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  • Message "Sparse file not allowed" after succesfull install without swap-partition

    - by FUZxxl
    I've installed Ubuntu without creating a swap partition and with / on a btrfs.# Now I get the message "Sparse file is not allowed" on each boot. This message appears before the splash-screen. Is there a way to kill this warning? # I use some programs that tend to get havoc on memory usage. To prevent them from killing my system, I let the OOM killer do the rest when out of memory rather than making my system unreasonably slow by excessive swapping.

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  • How do I get .NET to garbage collect aggressively?

    - by mmr
    I have an application that is used in image processing, and I find myself typically allocating arrays in the 4000x4000 ushort size, as well as the occasional float and the like. Currently, the .NET framework tends to crash in this app apparently randomly, almost always with an out of memory error. 32mb is not a huge declaration, but if .NET is fragmenting memory, then it's very possible that such large continuous allocations aren't behaving as expected. Is there a way to tell the garbage collector to be more aggressive, or to defrag memory (if that's the problem)? I realize that there's the GC.Collect and GC.WaitForPendingFinalizers calls, and I've sprinkled them pretty liberally through my code, but I'm still getting the errors. It may be because I'm calling dll routines that use native code a lot, but I'm not sure. I've gone over that C++ code, and make sure that any memory I declare I delete, but still I get these C# crashes, so I'm pretty sure it's not there. I wonder if the C++ calls could be interfering with the GC, making it leave behind memory because it once interacted with a native call-- is that possible? If so, can I turn that functionality off? EDIT: Here is some very specific code that will cause the crash. According to this SO question, I do not need to be disposing of the BitmapSource objects here. Here is the naive version, no GC.Collects in it. It generally crashes on iteration 4 to 10 of the undo procedure. This code replaces the constructor in a blank WPF project, since I'm using WPF. I do the wackiness with the bitmapsource because of the limitations I explained in my answer to @dthorpe below as well as the requirements listed in this SO question. public partial class Window1 : Window { public Window1() { InitializeComponent(); //Attempts to create an OOM crash //to do so, mimic minute croppings of an 'image' (ushort array), and then undoing the crops int theRows = 4000, currRows; int theColumns = 4000, currCols; int theMaxChange = 30; int i; List<ushort[]> theList = new List<ushort[]>();//the list of images in the undo/redo stack byte[] displayBuffer = null;//the buffer used as a bitmap source BitmapSource theSource = null; for (i = 0; i < theMaxChange; i++) { currRows = theRows - i; currCols = theColumns - i; theList.Add(new ushort[(theRows - i) * (theColumns - i)]); displayBuffer = new byte[theList[i].Length]; theSource = BitmapSource.Create(currCols, currRows, 96, 96, PixelFormats.Gray8, null, displayBuffer, (currCols * PixelFormats.Gray8.BitsPerPixel + 7) / 8); System.Console.WriteLine("Got to change " + i.ToString()); System.Threading.Thread.Sleep(100); } //should get here. If not, then theMaxChange is too large. //Now, go back up the undo stack. for (i = theMaxChange - 1; i >= 0; i--) { displayBuffer = new byte[theList[i].Length]; theSource = BitmapSource.Create((theColumns - i), (theRows - i), 96, 96, PixelFormats.Gray8, null, displayBuffer, ((theColumns - i) * PixelFormats.Gray8.BitsPerPixel + 7) / 8); System.Console.WriteLine("Got to undo change " + i.ToString()); System.Threading.Thread.Sleep(100); } } } Now, if I'm explicit in calling the garbage collector, I have to wrap the entire code in an outer loop to cause the OOM crash. For me, this tends to happen around x = 50 or so: public partial class Window1 : Window { public Window1() { InitializeComponent(); //Attempts to create an OOM crash //to do so, mimic minute croppings of an 'image' (ushort array), and then undoing the crops for (int x = 0; x < 1000; x++){ int theRows = 4000, currRows; int theColumns = 4000, currCols; int theMaxChange = 30; int i; List<ushort[]> theList = new List<ushort[]>();//the list of images in the undo/redo stack byte[] displayBuffer = null;//the buffer used as a bitmap source BitmapSource theSource = null; for (i = 0; i < theMaxChange; i++) { currRows = theRows - i; currCols = theColumns - i; theList.Add(new ushort[(theRows - i) * (theColumns - i)]); displayBuffer = new byte[theList[i].Length]; theSource = BitmapSource.Create(currCols, currRows, 96, 96, PixelFormats.Gray8, null, displayBuffer, (currCols * PixelFormats.Gray8.BitsPerPixel + 7) / 8); } //should get here. If not, then theMaxChange is too large. //Now, go back up the undo stack. for (i = theMaxChange - 1; i >= 0; i--) { displayBuffer = new byte[theList[i].Length]; theSource = BitmapSource.Create((theColumns - i), (theRows - i), 96, 96, PixelFormats.Gray8, null, displayBuffer, ((theColumns - i) * PixelFormats.Gray8.BitsPerPixel + 7) / 8); GC.WaitForPendingFinalizers();//force gc to collect, because we're in scenario 2, lots of large random changes GC.Collect(); } System.Console.WriteLine("Got to changelist " + x.ToString()); System.Threading.Thread.Sleep(100); } } } If I'm mishandling memory in either scenario, if there's something I should spot with a profiler, let me know. That's a pretty simple routine there. Unfortunately, it looks like @Kevin's answer is right-- this is a bug in .NET and how .NET handles objects larger than 85k. This situation strikes me as exceedingly strange; could Powerpoint be rewritten in .NET with this kind of limitation, or any of the other Office suite applications? 85k does not seem to me to be a whole lot of space, and I'd also think that any program that uses so-called 'large' allocations frequently would become unstable within a matter of days to weeks when using .NET. EDIT: It looks like Kevin is right, this is a limitation of .NET's GC. For those who don't want to follow the entire thread, .NET has four GC heaps: gen0, gen1, gen2, and LOH (Large Object Heap). Everything that's 85k or smaller goes on one of the first three heaps, depending on creation time (moved from gen0 to gen1 to gen2, etc). Objects larger than 85k get placed on the LOH. The LOH is never compacted, so eventually, allocations of the type I'm doing will eventually cause an OOM error as objects get scattered about that memory space. We've found that moving to .NET 4.0 does help the problem somewhat, delaying the exception, but not preventing it. To be honest, this feels a bit like the 640k barrier-- 85k ought to be enough for any user application (to paraphrase this video of a discussion of the GC in .NET). For the record, Java does not exhibit this behavior with its GC.

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  • How does landscape calculate memory usage?

    - by David Planella
    I'm trying to debug an OOM situation in an Ubuntu 12.04 server, and looking at the Memory graphs in Landscape, I noticed that there wasn't any serious memory usage spike. Then I looked at the output of the free command and I wasn't quite sure how both memory usage results relate to each other. Here's landscape's output on the server: $ landscape-sysinfo System load: 0.0 Processes: 93 Usage of /: 5.6% of 19.48GB Users logged in: 1 Memory usage: 26% IP address for eth0: - Swap usage: 2% Then I ran the free command and I get: $ free -m total used free shared buffers cached Mem: 486 381 105 0 4 165 -/+ buffers/cache: 212 274 Swap: 255 7 248 I can understand the 2% swap usage, but where does the 26% memory usage come from?

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  • How does landscape calculate free memory?

    - by David Planella
    I'm trying to debug an OOM situation in an Ubuntu 12.04 server, and looking at the Memory graphs in Landscape, I noticed that there wasn't any serious memory usage spike spike. Then I looked at the output of the free command and I wasn't quite sure how both memory usage results relate to each other. Here's landscape's output on the server: $ landscape-sysinfo System load: 0.0 Processes: 93 Usage of /: 5.6% of 19.48GB Users logged in: 1 Memory usage: 26% IP address for eth0: - Swap usage: 2% Then I run the free command and I get: $ free -m total used free shared buffers cached Mem: 486 381 105 0 4 165 -/+ buffers/cache: 212 274 Swap: 255 7 248 I can understand the 2% swap usage, but where does the 26% memory usage come from?

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  • How to start /usr/bin/bitcoind on boot?

    - by André
    I'm trying to get /usr/bin/bitcoind to start on boot but without success. I have this script on /etc/init/bitcoind.conf description "bitcoind" start on filesystem stop on runlevel [!2345] oom never expect daemon respawn respawn limit 10 60 # 10 times in 60 seconds script user=andre home=/home/$user cmd=/usr/bin/bitcoind pidfile=$home/.bitcoin/bitcoind.pid # Don't change anything below here unless you know what you're doing [[ -e $pidfile && ! -d "/proc/$(cat $pidfile)" ]] && rm $pidfile [[ -e $pidfile && "$(cat /proc/$(cat $pidfile)/cmdline)" != $cmd* ]] && rm $pidfile exec start-stop-daemon --start -c $user --chdir $home --pidfile $pidfile --starta $cmd -b -m end script After creating this script I've run the command: sudo initctl reload-configuration When I restart Ubuntu the "bitcoind" does not start. I only can start "bitcoind" running manually the command: sudo start bitcoind Any clues on how to start "bitcoind" on boot?

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  • Memory dump much smaller than available memory

    - by Daniel
    I have a Tomcat Application Server that is configured to create a memory dump on OOM, and it is started with -Xmx1024M, so a Gigabyte should be available to him. Now I found one such dump and it contains only 260MB of unretained memory. How is it possible that the dump is so much smaller than the size he should have available?

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  • Help needed wit the XPath statement for Selenium test

    - by mgeorge
    I am testing a calendar component using selenium.In my test i want to click on the current date.Please help me with the XPath statement for doing that.I am adding the HTML for the calender component <input id="event_date" type="text" on="click then l:show.event.calendar" style="border: 1px solid rgb(187, 187, 187); width: 100px;" fieldset="new_event" decorator="redbox" validator="date"/> <img id="app_136" style="position: relative; top: 2px;" on="click then l:show.event.calendar" src="images/calendar.png"/> <div id="app_137" style="margin: 0pt; padding: 0pt;"> <div id="app_calendar_2" class="yui-calcontainer single withtitle" style="position: absolute; z-index: 1000;"> <div class="title">Select Event Date</div> <table id="app_calendar_2_cal" class="yui-calendar y2010" cellspacing="0"> <thead> <tr> </tr> <tr class="calweekdayrow"> <th class="calweekdaycell">Su</th> <th class="calweekdaycell">Mo</th> <th class="calweekdaycell">Tu</th> <th class="calweekdaycell">We</th> <th class="calweekdaycell">Th</th> <th class="calweekdaycell">Fr</th> <th class="calweekdaycell">Sa</th> </tr> </thead> <tbody class="m6 calbody"> <tr class="w22"> <td id="app_calendar_2_cal_cell0" class="calcell oom calcelltop calcellleft">30</td> <td id="app_calendar_2_cal_cell1" class="calcell oom calcelltop">31</td> <td id="app_calendar_2_cal_cell2" class="calcell wd2 d1 selectable calcelltop"> </td> <td id="app_calendar_2_cal_cell3" class="calcell wd3 d2 today selectable calcelltop selected"> <a class="selector" href="#">2</a> </td> I want to click the date component described in <td id="app_calendar_2_cal_cell3" class="calcell wd3 d2 today selectable calcelltop selected"> <a class="selector" href="#">2</a> </td> Thanks in advance mgeorge

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  • Amazon EC2 Instance - m1.medium Ubuntu 12.04 - Started to crash three days ago

    - by Joy
    The environment: Amazon EC2 Instance - m1.medium Ubuntu 12.04 Apache 2.2.22 - Running a Drupal Site Using MySQL DB Server RAM info: ~$ free -gt total used free shared buffers cached Mem: 3 1 2 0 0 0 -/+ buffers/cache: 0 2 Swap: 0 0 0 Total: 3 1 2 Hard drive info: Filesystem Size Used Avail Use% Mounted on /dev/xvda1 7.9G 4.7G 2.9G 62% / udev 1.9G 8.0K 1.9G 1% /dev tmpfs 751M 180K 750M 1% /run none 5.0M 0 5.0M 0% /run/lock none 1.9G 0 1.9G 0% /run/shm /dev/xvdb 394G 199M 374G 1% /mnt The problem About two days ago the site started failing becaue the MySQL server was shut down by Apache with the following message: kernel: [2963685.664359] [31716] 106 31716 226946 22748 0 0 0 mysqld kernel: [2963685.664730] Out of memory: Kill process 31716 (mysqld) score 23 or sacrifice child kernel: [2963685.664764] Killed process 31716 (mysqld) total-vm:907784kB, anon-rss:90992kB, file-rss:0kB kernel: [2963686.153608] init: mysql main process (31716) killed by KILL signal kernel: [2963686.169294] init: mysql main process ended, respawning That states that the VM was occupying 0.9GB, but my Ram has 2GB free, so 1GB was still left free. I understand that in Linux applications can allocate more memory than physically available. I don't know if this is the problme, it's the first time that it has started to happen. Obviously, the MySQL server tries to restart, but there's no memory for it apparently and it won't restart. Here is its error log: Plugin 'FEDERATED' is disabled. The InnoDB memory heap is disabled Mutexes and rw_locks use GCC atomic builtins Compressed tables use zlib 1.2.3.4 Initializing buffer pool, size = 128.0M InnoDB: mmap(137363456 bytes) failed; errno 12 Completed initialization of buffer pool Fatal error: cannot allocate memory for the buffer pool Plugin 'InnoDB' init function returned error. Plugin 'InnoDB' registration as a STORAGE ENGINE failed. Unknown/unsupported storage engine: InnoDB [ERROR] Aborting [Note] /usr/sbin/mysqld: Shutdown complete I simply restarted the Mysql service. About two hours later it happened again. I restarted it. Then it happened again 9 hours later. So then I thought of the MaxClients parameter of apache.conf, so I went to check it out. It was set at 150. I decided to drop it down to 60. As so: <IfModule mpm_prefork_module> ... MaxClients 60 </IfModule> <IfModule mpm_worker_module> ... MaxClients 60 </IfModule> <IfModule mpm_event_module> ... MaxClients 60 </IfModule> Once I did that, I had the apache2 service restart and it all went smoothly for 3/4 of a day. Since at night the MySQL service shut down once again, but this time it wasn't killed by the Apache2 service. Instead it called the OOM-Killer with the following message: kernel: [3104680.005312] mysqld invoked oom-killer: gfp_mask=0x201da, order=0, oom_adj=0, oom_score_adj=0 kernel: [3104680.005351] [<ffffffff81119795>] oom_kill_process+0x85/0xb0 kernel: [3104680.548860] init: mysql main process (30821) killed by KILL signal Now I'm out of ideas. Some articles state that the ideal thing to do is change the kernel behaviour with the following (include it to the file /etc/sysctl.conf ) vm.overcommit_memory = 2 vm.overcommit_ratio = 80 So no overcommits will take place. I'm wondering if this is the way to go? Keep in mind I'm no server administrator, I have basic knowldege. Thanks a bunch in advance.

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  • Running out of LowMem with Ubuntu PAE Kernel and 32GB of RAM

    - by magneticMonster
    I'm running a Java data import process on a 32-bit Ubuntu 10 PAE kernel machine. After running the process for a while, the oom-killer zaps my Java process. After some Googling and digging through docs, it looks like the system is running out of LowMem. I started the process for the third time and am watching free -lm show me Low: 464 386 77 with the free value (77MB) slowly decreasing. Why am I running out of lowmem and how do I increase it? Some details: $ cat /proc/sys/vm/lowmem_reserve_ratio 256 256 32 $ free -lm total used free shared buffers cached Mem: 32086 24611 7475 0 0 24012 Low: 464 407 57 High: 31621 24204 7417 -/+ buffers/cache: 598 31487 Swap: 2047 0 2047

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  • Monitor Processes' Memory Usage

    - by Alvin Sim
    We have an IBM P series box running AIX 5.3. This is our application server, whereby our J2EE application is running in Oracle's Applications Server (version 10g r2). At around 11pm till the next day 7am, we have shell scripts running, which executes Java class programs. Recently, this server has been experiencing some high memory usage, which caused some of the Java class programs throwing "Out of memory" exception . We normally use NMON to monitor the server's resources, such as CPU, I/O, memory, etc. But because of this OOM issue, we would like to know throughout the day, what are the processes which are running and how much memory each process consumed. NMON is not able to show this. Even with the "-T" parameter, it only shows the top processes and not all. Is there any thing we can use to monitor all the processes' memory?

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  • Proper upstart script for hamachi?

    - by ALQ
    I've been looking for a script to supervise hamachi and mostly got it to work except for the part that daemonizes hamachid. The following script works but is not perfect. I'm not familiar with upstart internals to debug this further. description "Hamachi VPN" author "Alexis Le-Quoc <[email protected]>" start on (net-device-up and local-filesystems and runlevel [2345]) stop on runlevel [016] respawn oom never env DAEMON=/opt/logmein-hamachi/bin/hamachid pre-start script [ -x "$DAEMON" ] end script # should really be: # expect daemon # exec $DAEMON exec $DAEMON debug > /dev/null

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  • Running out of LowMem with Ubuntu PAE Kernel and 32GB of RAM

    - by magneticMonster
    I'm running a Java data import process on a 32-bit Ubuntu 10 PAE kernel machine. After running the process for a while, the oom-killer zaps my Java process. After some Googling and digging through docs, it looks like the system is running out of LowMem. I started the process for the third time and am watching free -lm show me Low: 464 386 77 with the free value (77MB) slowly decreasing. Why am I running out of lowmem and how do I increase it? Some details: $ cat /proc/sys/vm/lowmem_reserve_ratio 256 256 32 $ free -lm total used free shared buffers cached Mem: 32086 24611 7475 0 0 24012 Low: 464 407 57 High: 31621 24204 7417 -/+ buffers/cache: 598 31487 Swap: 2047 0 2047

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  • php-cgi got SIGKILL on burst.net VPS?

    - by Shawn
    I got an VPS at burst.net, very cheap one, but this doesn't matter. The strange behavior of it is, the php-cgi process, which started using lighthttpd's spawn-cgi, dies every a few minutes. however, other processes are fine and great, even include a java process, and I'm sure there is no "out of memory" issue, so it's not killed by OOM killer. I used strace to trace the process, and found out it was killed by SIGKILL, hence no single log was left on the disk, just dies suddenly. Is there anyway I can find out what process/thing sent the SIGKILL to the poor php process? Filed a ticket with the vendor, but they said they won't care. strace -p 7176 Process 7176 attached - interrupt to quit wait4(-1, <unfinished ...> +++ killed by SIGKILL +++

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  • links for 2010-05-10

    - by Bob Rhubart
    Announcing the MOS WCI "Community" (World of WebCenter Interaction) In this community you'll find a product related discussion forum moderated by Oracle WebCenter Interaction support engineers, recommended tips and tricks, links to knowledge base articles and best practices for setting up and administering up your environment. We hope you'll take a minute to have a look through the community. (tags: oracle otn webcenter enterprise2.0) Jason Williamson: Tuxedo Runtime for CICS and Batch Webcast "The notion that mainframes can be rehosted on open system is pretty well accepted. There are still some hold out CxO's who don't believe it, but those guys typically are not really looking to migrate anyway and don't take an honest look at the case studies, history and TPC reports." Jason Williamson (tags: oracle otn entarch tuxedo) Tom Hofte: Analyzing Out-Of-Memory issues in WebLogic 10.3.3 with JRockit 4.0 Flight Recorder Tom Hofte shows you "how to capture automatically an overall WLS system image, including a JFR image, after an out-of-memory (OOM) exception has occured in the JVM hosting WLS 10.3.3." (tags: oracle otn weblogic soa java) Install Control Center Agent on Oracle Application Server (Oracle Warehouse Builder (OWB) Weblog) Qianqian Wu show you how to Install and Configure the Application Server; Deploy the Control Center Agent to the Application Server; Optional Configuration Tasks (tags: oracle otn bi datawarehousing) Frank Buytendijk: BI and EPM Landscape "Organizations are getting more serious about ecosystem thinking. They do not evaluate single tools anymore for different application areas, but buy into a complete ecosystem of hardware, software and services. The best ecosystem is the one that offers the most options, in environments where the uncertainty is high and investments are hard to reverse. The key to successfully managing such an environment is middleware, and BI and EPM become increasingly middleware intensive. In fact, given the horizontal nature of BI and EPM, sitting on top of all business functions and applications, you could call them 'upperware.'" -- Frank Buytendijk (tags: oracle otn enterprisearchitecture bi)

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  • how to generate large image in compact framework

    - by Buthrakaur
    I need to generate large images (A4 image at 200 DPI, PNG format would be fine) in my compact framework application. This is impossible to do in standard way due to memory limitations (such big image will throw OOMException). Is there any library which offers file-backed stream image generation? Or I could generate many smaller stripes of images (each stripe representing a row of the large image) using standard Bitmap approach, but I need to merge them together afterwards - is there any method how to merge many smaller images into one large without having to instantiate large Bitmap instance (which would again cause OOM)?

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  • Creating Pages with unique PageMaps

    - by Michael Krauklis
    I have a wicket Application that has long lived Pages. I would like each instance of this Page to be created with a unique PageMap for reasons I won't get into here, but when I try to specify a PageMap on the constructor of my Page I end up getting OOM and StackOverflow errors. Here is the code: public <CTOR>() { super(Session.get().newPageMap("" + System.currentTimeMillis())); ... I'm using a custom BookmarkablePageLink (custom in that it does not pass on the current PageMap name to the new Page) to effectively abandon the old Page/PageMap and create a new one with a new PageMap. The errors seem to be coming from page serialization after only two or three pages have been created. Can anyone find issue with this approach?

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  • SQLAuthority News – Reliving TechEd with Vinod Kumar at Bangalore User Groups

    - by pinaldave
    TechEd India 2012 was held in Bangalore last March 21 to 23, 2012. Just like every year, this event is bigger, grander and inspiring. Here is my blog post reviewing the event SQLAuthority News – #TechEdIn – TechEd India 2012 Memories and Photos. For me this is family event – I get to meet my friends who are dear as my family. I like to call User Groups as family too. Family shares life’s personal happiness and experience – the same way User Group shares professional experiences and quite often UG members become just like family member. When I learned that follower user group together building up a unique event I was pretty excited to learn who is going to be speaker for the event. BDotNet.in – Bangalore .NET Usergroup BITPro.in – Bangalore ITPro Usergroup It was indeed joy when I learned that presenter will be Vinod Kumar, who is integral part of user groups and hardcore SQL Server enthusiast. Vinod Kumar is going to present on following two sessions which are both focused on internals of the Windows and SQL Server. Understanding Windows with SysInternals Tools – This session will cover various tools from usage of Memory, x86 architecture, x64, WOW mode, Page faults, Virtual Memory mapping, OOM scenario, Perf Tool, PAL tool, Logman and more. Peeling the Onion: SQL Server Internals Demystified – This session will cover advanced disk formats, SQL Server 2012 security changes, memory changes, indirect checkPoint and more. I am very excited as this time I will get opportunity to sit in front rows (as I will be reaching there to get best possible position) and learn. I am looking forward to the event and I hope you will join us as well. Event Details: Date: Saturday, April 7, 2012 (10:30am until 1:30pm) Venue: Microsoft, Domlur, Bangalore. Event Details: https://www.facebook.com/events/139444029517882/ This session is FREE for all and everybody and anybody can walk in. Community Blog Posts Here are few of the blog post written by the community on this subject. Vinod Kumar on Reliving #TechEdIn at Blr UG Manas Dash on Reliving TechEd India 2012 with Vinod Kumar Sudeepta Ganguly on SysInternals n SQLInternals with Vinod Kumar Lohith Re Live TechEd India 2012 with Vinod Kumar  Reference: Pinal Dave (http://blog.sqlauthority.com) http://www.youtube.com/watch?v=oRw-p4mahLU Filed under: PostADay, SQL, SQL Authority, SQL Query, SQL Server, SQL Tips and Tricks, SQLAuthority Author Visit, T SQL, Technology, Video

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  • where is memory gone (no, not buffers or cache)

    - by Marki
    can anyone tell me where the memory is gone: (no, this time neither buffers nor cache) # free total used free shared buffers cached Mem: 3928200 3868560 59640 0 2888 92924 -/+ buffers/cache: 3772748 155452 Swap: 4192956 226352 3966604 top, sorted by memory, descending: top - 13:42:06 up 1 day, 3:47, 2 users, load average: 0.08, 0.12, 0.36 Tasks: 228 total, 1 running, 227 sleeping, 0 stopped, 0 zombie Cpu0 : 2.0%us, 4.0%sy, 0.0%ni, 90.1%id, 0.0%wa, 0.0%hi, 4.0%si, 0.0%st Cpu1 : 0.0%us, 0.0%sy, 0.0%ni, 0.0%id,100.0%wa, 0.0%hi, 0.0%si, 0.0%st Mem: 3928200k total, 3868020k used, 60180k free, 2896k buffers Swap: 4192956k total, 226048k used, 3966908k free, 82068k cached PID USER PR NI VIRT RES SHR S %CPU %MEM TIME+ COMMAND 3863 root 20 0 902m 199m 3296 S 7 5.2 99:08.77 ndsd 21906 root 20 0 138m 9076 2988 S 0 0.2 0:00.02 sfcbd 2332 root 20 0 126m 4660 1332 S 0 0.1 0:17.72 mono 4243 wwwrun 20 0 683m 4468 668 S 0 0.1 0:07.38 java 2994 root 20 0 202m 2288 1660 S 0 0.1 6:10.02 httpstkd 4338 root 20 0 184m 2240 1112 S 0 0.1 0:00.52 namcd 21898 root 20 0 32368 1832 1256 R 1 0.0 0:00.08 top In fact, some time ago oom kicked in and crashed the system (kernel panic), and I'm afraid we're again not far from that point.... UPDATE # cat /proc/meminfo MemTotal: 3928200 kB MemFree: 51336 kB Buffers: 2964 kB Cached: 72876 kB SwapCached: 29128 kB Active: 233440 kB Inactive: 88040 kB Active(anon): 188920 kB Inactive(anon): 56752 kB Active(file): 44520 kB Inactive(file): 31288 kB Unevictable: 0 kB Mlocked: 0 kB SwapTotal: 4192956 kB SwapFree: 3966824 kB Dirty: 32 kB Writeback: 0 kB AnonPages: 225112 kB Mapped: 11356 kB Shmem: 32 kB Slab: 1624080 kB SReclaimable: 13740 kB SUnreclaim: 1610340 kB KernelStack: 4176 kB PageTables: 10500 kB NFS_Unstable: 0 kB Bounce: 0 kB WritebackTmp: 0 kB CommitLimit: 6157056 kB Committed_AS: 2397684 kB VmallocTotal: 34359738367 kB VmallocUsed: 441372 kB VmallocChunk: 34359246755 kB HardwareCorrupted: 0 kB HugePages_Total: 0 HugePages_Free: 0 HugePages_Rsvd: 0 HugePages_Surp: 0 Hugepagesize: 2048 kB DirectMap4k: 10240 kB DirectMap2M: 4184064 kB slabtop Active / Total Objects (% used) : 9041019 / 9207548 (98.2%) Active / Total Slabs (% used) : 401132 / 401156 (100.0%) Active / Total Caches (% used) : 91 / 159 (57.2%) Active / Total Size (% used) : 1491537.88K / 1519791.56K (98.1%) Minimum / Average / Maximum Object : 0.02K / 0.17K / 4096.00K OBJS ACTIVE USE OBJ SIZE SLABS OBJ/SLAB CACHE SIZE NAME 4240470 4240319 99% 0.12K 141349 30 565396K pid 2245140 2219675 98% 0.25K 149676 15 598704K size-256 2238090 2210087 98% 0.12K 74603 30 298412K size-128 ...

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  • mod_fcgi in virtualmin: graceful kill fail, sending SIGKILL?

    - by mgjk
    Yesterday around 1am, our server ground to a crawl. This doesn't happen often, but I'm trying to get to the bottom of it. There is no unusual traffic volume, no unusual processes running, just all of the sudden the server started killing fcgid processes. [Thu Aug 02 01:17:32 2012] [warn] mod_fcgid: process 26460 graceful kill fail, sending SIGKILL ... for as many fcgid processes as we have... CPU idle fell to 0% and I/O seemed to take up most of the load. The issue lasted about 5 minutes. I suspect there was some swap activity, although I'm not sure if it was due to killed processes being swapped in to die, or if it was because some process ramped up memory usage faster than my process watching scripts can see them. The oom-killer wasn't triggered (at least it's not logged), so I think this was Apache for some reason restarting the processes. This is not regular, and nothing obvious appears in cron. Is there a normal Apache process which might cause this? We run dozens of different sites, and it was late at night, so volume was very, very low. (maybe 200 requests in a 10 minute period).

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  • How Would I Restrict a Linux Binary to a Limited Amount of RAM?

    - by Ken S.
    I would like to be able to limit an installed binary to only be able to use up to a certain amount of RAM. I don't want it to get killed if it exceeds it, only that that would be the max amount that it could use. The problem I am facing is that I am running an Apache 2.2 server with PHP and some custom code that a developer is writing for us. The problem is that somewhere in there code they launch a PHP exec call that launches ImageMagick's 'convert' to create a resized image file. I'm not privy to a lot of details to the project or the code, but need to find a solution to keep them from killing the server until they can find a way to optimize the code. I had thought that I could do this with /etc/security/limits.conf and setting a limit on the apache user, but it seems to have no effect. This is what I used: www-data hard as 500 If I understand it correctly, this should have limited any apache user process to a maximum to 500kb, however, when I ran a test script that would chew up a lot of RAM, this actually got up to 1.5GB before I killed it. Here is the output of 'ps auxf' after the setting change and a system reboot: USER PID %CPU %MEM VSZ RSS TTY STAT START TIME COMMAND root 5268 0.0 0.0 401072 10264 ? Ss 15:28 0:00 /usr/sbin/apache2 -k start www-data 5274 0.0 0.0 402468 9484 ? S 15:28 0:00 \_ /usr/sbin/apache2 -k start www-data 5285 102 9.4 1633500 1503452 ? Rl 15:29 0:58 | \_ /usr/bin/convert ../tours/28786/.…. www-data 5275 0.0 0.0 401072 5812 ? S 15:28 0:00 \_ /usr/sbin/apache2 -k start Next I thought I could do it with Apache's RlimitMEM setting, but get the same result of it not getting limited. Here is what I have in my apache.conf file: RLimitMEM 500000 512000 It wasn't until many hours later that I figured out that if the process actually reached that amount that it would die with an OOM error. Would love any ideas on how to set this limit so other things could function on the server, and all of them could play together nicely.

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  • Use MTOM/streaming from C# calling a webservice in java exposed via jaxws

    - by raticulin
    We have this webservice created with jax-ws @WebService(name = "Mywebser", targetNamespace = "http://namespace") @MTOM(threshold = 2048) @SOAPBinding(style = SOAPBinding.Style.DOCUMENT, use = SOAPBinding.Use.LITERAL, parameterStyle = SOAPBinding.ParameterStyle.WRAPPED) public class Mywebser { @WebMethod(operationName = "doStreaming", action = "urn:doStreaming") @WebResult(name = "return") public ResultInfo doStreaming(String username, String pwd, @XmlMimeType("application/octet-stream") DataHandler data, boolean overw){ ... } } The generated client side looks like this: @WebMethod(action = "urn:doStreaming") @WebResult(targetNamespace = "") @RequestWrapper(localName = "doStreaming", targetNamespace = "http://namespace", className = "com.mypack.client.doStreaming") @ResponseWrapper(localName = "doStreamingResponse", targetNamespace = "http://namespace", className = "com.mypack.client.doStreamingResponse") public ResultInfo doStreaming( @WebParam(name = "arg0", targetNamespace = "") String arg0, @WebParam(name = "arg1", targetNamespace = "") String arg1, @WebParam(name = "arg2", targetNamespace = "") DataHandler arg2, @WebParam(name = "arg3", targetNamespace = "") boolean arg3); By using it this way it uses streaming properly (verified we can pass an argument of 80mb when the jvm had less allowed. MywebserService serv = ...; Mywebser wso = serv.getMywebserPort(new MTOMFeature()); Map<String, Object> ctxt = ((BindingProvider) wso).getRequestContext(); ctxt.put(JAXWSProperties.HTTP_CLIENT_STREAMING_CHUNK_SIZE, 8192); DataHandler dataHandler = new DataHandler(new FileDataSource("c:\\temp\\A.dat")); arcres = wso.doStreaming("a", "b", dataHandler, true); We generate a clienet for .net, with VS2008, using "Add Web Reference", we get this C# code: [System.Web.Services.Protocols.SoapDocumentMethodAttribute("urn:doStreaming",RequestNamespace="http://namespace",ResponseNamespace="http://namespace",Use=System.Web.Services.Description.SoapBindingUse.Literal,ParameterStyle=System.Web.Services.Protocols.SoapParameterStyle.Wrapped)] [return: System.Xml.Serialization.XmlElementAttribute("return",Form=System.Xml.Schema.XmlSchemaForm.Unqualified)] public ResultInfo doStreaming( [System.Xml.Serialization.XmlElementAttribute(Form=System.Xml.Schema.XmlSchemaForm.Unqualified)] string arg0, [System.Xml.Serialization.XmlElementAttribute(Form=System.Xml.Schema.XmlSchemaForm.Unqualified)] string arg1, [System.Xml.Serialization.XmlElementAttribute(Form=System.Xml.Schema.XmlSchemaForm.Unqualified,DataType="base64Binary")] byte[] arg2, [System.Xml.Serialization.XmlElementAttribute(Form=System.Xml.Schema.XmlSchemaForm.Unqualified)] bool arg3) Apparently this is not using streaming? The type base64Binary of arg2 seems not the right one? In java it's a DataHandler. By testing it with low memory on the java side we can see it is not using streaming as it fails with OOM. Does someone knows if this is possible, and if so how? Our environment: server: jdk1.6, jaxws 2.1.7 client: C# 2.0, visual studio 2008

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  • How to analyze 'dbcc memorystatus' result in SQL Server 2008

    - by envykok
    Currently i am facing a sql memory pressure issue. i have run 'dbcc memorystatus', here is part of my result: Memory Manager KB VM Reserved 23617160 VM Committed 14818444 Locked Pages Allocated 0 Reserved Memory 1024 Reserved Memory In Use 0 Memory node Id = 0 KB VM Reserved 23613512 VM Committed 14814908 Locked Pages Allocated 0 MultiPage Allocator 387400 SinglePage Allocator 3265000 MEMORYCLERK_SQLBUFFERPOOL (node 0) KB VM Reserved 16809984 VM Committed 14184208 Locked Pages Allocated 0 SM Reserved 0 SM Committed 0 SinglePage Allocator 0 MultiPage Allocator 408 MEMORYCLERK_SQLCLR (node 0) KB VM Reserved 6311612 VM Committed 141616 Locked Pages Allocated 0 SM Reserved 0 SM Committed 0 SinglePage Allocator 1456 MultiPage Allocator 20144 CACHESTORE_SQLCP (node 0) KB VM Reserved 0 VM Committed 0 Locked Pages Allocated 0 SM Reserved 0 SM Committed 0 SinglePage Allocator 3101784 MultiPage Allocator 300328 Buffer Pool Value Committed 1742946 Target 1742946 Database 1333883 Dirty 940 In IO 1 Latched 18 Free 89 Stolen 408974 Reserved 2080 Visible 1742946 Stolen Potential 1579938 Limiting Factor 13 Last OOM Factor 0 Page Life Expectancy 5463 Process/System Counts Value Available Physical Memory 258572288 Available Virtual Memory 8771398631424 Available Paging File 16030617600 Working Set 15225597952 Percent of Committed Memory in WS 100 Page Faults 305556823 System physical memory high 1 System physical memory low 0 Process physical memory low 0 Process virtual memory low 0 Procedure Cache Value TotalProcs 11382 TotalPages 430160 InUsePages 28 Can you lead me to analyze this result ? Is it a lot execute plan have been cached causing the memory issue or other reasons?

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  • evaluation of a java thread dump

    - by raticulin
    I got a thread dump of one of my processes. It has a bunch of these threads. I guess they are keeping a bunch of memory so I am getting OOM. "Thread-8264" prio=6 tid=0x4c94ac00 nid=0xf3c runnable [0x4fe7f000] java.lang.Thread.State: RUNNABLE at java.util.zip.Inflater.inflateBytes(Native Method) at java.util.zip.Inflater.inflate(Inflater.java:223) - locked <0x0c9bc640 (a java.util.zip.Inflater) at org.apache.commons.compress.archivers.zip.ZipArchiveInputStream.read(ZipArchiveInputStream.java:235) at com.my.ZipExtractorCommonsCompress.extract(ZipExtractorCommonsCompress.java:48) at com.my.CustomThreadedExtractorWrapper$ExtractionThread.run(CustomThreadedExtractorWrapper.java:151) Locked ownable synchronizers: - None "Thread-8241" prio=6 tid=0x4c94a400 nid=0xb8c runnable [0x4faef000] java.lang.Thread.State: RUNNABLE at java.util.zip.Inflater.inflateBytes(Native Method) at java.util.zip.Inflater.inflate(Inflater.java:223) - locked <0x0c36b808 (a java.util.zip.Inflater) at org.apache.commons.compress.archivers.zip.ZipArchiveInputStream.read(ZipArchiveInputStream.java:235) at com.my.ZipExtractorCommonsCompress.extract(ZipExtractorCommonsCompress.java:48) at com.my.CustomThreadedExtractorWrapper$ExtractionThread.run(CustomThreadedExtractorWrapper.java:151) Locked ownable synchronizers: - None I am trying to find out how it arrived to this situation. CustomThreadedExtractorWrapper is a wrapper class that fires a thread to do some work (ExtractionThread, which uses ZipExtractorCommonsCompress to extract zip contents from a compressed stream). If the task is taking too long, ExtractionThread.interrupt(); is called to cancel the operation. I can see in my logs that the cancellation happened 25 times. And I see 21 of these threads in my dump. My questions: What is the status of these threads? Alive and running? Blocked somehow? They did not die with .interrupt() apparently? Is there a sure way to really kill a thread? What does really mean 'locked ' in the stack trace? Line 223 in Inflater.java is: public synchronized int inflate(byte[] b, int off, int len) { ... //return is line 223 return inflateBytes(b, off, len); }

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  • Loading saved byte array to memory stream causes out of memory exception

    - by user2320861
    At some point in my program the user selects a bitmap to use as the background image of a Panel object. When the user does this, the program immediately draws the panel with the background image and everything works fine. When the user clicks "Save", the following code saves the bitmap to a DataTable object. MyDataSet.MyDataTableRow myDataRow = MyDataSet.MyDataTableRow.NewMyDataTableRow(); //has a byte[] column named BackgroundImageByteArray using (MemoryStream stream = new MemoryStream()) { this.Panel.BackgroundImage.Save(stream, ImageFormat.Bmp); myDataRow.BackgroundImageByteArray = stream.ToArray(); } Everything works fine, there is no out of memory exception with this stream, even though it contains all the image bytes. However, when the application launches and loads saved data, the following code throws an Out of Memory Exception: using (MemoryStream stream = new MemoryStream(myDataRow.BackGroundImageByteArray)) { this.Panel.BackgroundImage = Image.FromStream(stream); } The streams are the same length. I don't understand how one throws an out of memory exception and the other doesn't. How can I load this bitmap? P.S. I've also tried using (MemoryStream stream = new MemoryStream(myDataRow.BackgroundImageByteArray.Length)) { stream.Write(myDataRow.BackgroundImageByteArray, 0, myDataRow.BackgroundImageByteArray.Length); //throw OoM exception here. }

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  • How to get more information from the system crash

    - by viraptor
    I'd like to debug an issue I'm having with a linux (debian stable) server, but I'm running out of ideas of how to confirm any diagnosis. Some background: The servers are running DL160 class with hardware raid between two disks. They're running a lot of services, mostly utilising network interface and CPU. There are 8 cpus and 7 "main" most cpu-hungry processes are bound to one core each via cpu affinity. Other random background scripts are not forced anywhere. The filesystem is writing ~1.5k blocks/s the whole time (goes up above 2k/s in peak times). Normal CPU usage for those servers is ~60% on 7 cores and some minimal usage on the last (whatever's running on shells usually). What actually happens is that the "main" services start using 100% CPU at some point, mainly stuck in kernel time. After a couple of seconds, LA goes over 400 and we lose any way to connect to the box (KVM is on it's way, but not there yet). Sometimes we see a kernel reporting hung task (but not always): [118951.272884] INFO: task zsh:15911 blocked for more than 120 seconds. [118951.272955] "echo 0 > /proc/sys/kernel/hung_task_timeout_secs" disables this message. [118951.273037] zsh D 0000000000000000 0 15911 1 [118951.273093] ffff8101898c3c48 0000000000000046 0000000000000000 ffffffffa0155e0a [118951.273183] ffff8101a753a080 ffff81021f1c5570 ffff8101a753a308 000000051f0fd740 [118951.273274] 0000000000000246 0000000000000000 00000000ffffffbd 0000000000000001 [118951.273335] Call Trace: [118951.273424] [<ffffffffa0155e0a>] :ext3:__ext3_journal_dirty_metadata+0x1e/0x46 [118951.273510] [<ffffffff804294f6>] schedule_timeout+0x1e/0xad [118951.273563] [<ffffffff8027577c>] __pagevec_free+0x21/0x2e [118951.273613] [<ffffffff80428b0b>] wait_for_common+0xcf/0x13a [118951.273692] [<ffffffff8022c168>] default_wake_function+0x0/0xe .... This would point at raid / disk failure, however sometimes the tasks are hung on kernel's gettsc which would indicate some general weird hardware behaviour. It's also running mysql (almost read-only, 99% cache hit), which seems to spawn a lot more threads during the system problems. During the day it does ~200kq/s (selects) and ~10q/s (writes). The host is never running out of memory or swapping, no oom reports are spotted. We've got many boxes with similar/same hardware and they all seem to behave that way, but I'm not sure which part fails, so it's probably not a good idea to just grab something more powerful and hope the problem goes away. Applications themselves don't really report anything wrong when they're running. I can run anything safely on the same hardware in an isolated environment. What can I do to narrow down the problem? Where else should I look for explanation?

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