assembly registers beginner

    - by Dnaiel
    So I've been getting into a bit of assembly lately and I'm a beginner so i was wondering if someone could clarify something. I take it every process has it's own set of registers, and each thread can modify these registers right?. How then do multiple threads use the same registers without causing clashes? Or does each thread have its own set of registers?

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  • C# beginner help

    - by ThickBook
    Can you help in this example? I am a beginner. Thanks using System; class Program { public static void Mian(string[] args) { Console.Write("Your Name?: "); string name = Console.Read(); Console.WriteLine("Welcome {0}", name); } }

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  • C++ OpenSource project for beginner programmer?

    - by VeminZ
    I`m a beginner C++ programmer. And I want to pursue my career in system- and driver-programming. Can you suggest me an opensource projects to I improve my skills in low-level development? I am looking for a project with the following characteristic: - on C\C++ language based - a small project with a small amount of code, yet - UNIX-based systems designed Do you know that something like this?

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  • What is the best beginner's guide to PHP?

    - by Ami
    I work a lot with Wordpress and I'm trying to customize some of my themes, all of which are written in PHP. I've been trying to learn this language for a little while, but I'm not an experienced coder (My knowledge only includes HTML with some CSS). Can you recommend a guide/book/tutorial/etc that would work for a beginner?

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  • Beginner learning assembly preserving esp after function calls

    - by Daniel
    I'm a beginner learning some assembly, when preserving the ESP register before a function call does it matter if you do it by adding or subtracting? hard to explain, consider the following mov esi, esp sub esp, 12 // on 32bit OS this would mean that there are 3 arguments to the function // push, function call etc cmp esi, esp // should be the same or mov esi, esp // push, function call etc add esp, 12 cmp esi, esp // should be the same Also if for some reason the cmp fails, is it safe to do mov esp, esi to re-align the stack? Thanks EDIT: Also how come i need to do this for a call like sprintf, but MessageBox seems to fix ESP for me? How am i to know what function needs this and what doesn't?

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  • I am a beginner to C and this is the dumbest question..Confused about getchar() function

    - by happysoul
    Sorry if I am not supposed to post beginner level questions here..I am new to this site Please read the code below first I am confused about getchar() 's role in the following code.. I mean I know its helping me see the output window which will only be closed when I press enter key So getchar() is basically waiting for me to press enter and then reads a single character .. Now my question.. what is that single character this function is reading ?? I did not press any key from the keyboard for it to read Now when its not reading anything..why it does not give an error saying hey u didn't enter anything for me to read ..lol...(told u its a dumb question) #include <stdio.h> int main() { printf( "blah \n" ); getchar(); return 0; }

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  • Searching for a Kohana Beginner's Tutorial for PHP

    - by Andreas Grech
    I am going to try to build a PHP website using a framework for the first time, and after some research here and there, I've decided to try to use Kohana I downloaded the source from their website, and ran the downloaded stuff on my web server, and was then greeted with a 'Welcome to Kohana!' page, and nothing more... I've tried to find some beginner tutorials on the web as regard this particular framework, but to my surprise, came up with almost nothing (only this one, but it's not a great deal of help) I am not new to PHP and neither am I new to the MVC concept, but I am very new to PHP Frameworks...so can anyone point me to a Kohana tutorial somewhere on the web that will help me get started in building my website using this framework, from scratch ? P.S. As I said, I want a beginners tutorial as regarding this case. [UPDATE] I am currently reading the Official Guide...we'll see how that goes.

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  • Understanding Thread/BeginInvoke? [beginner]

    - by Moberg
    Consider the code: class Work { public void DoStuff(string s) { Console.WriteLine(s); // .. whatever } } class Master { private readonly Work work = new Work(); public void Execute() { string hello = "hello"; // (1) is this an ugly hack ? var thread1 = new Thread(new ParameterizedThreadStart(o => this.work.DoStuff((string)o))); thread1.Start(hello); thread1.Join(); // (2) is this similar to the one above? new Action<string>(s => this.work.DoStuff(s)).BeginInvoke(hello, null, null); } } Is (1) an acceptable way of easy starting some work in a seperate thread? If not a better alternative would be much appreciated. Is (2) doing the same? I guess what I ask is if a new thread is started, or.. Hope you can help a beginner to a better understanding :) /Moberg

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  • Pythonic mapping of an array (Beginner)

    - by scott_karana
    Hey StackOverflow, I've got a question related to a beginner Python snippet I've written to introduce myself to the language. It's an admittedly trivial early effort, but I'm still wondering how I could have written it more elegantly. The program outputs NATO phoenetic readable versions of an argument, such "H2O" - "Hotel 2 Oscar", or (lacking an argument) just outputs the whole alphabet. I mainly use it for calling in MAC addresses and IQNs, but it's useful for other phone support too. Here's the body of the relevant portion of the program: #!/usr/bin/env python import sys nato = { "a": 'Alfa', "b": 'Bravo', "c": 'Charlie', "d": 'Delta', "e": 'Echo', "f": 'Foxtrot', "g": 'Golf', "h": 'Hotel', "i": 'India', "j": 'Juliet', "k": 'Kilo', "l": 'Lima', "m": 'Mike', "n": 'November', "o": 'Oscar', "p": 'Papa', "q": 'Quebec', "r": 'Romeo', "s": 'Sierra', "t": 'Tango', "u": 'Uniform', "v": 'Victor', "w": 'Whiskey', "x": 'Xray', "y": 'Yankee', "z": 'Zulu', } if len(sys.argv) < 2: for n in nato.keys(): print nato[n] else: # if sys.argv[1] == "-i" # TODO for char in sys.argv[1].lower(): if char in nato: print nato[char], else: print char, As I mentioned, I just want to see suggestions for a more elegant way to code this. My first guess was to use a list comprehension along the lines of [nato[x] for x in sys.argv[1].lower() if x in nato], but that doesn't allow me to output any non-alphabetic characters. My next guess was to use map, but I couldn't format any lambdas that didn't suffer from the same corner case. Any suggestions? Maybe something with first-class functions? Messing with Array's guts? This seems like it could almost be a Code Golf question, but I feel like I'm just overthinking :)

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  • Beginner problems with references to arrays in python 3.1.1

    - by Protean
    As part of the last assignment in a beginner python programing class, I have been assigned a traveling sales man problem. I settled on a recursive function to find each permutation and the sum of the distances between the destinations, however, I am have a lot of problems with references. Arrays in different instances of the Permute and Main functions of TSP seem to be pointing to the same reference. from math import sqrt class TSP: def __init__(self): self.CartisianCoordinates = [['A',[1,1]], ['B',[2,2]], ['C',[2,1]], ['D',[1,2]], ['E',[3,3]]] self.Array = [] self.Max = 0 self.StoredList = ['',0] def Distance(self, i1, i2): x1 = self.CartisianCoordinates[i1][1][0] y1 = self.CartisianCoordinates[i1][1][1] x2 = self.CartisianCoordinates[i2][1][0] y2 = self.CartisianCoordinates[i2][1][1] return sqrt(pow((x2 - x1), 2) + pow((y2 - y1), 2)) def Evaluate(self): temparray = [] Data = [] for i in range(len(self.CartisianCoordinates)): Data.append([]) for i1 in range(len(self.CartisianCoordinates)): for i2 in range(len(self.CartisianCoordinates)): if i1 != i2: temparray.append(self.Distance(i1, i2)) else: temparray.append('X') Data[i1] = temparray temparray = [] self.Array = Data self.Max = len(Data) def Permute(self,varray,index,vcarry,mcarry): #Problem Class array = varray[:] carry = vcarry[:] for i in range(self.Max): print ('ARRAY:', array) print (index,i,carry,array[index][i]) if array[index][i] != 'X': carry[0] += self.CartisianCoordinates[i][0] carry[1] += array[index][i] if len(carry) != self.Max: temparray = array[:] for j in range(self.Max):temparray[j][i] = 'X' index = i mcarry += self.Permute(temparray,index,carry,mcarry) else: return mcarry print ('pass',mcarry) return mcarry def Main(self): out = [] self.Evaluate() for i in range(self.Max): array = self.Array[:] #array appears to maintain the same reference after each copy, resulting in an incorrect array being passed to Permute after the first iteration. print (self.Array[:]) for j in range(self.Max):array[j][i] = 'X' print('I:', i, array) out.append(self.Permute(array,i,[str(self.CartisianCoordinates[i][0]),0],[])) return out SalesPerson = TSP() print(SalesPerson.Main()) It would be greatly appreciated if you could provide me with help in solving the reference problems I am having. Thank you.

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  • Slides and code for MPI Cluster Debugger

    I've blogged before about the MPI Cluster Debugger in VS2010 that facilitates launching the application on the cluster and attaching the debugger (btw, a shorter version of the screencast I link to there, is here).There have been requests for the code I use in the screencast, so please find a ZIP with that code.There have also been requests for a PowerPoint deck to use when showing this feature to others. Feel free to download some slides I threw together the other day. Comments about this post welcome at the original blog.

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  • IO Profiling of Applications: MPI Apps

    <b>Linux Magazine:</b> "In the last article we looked at using strace to examine the IO patterns of simple serial applications. In the High Performance Computing (HPC) world, applications use MPI (Message Passing Interface) to create parallel applications. This time around we discuss how to attack parallel applications using strace."

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  • Possible to distribute an MPI (C++) program accross the internet rather than within a LAN cluster?

    - by Ben
    Hi there, I've written some MPI code which works flawlessly on large clusters. Each node in the cluster has the same cpu architecture and has access to a networked (i.e. 'common') file system (so that each node can excecute the actual binary). But consider this scenario: I have a machine in my office with a dual core processor (intel). I have a machine at home with a dual core processor (amd). Both machines run linux, and both machines can successfully compile and run the MPI code locally (i.e. using 2 cores). Now, is it possible to link the two machines together via MPI, so that I can utilise all 4 cores, bearing in mind the different architectures, and bearing in mind the fact that there are no shared (networked) filesystems? If so, how? Thanks, Ben.

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