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• java -> System.gc(); Does this call opens a new Thread or not?

  - by ogzylz

  For example I such a code ... get some memory and lose all the pointers to that memory so that System.gc(); can collect it. call System.gc(); do some other tasks; Here does the "do some other tasks;" and "System.gc();" works in paralel or does the "do some other tasks;" waits for "System.gc();" to be executed Thank you

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• Doesn't Matlab optimize the following?

  - by kloop

  I have a very long vector 1xr v, and a very long vector w 1xs, and a matrix A rxs, which is sparse (but very big in dimensions). I was expecting the following to be optimized by Matlab so I won't run into trouble with memory: A./(v'*w) but it seems like Matlab is actually trying to generate the full v'*w matrix, because I am running into Out of memory issue. Is there a way to overcome this? Note that there is no need to calculate all v'*w because many values of A are 0. EDIT: If that were possible, one way to do it would be to do A(find(A)) ./ (v'*w)(find(A)); but you can't select a subset of a matrix (v'*w in this case) without first calculating it and putting it in a variable.

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• When machine code is generated from a program how does it translates to hardware level operations ??

  - by user553492

  Like if say the instruction is something like 100010101 1010101 01010101 011101010101. Now how is this translating to an actual job of deleting something from memory? Memory consists of actual physical transistors the HOLD data. What causes them to lose that data is some external signal? I want to know how that signal is generated. Like how some binary numbers change the state of a physical transistor. Is there a level beyond machine code that isn't explicitly visible to a programmer? I have heard of microcode that handle code at hardware level, even below assembly language. But still I pretty much don't understand. Thanks!

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• Read a file to multiple array byte[]

  - by hankol

  I have an encryption algorithm (AES) that accepts file converted to array byte and encrypt it. Since I am going to process a very big size files, the JVM may go out of memory. I am planing to read the files in multiple array byte. each containing some part of the file. Then I teratively feed the algorithm. Finally merge them to produce encrypted file. So my question is: there any way to read a file part by part to multiple array byte? I thought I can use the following to read the file to array byte: IOUtils.toByteArray(InputStream input). And then split the array into multiple bytes using: Arrays.copyOfRange(). But I am afraid that the first code that reads file to byte will make the JVM to go out of memory. any suggestion please ? thanks

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• 'Caching' a large table in ASP.NET

  - by TheNewGuy

  I understand that each page refresh, especially in 'AjaxLand', causes my back-end/code-behind class to be called from scratch... This is a problem because my class (which is a member object in System.Web.UI.Page) contains A LOT of data that it sources from a database. So now every page refresh in AjaxLand is causing me to making large backend DB calls, rather than just to reuse a class object from memory. Any fix for this? Is this where session variables come into play? Are session variables the only option I have to retain an object in memory that is linked to a single-user and a single-session instance?

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• Sequence Number in testing Spring application with JUnit (Hibernating, Spring MVC)

  - by MBK

  I am testing DAO in Spring Application. @RunWith(SpringJUnit4ClassRunner.class) @ContextConfiguration(locations = "classpath:/applicationContext.xml") @TransactionConfiguration(transactionManager = "transactionManager", defaultRollback = true) @Transactional public class CommentDAOImplTest { @Autowired //testing mehods here} The tests are running good. Iam able to add an comment and I also have a defaultRollback property set. So, the added comment will be deleted automatically. happy!..Now the problem is with the sequence number for mcomment. Can I, in any way rollback the seq number? any suggestins on that. I dont want to mess up the sequrnce number. Business requires comment Id to be showed. (I still dont know why). I know in memory db is an option....but I am guessing defaultRollback purpose is to eliminate in memory db testing and mocking. (Just my opinion.)

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• Objective-C retain clarification

  - by Maverick

  I'm looking at this code: NSMutableArray *controllers = [[NSMutableArray alloc] init]; for (unsigned i = 0; i < kNumberOfPages; i++) { [controllers addObject:[NSNull null]]; } self.viewControllers = controllers; [controllers release]; Later on... - (void)dealloc { [viewControllers release]; ... } I see that self.viewControllers and controllers now point to the same allocated memory (of type NSMutableArray *), but when I call [controllers release] isn't self.viewControllers released as well, or is setting self.viewControllers = controllers automatically retains that memory?

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• Fastest method in merging of the two: dicts vs lists

  - by tipu

  I'm doing some indexing and memory is sufficient but CPU isn't. So I have one huge dictionary and then a smaller dictionary I'm merging into the bigger one: big_dict = {"the" : {"1" : 1, "2" : 1, "3" : 1, "4" : 1, "5" : 1}} smaller_dict = {"the" : {"6" : 1, "7" : 1}} #after merging resulting_dict = {"the" : {"1" : 1, "2" : 1, "3" : 1, "4" : 1, "5" : 1, "6" : 1, "7" : 1}} My question is for the values in both dicts, should I use a dict (as displayed above) or list (as displayed below) when my priority is to use as much memory as possible to gain the most out of my CPU? For clarification, using a list would look like: big_dict = {"the" : [1, 2, 3, 4, 5]} smaller_dict = {"the" : [6,7]} #after merging resulting_dict = {"the" : [1, 2, 3, 4, 5, 6, 7]} Side note: The reason I'm using a dict nested into a dict rather than a set nested in a dict is because JSON won't let me do json.dumps because a set isn't key/value pairs, it's (as far as the JSON library is concerned) {"a", "series", "of", "keys"} Also, after choosing between using dict to a list, how would I go about implementing the most efficient, in terms of CPU, method of merging them? I appreciate the help.

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• fastest c++ file compression library available?

  - by Fabien Hure

  I have a need to find the best library to compress in memory data. I am currently using zlib but I am wondering if there is a better compression library; better in terms of performance and memory footprint. It should be able to handle multiple files in the same archive. I am looking for a C/C++ library. Performance is the key factor. The files that are being compressed are small to large XML files.

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• MySQL TEXT field performance

  - by Jonathon

  I have several TEXT and/or MEDIUMTEXT fields in each of our 1000 MySQL tables. I now know that TEXT fields are written to disk rather than in memory when queried. Is that also true even if that field is not called in the query? For example, if I have a table (tbExam) with 2 fields (id int(11) and comment text) and I run SELECT id FROM tbExam, does MySQL still have to write that to disk before returning results or will it run that query in memory? I am trying to figure out if I need to reconfigure our actual db tables to switch to varchar(xxxx) or keep the text fields and reconfigure the queries.

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• Eclipse 3.5 (Cocoa) slowing down irregularly after some time

  - by chris_l

  Hi, I'd like to hear, if anyone else encounters the same problems, and doesn't use Google's GWT (2.0) plugins: Sometimes, my Eclipse 3.5 (Cocoa) slows down after some time of usage (=30 minutes), so that things like maximizing an editor or moving the splitters becomes unbearably slow (reacting only after several seconds). After an Eclipse restart, everything's fine again. I'm not running low on memory (neither free RAM, nor memory available to Eclipse - Heap/Stack/PermGenSpace), and my system specs are not too bad. I know exactly one other person so far, who sees the same problem - but he also uses the GWT plugins. Since these issues appear irregularly, they're hard to track. Before creating an issue on the GWT bug tracker, I'd like to find out, if this also happens for somebody without Google's plugins. Thanks, Chris Edit: I'm running Snow Leopard 10.6.2

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• C++: String and unions

  - by sub

  I'm having a (design) problem: I'm building an interpreter and I need some storage for variables. There are basically two types of content a variable here can have: string or int. I'm using a simple class for the variables, all variables are then stored in a vector. However, as a variable can hold a number or a string, I don't want C++ to allocate both and consume memory for no reason. That's why I wanted to use unions: union { string StringValue; int IntValue; } However, strings don't work with unions. Is there any workaround so no memory gets eaten for no reason?

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• Difference between local and instance variables in ruby

  - by fflyer05

  I am working on a script that creates several fairly complex nested hash datastructures and then iterates through them conditionally creating database records. This is a standalone script using active record. After several minutes of running I noticed a significant lag in server responsiveness and discovered that the script, while being set to be nice +19, was enjoying a steady %85 - %90 total server memory. In this case I am using instance variables simply for readability. It helps knowing what is going to be re-used outside of the loop vs. what won't. Is there a reason to not use instance variables when they are not needed? Are there differences in memory allocation and management between local and instance variables? Would it help setting @variable = nil when its no longer needed?

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• Optimal ASP.Net cache duration for a large site?

  - by HeroicLife

  I've read lots of material on how to do ASP.Net caching but little on the optimal duration that pages should be cached for. Let's say that I have a popular site with 50,000 pages. The content does not change frequently, so I could cache pages for up to an hour if I wanted. The server has 16 GB of RAM, but database connections are limited. How long should pages be cached for? My thinking is that if I set the cache duration too high (let's say 60 minutes), I will fill up memory with a fraction of the total content, which will continually be shuffled in and out of memory. Furthermore, let's say that 10% of the pages are responsible for 90% of traffic. If the popular pages are hit every second, and the unpopular ones every hour, then a 60 second cache would only keep the load-intensive content cached without sacrificing freshness. Should numerous but rarely-accessed content be cached at all?

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• How to work with images(png's) of size 2-4Mb.

  - by Sam

  I am working with images of size 2 to 4MB. I want to edit image of resolution 1200x1600. performing scaling, traslation and rotation operations. I want to another images on that and saving it to photo album. My app is crashing(giving memory warning) after i successfully edit one image and save to album. I have releasing some images when i get memory warning. But still it crashes as i am working with 2 images of size 3MB each and context of size 1200x1600 and getting a image from the context at the same time. Is there any way to compress images and work with it by performing scaling, traslation and rotation operations?

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• Have I pushed the limits of my current VPS or is there room for optimization?

  - by JRameau

  I am currently on a mediatemple DV server (basic) 512mb dedicated ram, this is a CentOS based VPS with Plesk and Virtuozzo. My experience with it from day 1 has been bad and I only could sooth my server issues with several caching "Band-aids," but my sites are not as small as they were a year ago either so the issues have worsen. I have 3 Drupal installs running on separate (plesk) domains, 1 of those drupal installs is a multisite, that consists of 5-6 sites 2 of those sites are bringing in actual traffic. Those caching "Band-aids" I mentioned are APC, which seemed to help alot initially, and Drupal's Boost, which is considered a poorman's Varnish, it makes all my pages static for anonymous users. Last 30day combined estimate on Google Ananlytics: 90k visitors 260k pageviews. Issue: alot of downtime, I am continually checking if my sites are up, and lately I have been finding it down more than 3 times daily. Restarting Apache will bring it back up, for some time. I have google search every error message and looked up ways to optimize my DV server, and I am beyond stump what is my next move. Is this server bad, have I hit a impossibly low restriction such as the 12mb kernel memory barrier (kmemsize), is it on my end, do I need to optimize some more? *I have provided as much information as I can below, any help or suggestions given will be appreciated Common Error messages I see in the log: [error] (12)Cannot allocate memory: fork: Unable to fork new process [error] make_obcallback: could not import mod_python.apache.\n Traceback (most recent call last): File "/usr/lib/python2.4/site-packages/mod_python/apache.py", line 21, in ? import traceback File "/usr/lib/python2.4/traceback.py", line 3, in ? import linecache ImportError: No module named linecache [error] python_handler: no interpreter callback found. [warn-phpd] mmap cache can't open /var/www/vhosts/***/httpdocs/*** - Too many open files in system (pid ***) [alert] Child 8125 returned a Fatal error... Apache is exiting! [emerg] (43)Identifier removed: couldn't grab the accept mutex [emerg] (22)Invalid argument: couldn't release the accept mutex cat /proc/user_beancounters: Version: 2.5 uid resource held maxheld barrier limit failcnt 41548: kmemsize 4582652 5306699 12288832 13517715 21105036 lockedpages 0 0 600 600 0 privvmpages 38151 42676 229036 249036 0 shmpages 16274 16274 17237 17237 2 dummy 0 0 0 0 0 numproc 43 46 300 300 0 physpages 27260 29528 0 2147483647 0 vmguarpages 0 0 131072 2147483647 0 oomguarpages 27270 29538 131072 2147483647 0 numtcpsock 21 29 300 300 0 numflock 8 8 480 528 0 numpty 1 1 30 30 0 numsiginfo 0 1 1024 1024 0 tcpsndbuf 648440 675272 2867477 4096277 1711499 tcprcvbuf 301620 359716 2867477 4096277 0 othersockbuf 4472 4472 1433738 2662538 0 dgramrcvbuf 0 0 1433738 1433738 0 numothersock 12 12 300 300 0 dcachesize 0 0 2684271 2764800 0 numfile 3447 3496 6300 6300 3872 dummy 0 0 0 0 0 dummy 0 0 0 0 0 dummy 0 0 0 0 0 numiptent 14 14 200 200 0 TOP: (In January the load avg was really high 3-10, I was able to bring it down where it is currently is by giving APC more memory play around with) top - 16:46:07 up 2:13, 1 user, load average: 0.34, 0.20, 0.20 Tasks: 40 total, 2 running, 37 sleeping, 0 stopped, 1 zombie Cpu(s): 0.3% us, 0.1% sy, 0.0% ni, 99.7% id, 0.0% wa, 0.0% hi, 0.0% si Mem: 916144k total, 156668k used, 759476k free, 0k buffers Swap: 0k total, 0k used, 0k free, 0k cached MySQLTuner: (after optimizing every table and repairing any table with overage I got the fragmented count down to 86) [--] Data in MyISAM tables: 285M (Tables: 1105) [!!] Total fragmented tables: 86 [--] Up for: 2h 44m 38s (409K q [41.421 qps], 6K conn, TX: 1B, RX: 174M) [--] Reads / Writes: 79% / 21% [--] Total buffers: 58.0M global + 2.7M per thread (100 max threads) [!!] Query cache prunes per day: 675307 [!!] Temporary tables created on disk: 35% (7K on disk / 20K total)

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• Is the Cloud ready for an Enterprise Java web application? Seeking a JEE hosting advice.

  - by Jakub Holý

  Greetings to all the smart people around here! I'd like to ask whether it is feasible or a good idea at all to deploy a Java enterprise web application to a Cloud such as Amazon EC2. More exactly, I'm looking for infrastructure options for an application that shall handle few hundred users with long but neither CPU nor memory intensive sessions. I'm considering dedicated servers, virtual private servers (VPSs) and EC2. I've noticed that there is a project called JBoss Cloud so people are working on enabling such a deployment, on the other hand it doesn't seem to be mature yet and I'm not sure that the cloud is ready for this kind of applications, which differs from the typical cloud-based applications like Twitter. Would you recommend to deploy it to the cloud? What are the pros and cons? The application is a Java EE 5 web application whose main function is to enable users to compose their own customized Product by combining the available Parts. It uses stateless and stateful session beans and JPA for persistence of entities to a RDBMS and fetches information about Parts from the company's inventory system via a web service. Aside of external users it's used also by few internal ones, who are authenticated against the company's LDAP. The application should handle around 300-400 concurrent users building their product and should be reasonably scalable and available though these qualities are only of a medium importance at this stage. I've proposed an architecture consisting of a firewall (FW) and load balancer supporting sticky sessions and https (in the Cloud this would be replaced with EC2's Elastic Load Balancing service and FW on the app. servers, in a physical architecture the load-balancer would be a HW), then two physical clustered application servers combined with web servers (so that if one fails, a user doesn't loose his/her long built product) and finally a database server. The DB server would need a slave backup instance that can replace the master instance if it fails. This should provide reasonable availability and fault tolerance and provide good scalability as long as a single RDBMS can keep with the load, which should be OK for quite a while because most of the operations are done in the memory using a stateful bean and only occasionally stored or retrieved from the DB and the amount of data is low too. A problematic part could be the dependency on the remote inventory system webservice but with good caching of its outputs in the application it should be OK too. Unfortunately I've only vague idea of the system resources (memory size, number and speed of CPUs/cores) that such an "average Java EE application" for few hundred users needs. My rough and mostly unfounded estimate based on actual Amazon offerings is that 1.7GB and a single, 2-core "modern CPU" with speed around 2.5GHz (the High-CPU Medium Instance) should be sufficient for any of the two application servers (since we can handle higher load by provisioning more of them). Alternatively I would consider using the Large instance (64b, 7.5GB RAM, 2 cores at 1GHz) So my question is whether such a deployment to the cloud is technically and financially feasible or whether dedicated/VPS servers would be a better option and whether there are some real-world experiences with something similar. Thank you very much! /Jakub Holy PS: I've found the JBoss EAP in a Cloud Case Study that shows that it is possible to deploy a real-world Java EE application to the EC2 cloud but unfortunately there're no details regarding topology, instance types, or anything :-(

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• How to diagnose computer lockup/freezing problem

  - by Scott Mitchell

  I built a desktop computer a couple years back with the following specs: CPU: Intel Core 2 Quad Q9300 Yorkfield 2.5GHz 6MB L2 Cache LGA 775 95W Quad-Core Processor BX80580Q9300 Motherboard: EVGA 122-CK-NF68-T1 LGA 775 NVIDIA nForce 680i SLI ATX Intel Motherboard Video Card: Two EVGA 256-P2-N758-TR GeForce 8600GT SCC 256MB 128-bit GDDR3 PCI Express x16 SLI Supported Video Card PSU: SeaSonic S12 Energy Plus SS-550HT 550W ATX12V V2.3 / EPS12V V2.91 SLI Certified CrossFire Ready 80 PLUS Certified Active PFC Power Supply Memory: Two G.SKILL 4GB (2 x 2GB) 240-Pin DDR2 SDRAM DDR2 800 (PC2 6400) Dual Channel Kit Desktop Memory Model F2-6400CL5D-4GBPQ Since its inception, the machine has periodically locked up, the regularlity having varied over the years from once a day to once a month. Typically, lockups happen once every few days. By "lockup" I mean my computer just freezes. The screen locks up, I can't move the mouse. Hitting keys on my keyboard that normally turn LEDs on or off on the keyboard (such as Caps Lock) no longer turn the LEDs on or off. If there was music playing at the time of the lockup, noise keeps coming out of the speakers, but it's just the current frequency/note that plays indefinitely. There is no BSOD. When such a lockup occurs I have to do a hard reboot by either turning off the computer or hitting the reset button. I have the most recent version of the NVIDIA hardware drivers, and update them semi-regularly, but that hasn't seemed to help. I am currently using Windows 7 x64, but was previously using Windows Server 2003 x64 and having the same lockup issues. My guess is that it's somehow video driver or motherboard related, but I don't know how to go about diagnosing this problem to narrow down which of the two is the culprit. Additional information re: cooling Regarding cooling... I've not installed any after-market cooling systems aside from two regular fans I scavenged from an older computer. The fan atop the CPU is the one that shipped with it. One of the two scavenged fans I added it located at the bottom tower of the corner, in an attempt to create some airflow from front to back. The second fan is pointed directly at the two video cards. SpeedFan installation and readings Per studiohack's suggestion, I installed SpeedFan, which provided the following temperature readings: GPU: 63C GPU: 65C System: 76C CPU: 64C AUX: 36C Core 0: 78C Core 1: 76C Core 2: 79C Core 3: 79C Update #3: Another Lockup :-( Well, I had another lockup last night. :-( SpeedFan reported the CPU temp at 38 C when it happened, and there was no spike in temperature leading up to the freeze. One thing I notice is that the freeze seems more likely to happen if I am watching a video. In fact, of the last 5 freezes over the past month, 4 of them have been while watching a video on Flickr. Not necessarily the same video, but a video nevertheless. I don't know if this is just coincidence or if it means anything. (As an aside, each night before bedtime my 2 year old daughter sits on my lap and watches some home videos on Flickr and, in the last month, has learned the phrase, "Uh oh, computer broke.") Update #4: MemTest86 and 3DMark06 Test Results: Per suggestions in the comments, I ran the MemTest86 overnight and it cycled through the 8 GB of memory 5 times without error. I also ran the 3DMark06 test without a problem (see my scores at http://3dmark.com/3dm06/15163549). So... what now? :-) Any further suggestions on what to check? Is there some way to get a stack trace or something when the computer locks like that? Thanks

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• MySQL 5.5 (Percona) assertion failure log.. what would cause this?

  - by Tom Geee

  256GB, 64 Core , AMD running Ubuntu 12.04 with Percona MySQL 5.5.28. Below is the assertion failure. We just had a second assertion failure (different "in file", position, etc) while running a large set of inserts. After the first failure, MySQL restarted after a reboot only - after continuously looping on the same error after trying to recover. I decided to do a mysqlcheck with -o for optimize. Since these are all Innodb tables (very large tables, 60+GB) this would do an alter table on all tables. In the middle of this , the below assertion failure happened again: 121115 22:30:31 InnoDB: Assertion failure in thread 140086589445888 in file btr0pcur.c line 452 InnoDB: Failing assertion: btr_page_get_prev(next_page, mtr) == buf_block_get_page_no(btr_pcur_get_block(cursor)) InnoDB: We intentionally generate a memory trap. InnoDB: Submit a detailed bug report to http://bugs.mysql.com. InnoDB: If you get repeated assertion failures or crashes, even InnoDB: immediately after the mysqld startup, there may be InnoDB: corruption in the InnoDB tablespace. Please refer to InnoDB: http://dev.mysql.com/doc/refman/5.5/en/forcing-innodb-recovery.html InnoDB: about forcing recovery. 03:30:31 UTC - mysqld got signal 6 ; This could be because you hit a bug. It is also possible that this binary or one of the libraries it was linked against is corrupt, improperly built, or misconfigured. This error can also be caused by malfunctioning hardware. We will try our best to scrape up some info that will hopefully help diagnose the problem, but since we have already crashed, something is definitely wrong and this may fail. Please help us make Percona Server better by reporting any bugs at http://bugs.percona.com/ key_buffer_size=536870912 read_buffer_size=131072 max_used_connections=404 max_threads=500 thread_count=90 connection_count=90 It is possible that mysqld could use up to key_buffer_size + (read_buffer_size + sort_buffer_size)*max_threads = 1618416 K bytes of memory Hope that's ok; if not, decrease some variables in the equation. Thread pointer: 0x14edeb710 Attempting backtrace. You can use the following information to find out where mysqld died. If you see no messages after this, something went terribly wrong... stack_bottom = 7f687366ce80 thread_stack 0x30000 /usr/sbin/mysqld(my_print_stacktrace+0x2e)[0x7b52ee] /usr/sbin/mysqld(handle_fatal_signal+0x484)[0x68f024] /lib/x86_64-linux-gnu/libpthread.so.0(+0xfcb0)[0x7f9cbb23fcb0] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x35)[0x7f9cbaea6425] /lib/x86_64-linux-gnu/libc.so.6(abort+0x17b)[0x7f9cbaea9b8b] /usr/sbin/mysqld[0x858463] /usr/sbin/mysqld[0x804513] /usr/sbin/mysqld[0x808432] /usr/sbin/mysqld[0x7db8bf] /usr/sbin/mysqld(_Z13rr_sequentialP11READ_RECORD+0x1d)[0x755aed] /usr/sbin/mysqld(_Z17mysql_alter_tableP3THDPcS1_P24st_ha_create_informationP10TABLE_LISTP10Alter_infojP8st_orderb+0x216b)[0x60399b] /usr/sbin/mysqld(_Z20mysql_recreate_tableP3THDP10TABLE_LIST+0x166)[0x604bd6] /usr/sbin/mysqld[0x647da1] /usr/sbin/mysqld(_ZN24Optimize_table_statement7executeEP3THD+0xde)[0x64891e] /usr/sbin/mysqld(_Z21mysql_execute_commandP3THD+0x1168)[0x59b558] /usr/sbin/mysqld(_Z11mysql_parseP3THDPcjP12Parser_state+0x30c)[0x5a132c] /usr/sbin/mysqld(_Z16dispatch_command19enum_server_commandP3THDPcj+0x1620)[0x5a2a00] /usr/sbin/mysqld(_Z24do_handle_one_connectionP3THD+0x14f)[0x63ce6f] /usr/sbin/mysqld(handle_one_connection+0x51)[0x63cf31] /lib/x86_64-linux-gnu/libpthread.so.0(+0x7e9a)[0x7f9cbb237e9a] /lib/x86_64-linux-gnu/libc.so.6(clone+0x6d)[0x7f9cbaf63cbd] Trying to get some variables. Some pointers may be invalid and cause the dump to abort. Query (7f6300004b60): is an invalid pointer Connection ID (thread ID): 876 Status: NOT_KILLED You may download the Percona Server operations manual by visiting http://www.percona.com/software/percona-server/. You may find information in the manual which will help you identify the cause of the crash. 121115 22:31:07 [Note] Plugin 'FEDERATED' is disabled. 121115 22:31:07 InnoDB: The InnoDB memory heap is disabled 121115 22:31:07 InnoDB: Mutexes and rw_locks use GCC atomic builtins .. Then it recovered , without a reboot this time. from the log, what would cause this? I am currently running a dump to see if the problem resurfaces. edit: data partition is all in / since this is a hosted, defaulted file system unfortunately: Filesystem Size Used Avail Use% Mounted on /dev/vda3 742G 445G 260G 64% / udev 121G 4.0K 121G 1% /dev tmpfs 49G 248K 49G 1% /run none 5.0M 0 5.0M 0% /run/lock none 121G 0 121G 0% /run/shm /dev/vda1 99M 54M 40M 58% /boot my.cnf: [client] port = 3306 socket = /var/run/mysqld/mysqld.sock [mysqld_safe] socket = /var/run/mysqld/mysqld.sock nice = 0 [mysqld] skip-name-resolve innodb_file_per_table default_storage_engine=InnoDB user = mysql socket = /var/run/mysqld/mysqld.sock port = 3306 basedir = /usr datadir = /data/mysql tmpdir = /tmp skip-external-locking key_buffer = 512M max_allowed_packet = 128M thread_stack = 192K thread_cache_size = 64 myisam-recover = BACKUP max_connections = 500 table_cache = 812 table_definition_cache = 812 #query_cache_limit = 4M #query_cache_size = 512M join_buffer_size = 512K innodb_additional_mem_pool_size = 20M innodb_buffer_pool_size = 196G #innodb_file_io_threads = 4 #innodb_thread_concurrency = 12 innodb_flush_log_at_trx_commit = 1 innodb_log_buffer_size = 8M innodb_log_file_size = 1024M innodb_log_files_in_group = 2 innodb_max_dirty_pages_pct = 90 innodb_lock_wait_timeout = 120 log_error = /var/log/mysql/error.log long_query_time = 5 slow_query_log = 1 slow_query_log_file = /var/log/mysql/slowlog.log [mysqldump] quick quote-names max_allowed_packet = 16M [mysql] [isamchk] key_buffer = 16M

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• Tuning performance of Ubuntu 10.04 on Compaq Evo W4000.

  - by Fantomas

  Hi, I got this computer free and installed Ubuntu 10.04 on it + updates, plus followed the following tutorial all the way: http://www.unixmen.com/linux-tutorials/937-things-to-do-after-installing-ubuntu-1004-lts-lucid-lynx I love the Docky which comes with it, but the computer has been running rather slowly. The System: kernel 2.6.32-22-generic Gnome 2.30.0 (I like Gnome!) Memory: 1GB Processor: Intel (R) Pentium (R) 4 CPU 1700 MHz (needless to say, it is 32 bit). I think I dedicated 128 Mb to video memory while installing, but cannot find this setting now. I did also install an NVidia driver for the 3D card, so I probably want to reclaim that memory back. I want to trim the fat but I also want to keep some of the sex appeal of Ubuntu 10.04. I will gift this computer to a friend, who will use it for Internet, music, videos, word processing, Skype and instant messaging - he is non-technical, so this hardware and Linux should work for him; I just need to speed it up while keeping the good software and having a nice UI. I sort of know my way around Linux, but not that well. Feel free to ask me to run particular commands if you want more info. For starters, here are the services below. Which ones can I kill and how? What else can go? There is no need to run ssh or ftp or http or ntp servers. As I said before, this computer is for non-technical person. There is also absolutely no bluetooth or wireless networking needed - it will feed off a regular ethernet cable. What I do not want to do is reinstall some other distro or recompile a kernel. I want to make it 80% perfect spending 20% of the energy :) Thanks! $ service --status-all [ ? ] acpi-support [ ? ] acpid [ ? ] alsa-mixer-save [ ? ] anacron [ - ] apparmor [ ? ] apport [ ? ] atd [ ? ] avahi-daemon [ ? ] binfmt-support [ - ] bluetooth [ - ] bootlogd [ - ] brltty [ ? ] console-setup [ ? ] cron [ + ] cups [ ? ] dbus [ ? ] dmesg [ ? ] dns-clean [ ? ] failsafe-x [ - ] fancontrol [ ? ] gdm [ - ] grub-common [ ? ] hostname [ ? ] hwclock [ ? ] hwclock-save [ ? ] irqbalance [ - ] kerneloops [ ? ] killprocs [ - ] lm-sensors [ ? ] module-init-tools [ ? ] network-interface [ ? ] network-interface-security [ ? ] network-manager [ ? ] networking [ ? ] ondemand [ ? ] pcmciautils [ ? ] plymouth [ ? ] plymouth-log [ ? ] plymouth-splash [ ? ] plymouth-stop [ ? ] pppd-dns [ ? ] procps [ + ] pulseaudio [ ? ] rc.local [ - ] rsync [ ? ] rsyslog [ - ] saned [ ? ] screen-cleanup [ ? ] sendsigs [ ? ] speech-dispatcher [ ? ] stop-bootlogd [ ? ] stop-bootlogd-single [ ? ] udev [ ? ] udev-finish [ ? ] udevmonitor [ ? ] udevtrigger [ ? ] ufw [ ? ] umountfs [ ? ] umountnfs.sh [ ? ] umountroot [ ? ] unattended-upgrades [ - ] urandom [ + ] winbind [ ? ] wpa-ifupdown [ - ] x11-common

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• Intermittent lockups, unable to diagnose in over a year

  - by Magsol

  Here's a real doosie; I may just give my firstborn child to whomever helps me solve this problem. In July 2008, I assembled what would be my desktop computer for graduate school. Here are the specs of the machine I built: Thermaltake 750W PSU Corsair Dominator 2x2GB 240-pin SDRAM Thermaltake Tower Asus P5K Deluxe Motherboard Intel Core 2 Quad Q9300 2.5GHz CPU 2 x GeForce 8600 GT WD Caviar Blue 640GB hard drive CD burner DVD burner Soon thereafter, I ordered a new motherboard (because I was an idiot; that first motherboard supported CrossFire, not SLI), an Asus P5N-D. I was originally running Windows XP SP3. Pretty much right into the start of the fall semester, my desktop would simply lock up after awhile. If my system was largely idling, it would be after 1-3 days. If was gaming, it often happened an hour or two into my gaming session, indicating a link to activity level. Here's where it started getting interesting. I started looking at the system temps. The CPU was warmer than it should have been (~60s C), so I purchased some more efficient cooling compound a way better cooler for it. Now it hardly goes over 40 C. Intel was even kind enough to swap it out for free, just to rule it out. Lockups continued. The graphics cards were also running pretty warm: about 60 C idling. Removing one of them seemed to improve stability a little bit...as in, it wouldn't lock up quite as frequently, but still always eventually locked up. But it didn't matter which card I used or removed, the lockups continued. I reverted back to the original motherboard, the P5K Deluxe. Lockups continued. I purchased an entirely new motherboard, eVGA's nForce 750i. Lockups continued. Ran memtest86+ over and over and over, with no errors. Even RMA'd the memory. Lockups continued. Replaced the PSU with a Corsair 750W PSU. Lockups continued. Tried disconnecting all IDE drives (HDDs are SATA). Lockups continued. Replaced both graphics cards with a single Radeon HD 4980. Average temps are now always around 50 C when idling, 60 C only when gaming. Lockups continued. Throughout the whole ordeal, the system has been upgraded from Windows XP SP3 to Vista 32-bit, to Vista 64-bit, and is now at Windows 7 64-bit. Lockups have occurred at every step along the way (each OS was in place for at least a few months before the next upgrade). Edit: By "upgrade" I mean clean install each time. In addition to those reformats, I have performed many, many other reformats of the system and a reinstall of whatever OS had been previously installed in an attempt to rectify this problem, to no avail./Edit When the system locks up, there's no blue screen, no reboot, no error message of any kind. It simply freezes in place until I hit the reset button. Very, very rarely, once Windows boots back up, the system informs me that Windows has recovered from an error, but it can never find the source aside from some piece of hardware. I've swapped out every component in this computer, and there are more fans in it than I care to count...though for the sake of completeness: top 80mm case fan (out) rear 80mm case fan (out) rear 120mm case fan (out) front 120mm case fan (in) side 250mm case fan (in) giant CPU fan on-board motherboard fan (the eVGA board) triple-fan memory setup (came with the memory) PSU internal fan another 120mm fan I stuck on the underside of the video card to keep hot air from collecting at the bottom of the case I'm truly out of ideas. ANY help at all would be oh-so-very GREATLY appreciated. Thank you!

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• "Can't create table" when having to many partitions

  - by Chris

  I am currently having a problem I dont understand. Wherever I look it says mySQL (5.5) / InnoDB doesnt have a table limit. I wanted to test the InnoDB compression and was about to create an empty copy of an existing table and ran into the following problem. this one works: CREATE TABLE `hsc` ( LOTS OF STUFF ) ENGINE=InnoDB CHARSET=utf8 PARTITION BY RANGE (pid) SUBPARTITION BY HASH (cons) SUBPARTITIONS 2 (PARTITION hsc_p0 VALUES LESS THAN (10000) , PARTITION hsc_p1 VALUES LESS THAN (20000) , PARTITION hsc_p2 VALUES LESS THAN (30000) , PARTITION hsc_p3 VALUES LESS THAN (40000) , PARTITION hsc_p4 VALUES LESS THAN (50000) , PARTITION hsc_p40 VALUES LESS THAN (4000000) ); this one doesn't: CREATE TABLE `hsc` ( LOTS OF STUFF ) ENGINE=InnoDB CHARSET=utf8 PARTITION BY RANGE (pid) SUBPARTITION BY HASH (cons) SUBPARTITIONS 2 (PARTITION hsc_p0 VALUES LESS THAN (10000) , PARTITION hsc_p1 VALUES LESS THAN (20000) , PARTITION hsc_p2 VALUES LESS THAN (30000) , PARTITION hsc_p3 VALUES LESS THAN (40000) , PARTITION hsc_p4 VALUES LESS THAN (50000) , PARTITION hsc_p5 VALUES LESS THAN (75000) , PARTITION hsc_p6 VALUES LESS THAN (100000) , PARTITION hsc_p7 VALUES LESS THAN (125000) , PARTITION hsc_p8 VALUES LESS THAN (150000) , PARTITION hsc_p9 VALUES LESS THAN (175000) , PARTITION hsc_p40 VALUES LESS THAN (4000000) ); ERROR 1005 (HY000): Can't create table 'hsc' (errno: 1) Its reproducable by removing the number of partitions and adding them again. it does not have to do anything with the name of the table as i tried various names. there is also enough empty space on the HDD. /dev/simfs 230G 26G 192G 12% /var/lib/mysql.mnt There should be no limit on the partitions http://dev.mysql.com/doc/refman/5.5/en/partitioning-limitations.html Maximum number of partitions. The maximum possible number of partitions for a given table (that does not use the NDB storage engine) is 1024. This number includes subpartitions. i have increased both open_files show variables where variable_name LIKE '%open_files%'; +-------------------+-------+ | Variable_name | Value | +-------------------+-------+ | innodb_open_files | 512 | | open_files_limit | 1536 | +-------------------+-------+ No change. Any clues where should I start looking? UPDATE: the whole thing is running in an openvz environment. i saw in users_beancounters that the numflock was a problem, so i increased it. but the problem still persists. maybe this helps: ulimit -a core file size (blocks, -c) 0 data seg size (kbytes, -d) unlimited scheduling priority (-e) 0 file size (blocks, -f) unlimited pending signals (-i) 515011 max locked memory (kbytes, -l) 64 max memory size (kbytes, -m) unlimited open files (-n) 1024 pipe size (512 bytes, -p) 8 POSIX message queues (bytes, -q) 819200 real-time priority (-r) 0 stack size (kbytes, -s) 10240 cpu time (seconds, -t) unlimited max user processes (-u) 515011 virtual memory (kbytes, -v) unlimited file locks (-x) unlimited cat /proc/user_beancounters Version: 2.5 uid resource held maxheld barrier limit failcnt 200: kmemsize 9309653 13357056 14372700 14790164 0 lockedpages 0 1008 2048 2048 0 privvmpages 675424 686528 1048576 1572864 0 shmpages 33 673 21504 21504 0 dummy 0 0 9223372036854775807 9223372036854775807 0 numproc 49 90 240 240 0 physpages 243761 246945 0 9223372036854775807 0 vmguarpages 0 0 1048576 1048576 0 oomguarpages 81672 83305 1048576 1048576 0 numtcpsock 6 8 360 360 0 numflock 175 188 512 512 8 numpty 1 9 16 16 0 numsiginfo 0 48 256 256 0 tcpsndbuf 104640 263912 1720320 2703360 0 tcprcvbuf 98304 131072 1720320 2703360 0 othersockbuf 32368 89304 1126080 2097152 0 dgramrcvbuf 0 2312 262144 262144 0 numothersock 19 28 360 360 0 dcachesize 2285052 3624426 3409920 3624960 0 numfile 616 870 9312 9312 0 dummy 0 0 9223372036854775807 9223372036854775807 0 dummy 0 0 9223372036854775807 9223372036854775807 0 dummy 0 0 9223372036854775807 9223372036854775807 0 numiptent 24 24 128 128 0

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• My computer freezes irregurarly

  - by Manhim

  My computer started to freeze at irregular times for 3 weeks now. What happens My computer freezes, the video stops. (No graphic glitches, it just stops) Sound keeps playing up to some time (Usually 10-30 seconds) then stops playing. Sometimes, randomly, the screen on my G-15 keyboard flickers and I see caracters not at the right places. Usually happens for about 1-2 seconds and a bit before my computer freezes. I have to keep the power button pressed for 4 seconds to shut my computer down. I still hear my hard drives and fans working. Sometimes it works with no problems for a full day, some other times it just keeps freezing each time I restart my computer and I have to leave it for the rest of the day. Sometimes my mouse freezes for a fraction of a second (Like 0.01 to 0.2 seconds) quite randomly, usually before it freezes. No errors spotted by the "Action center" unlike when I had problems with my last video card on this system (Driver errors). My G-15 LCD screen also freezes. What I did so far I have had similar problems in the past and I had changed my hard drive (It was faulty), so I tested my software RAID-0 array and it was faulty so I changed it. (I reinstalled Windows 7 with this part). I also tested with unplugging my secondary hard drive. My CPU was running at about 100 degree Celsius, I removed the dust between the fans and the heatsink and it's now between 50-60. I ran a CPU stress-test and it didn't freeze during the tests (using Prime95 on all cores) Ran a memory test (using memtest86+) for a single pass and there were no errors. Ran a GPU stress test with ati-tools and furmark and it didn't freeze during the tests. (No artefacts either) I had troubles with my graphic card when I got it, but I think that it got fixed with a driver update. I checked the voltages in my BIOS setup and they all seemed ok (±0.2 I think). I have ran on the computer without problems with Fedora 15 on an external hard drive (Appart that it couldn't load Gnome 3 and was reverting to Gnome 2, didn't want to install drivers since I use it on multiple computers) I used it to backup my files from the raid array to my 1TB hard drive for the reinstallation of Windows. (So the crashes only happenned on Windows) [The external hard drive is plugged directly on a SATA port] I contacted EVGA (My graphic card vendor) and pointed them on this question, I'm looking for an answer. Ran sensors on Fedora 15 and got this output: http://pastebin.com/0BHJnAvu When it happens When I play video games (Mostly) When I play flash games (Second most) When I'm looking at my desktop background (It rarely happens when I have a window open, but it does, sometimes) Specs Windows Seven x64 Home Premium Motherboard: M2N-SLI Deluxe CPU: AMD Phenom 9950 x2 @ 2.6GHz Memory: Kingston 4x2GB Dual Channel (Pretty basic memory sticks) Hard drives: Was 2x250GB (Western digital caviar) in raid-0 + 1TB (WD caviar black), I replaced the raid array with a 750GB (WD caviar black) [Yes I removed the array from the raid configurations] 750W Power supply No overcloking. Ever. There have been some power-downs like 4-5 weeks ago, but the problem didn't start immediately after. (I wasn't home, so my computer got shut-down) My current to-try list Change the thermal paste on my CPU. Change my graphic card with a temporary one and stress the computer. Change my power supply. In this situation, how can I successfully pin-point the current hardware problem? (If it's a hardware problem) Because I don't really have the budget to just forget and replace everything. I also don't really have hardware to test-replace current hardware.

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• How to diagnose computer lockups and freezes?

  - by Scott Mitchell

  I built a desktop computer a couple years back with the following specs: CPU: Intel Core 2 Quad Q9300 Yorkfield 2.5GHz 6 MB L2 Cache LGA 775 95W Quad-Core Processor BX80580Q9300 Motherboard: EVGA 122-CK-NF68-T1 LGA 775 NVIDIA nForce 680i SLI ATX Intel Motherboard Video Card: Two EVGA 256-P2-N758-TR GeForce 8600GT SCC 256 MB 128-bit GDDR3 PCI Express x16 SLI Supported Video Card PSU: SeaSonic S12 Energy Plus SS-550HT 550W ATX12V V2.3 / EPS12V V2.91 SLI Certified CrossFire Ready 80 PLUS Certified Active PFC Power Supply Memory: Two G.SKILL 4 GB (2 x 2 GB) 240-Pin DDR2 SDRAM DDR2 800 (PC2 6400) Dual Channel Kit Desktop Memory Model F2-6400CL5D-4GBPQ Since its inception, the machine has periodically locked up, the regularity having varied over the years from once a day to once a month. Typically, lockups happen once every few days. By "lockup" I mean my computer just freezes. The screen locks up, I can't move the mouse. Hitting keys on my keyboard that normally turn LEDs on or off on the keyboard (such as Caps Lock) no longer turn the LEDs on or off. If there was music playing at the time of the lockup, noise keeps coming out of the speakers, but it's just the current frequency/note that plays indefinitely. There is no BSOD. When such a lockup occurs I have to do a hard reboot by either turning off the computer or hitting the reset button. I have the most recent version of the NVIDIA hardware drivers, and update them semi-regularly, but that hasn't seemed to help. I am currently using Windows 7 x64, but was previously using Windows Server 2003 x64 and having the same lockup issues. My guess is that it's somehow video driver or motherboard related, but I don't know how to go about diagnosing this problem to narrow down which of the two is the culprit. Additional information re: cooling Regarding cooling... I've not installed any after-market cooling systems aside from two regular fans I scavenged from an older computer. The fan atop the CPU is the one that shipped with it. One of the two scavenged fans I added it located at the bottom tower of the corner, in an attempt to create some airflow from front to back. The second fan is pointed directly at the two video cards. SpeedFan installation and readings Per studiohack's suggestion, I installed SpeedFan, which provided the following temperature readings: GPU: 63C GPU: 65C System: 76C CPU: 64C AUX: 36C Core 0: 78C Core 1: 76C Core 2: 79C Core 3: 79C Update #3: Another Lockup :-( Well, I had another lockup last night. :-( SpeedFan reported the CPU temp at 38 C when it happened, and there was no spike in temperature leading up to the freeze. One thing I notice is that the freeze seems more likely to happen if I am watching a video. In fact, of the last 5 freezes over the past month, 4 of them have been while watching a video on Flickr. Not necessarily the same video, but a video nevertheless. I don't know if this is just coincidence or if it means anything. (As an aside, each night before bedtime my 2 year old daughter sits on my lap and watches some home videos on Flickr and, in the last month, has learned the phrase, "Uh oh, computer broke.") Update #4: MemTest86 and 3DMark06 Test Results: Per suggestions in the comments, I ran the MemTest86 overnight and it cycled through the 8 GB of memory 5 times without error. I also ran the 3DMark06 test without a problem (see my scores at http://3dmark.com/3dm06/15163549). So... what now? :-) Any further suggestions on what to check? Is there some way to get a stack trace or something when the computer locks like that? Resolution I have never did figure out the particular problems, but based on the suggestions here and elsewhere, I'm presuming it was a motherboard issue. In any event, I recently upgraded my system, buying a new motherbeard, PSU, CPU, and RAM, and that new rig has been working splendidly the past several weeks. I am using the same graphic cards as in the old setup, so I think it's safe to reason that they weren't the cause of the problem.

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• "The server closed the connection without sending any data"

  - by Toby

  Server setup The problem Diagnostic information What I've tried Specific Help needed 1. I have the following server setup: Debian Squeeze Linux 2.6.32-5-amd64 Apache2-mpm-prefork 2.2.16-6+squeeze10 PHP 5.3.3-7+squeeze14 This server is protected with the Suhosin Patch 0.9.9.1 Max Requests Per Child: 0 - Keep Alive: on - Max Per Connection: 100 Timeouts Connection: 300 - Keep-Alive: 15 Loaded Modules core mod_log_config mod_logio prefork http_core mod_so mod_alias mod_auth_basic mod_auth_digest mod_authn_file mod_authz_default mod_authz_groupfile mod_authz_host mod_authz_user mod_cgi mod_deflate mod_dir mod_env mod_mime mod_negotiation mod_php5 mod_reqtimeout mod_rewrite mod_setenvif mod_ssl mod_status Wordpress 3.4.2 (Upgrading to 3.5 soon :) 2. The problem When I restart the server (sudo shutdown -r now), going to any website page results in the following error from the web browser (in this case, Google Chrome, but other browsers also show the same error). This error can also occur an hour or so after all is working ok, seemingly randomly, which is my biggest concern as it means my server is not reliable: No data received Unable to load the web page because the server sent no data. Here are some suggestions: Reload this web page later. Error 324 (net::ERR_EMPTY_RESPONSE): The server closed the connection without sending any data. 3. Diagnostic information The apache error log contains the folowing entries: [Fri Dec 14 22:23:27 2012] [notice] child pid 1955 exit signal Floating point exception (8) [Fri Dec 14 22:23:27 2012] [notice] child pid 1956 exit signal Floating point exception (8) [Fri Dec 14 22:23:29 2012] [notice] child pid 1957 exit signal Floating point exception (8) [Fri Dec 14 22:23:30 2012] [notice] child pid 1958 exit signal Floating point exception (8) [Fri Dec 14 22:23:32 2012] [notice] child pid 1959 exit signal Floating point exception (8) [Fri Dec 14 22:23:32 2012] [notice] child pid 1960 exit signal Floating point exception (8) [Fri Dec 14 22:23:34 2012] [notice] child pid 1961 exit signal Floating point exception (8) [Fri Dec 14 22:23:34 2012] [notice] child pid 1962 exit signal Floating point exception (8) 4. What I've tried a) I can 'fix' the website temporarily by resetting the server twice (resetting it once does not work) using the following commands. NB: the 'reload' option does not work, I have to use restart twice. However, the error can reoccur sometime later. sudo /etc/init.d/apache2 restart sudo /etc/init.d/apache2 restart b) I have tried disabling suhosin by uninstalling php5-suhosin, but a php info page still shows "This server is protected with the Suhosin Patch 0.9.9.1". I have tried putting Suhosin into simulation mode by creating a file /etc/php5/apache2/conf.d/suhosin.ini containing: [suhosin] suhosin.simulation = On The php info page shows the suhosin.ini file in the list of "Additional .ini files parsed" but the php info page still shows "This server is protected with the Suhosin Patch 0.9.9.1" c) Increasing the PHP memory limit In /etc/php5/apache2/ : ; Maximum amount of memory a script may consume (128MB) ; http://php.net/memory-limit memory_limit = 512M d) Disabling all Wordpress plugins, and going back to the default theme. 5. Specific help needed I would very much like help in debugging what is going on here. I am not sure how to determine what processes are in the Apache error log which are exiting "[notice] child pid 1955 exit signal Floating point exception (8)", or what is causing them to exit. And whether suhosin is part of the problem (and how to disable it if it is). Thank you in advance for any advice or tips you can offer in helping me debug this.

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