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  • Windows Azure worker roles: One big job or many small jobs?

    - by Ryan Elkins
    Is there any inherent advantage when using multiple workers to process pieces of procedural code versus processing the entire load? In other words, if my workflow looks like this: Get work from queue0 and do A Store result from A in queue1 Get result from queue 1 and do B Store result from B in queue2 Get result from queue2 and do C Is there an inherent advantage to using 3 workers who each do the entire process themselves versus 3 workers that each do a part of the work (Worker 1 does 1 & 2, worker 2 does 3 & 4, worker 3 does 5). If we only care about working being done (finished with step 5) it would seem that it scales the same way (once you're using at least 3 workers). Maybe the big job is better because workers with that setup have less bottleneck issues?

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  • Logging in with WebFinger and OpenID

    - by Ryan
    I would like to apologize in advance for the ugly formatting. In order to talk about the problem, I need to be posting a bunch of URLs, but the excessive URLs and my lack of reputation makes StackOverflow think I could be a spammer. Any instance of 'ht~tp' is supposed to be 'http'. '{dot}' is supposed to be '.' and '{colon}' is supposed to be ':'. Also, my lack of reputation has prevented me from tagging my question with 'webfinger' and 'google-profiles'. Onto my question: I am messing around with WebFinger and trying to create a small rails app that enables a user to log in using nothing but their WebFinger account. I can succesfully finger myself, and I get back an XRD file with the following snippet: Link rel="ht~tp://specs{dot}openid{dot}net/auth/2.0/provider" href="ht~tp://www{dot}google{dot}com/profiles/{redacted}"/ Which, to me, reads, "I have an OpenID 2.0 login at the url: ht~tp://www{dot}google{dot}com/profiles/{redacted}". But when I try to use that URL to log in, I get the following error OpenID::DiscoveryFailure (Failed to fetch identity URL ht~tp://www{dot}google{dot}com/profiles/{redacted} : Error encountered in redirect from ht~tp://www{dot}google{dot}com/profiles/{redacted}: Error fetching /profiles/{Redacted}: Connection refused - connect(2)): When I replace the profile URL with 'ht~tps://www{dot}google{dot}com/accounts/o8/id', the login works perfectly. here is the code that I am using (I'm using RedFinger as a plugin, and JanRain's ruby-openid, installed without the gem) require "openid" require 'openid/store/filesystem.rb' class SessionsController < ApplicationController def new @session = Session.new #render a textbox requesting a webfinger address, and a submit button end def create ####################### # # Pay Attention to this section right here # ####################### #use given webfinger address to retrieve openid login finger = Redfinger.finger(params[:session][:webfinger_address]) openid_url = finger.open_id.first.to_s #openid_url is now: ht~tp://www{dot}google{dot}com/profiles/{redacted} #Get needed info about the acquired OpenID login file_store = OpenID::Store::Filesystem.new("./noncedir/") consumer = OpenID::Consumer.new(session,file_store) response = consumer.begin(openid_url) #ERROR HAPPENS HERE #send user to OpenID login for verification redirect_to response.redirect_url('ht~tp://localhost{colon}3000/','ht~tp://localhost{colon}3000/sessions/complete') end def complete #interpret return parameters file_store = OpenID::Store::Filesystem.new("./noncedir/") consumer = OpenID::Consumer.new(session,file_store) response = consumer.complete params case response.status when OpenID::SUCCESS session[:openid] = response.identity_url #redirect somehwere here end end end Is it possible for me to use the URL I received from my WebFinger to log in with OpenID?

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  • PDF permissions management with ASP.NET - Timeout Issue

    - by Ryan Smith
    I have a website that has several PDF files. I need to have quite a few of them locked down with the standard ASP.NET authentication (in a folder with web.config that denies anonymous users). I set PDF files to get handled by the ASP.NET worker process and added: <add type="System.Web.StaticFileHandler" path="*.pdf" verb="*" /> to my web.config, but for some reason they hang when downloading. I've seen this issue before on an old server, and for the live of me I can't remember what I did to solve it. Does anyone have any idea? Thanks.

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  • Interface Builder caching bad data (voodoo)

    - by Ryan Townshend
    Sometimes IB will hold onto old or bad references, and I cannot seem to remove or edit them. EDIT I have made this a wiki question with the intention of gathering more data on the phenomenon. Answers involving situations where other coders have encountered this are welcome. This happened to me again last night with a table controller. When I created a spike project to try and reproduce the error, the system worked the way I anticipated. Then back in the actual project the bad behavior continued, even if I remove the xib file and all controllers involved. Creating a whole new project with none of the original (problematic) xib and nib files worked correctly. This question is not about the specifics of this incident but about this type of incident in IB. Does anyone know more about this type of bad IB behaviour, and possibly a more stylish way to to eliminate it than nuking the project? Note, removing the offending IB files and recreating them in the same project has not solved this for me in the past, only whole new projects. Answers regarding examples of when/how this glitch has been observed/created are welcome as well.

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  • Where / how often do I need to show trademarks and registration marks for 3rd-party software?

    - by Aidan Ryan
    In the application my company publishes, we refer to 3rd-party software in several places: user manual, in the application UI itself, etc. Are we legally required to display the trademark or registration mark symbols next to the trademarked/registered names of 3rd-party software? If so, must they be displayed every time the name is mentioned, or is it sufficient to acknowledge the registration once (for example, in the application's splash screen or the introduction section of the user manual)?

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  • Why isn't the static constructor of the parent class called when invoking a method on a nested class

    - by Ryan Ische
    Given the following code, why isn't the static constructor of "Outer" called after the first line of "Main"? namespace StaticTester { class Program { static void Main( string[] args ) { Outer.Inner.Go(); Console.WriteLine(); Outer.Go(); Console.ReadLine(); } } public static partial class Outer { static Outer() { Console.Write( "In Outer's static constructor\n" ); } public static void Go() { Console.Write( "Outer Go\n" ); } public static class Inner { static Inner() { Console.Write( "In Inner's static constructor\n" ); } public static void Go() { Console.Write( "Inner Go\n" ); } } } }

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  • Map Custom URL protocol to HTTP (using NSURLProtocol?)

    - by Francisco Ryan Tolmasky I
    I have an application using a WebKit WebView and I'd like to map URL's that are loaded in this WebView with a custom URL protocol to a different HTTP URL. For example, say I am loading: custom://path/to/resource I would like to internally actually load: http://something-else.com/path/to/resource In other words, the custom protocol serves almost as a shorthand. I can't however use -webView:resource:willSendRequest:redirectResponse:fromDataSource:, because I want WebKit to actually believe this is the URL in question, not to simply redirect from one to the other. So far I've been attempting to use a custom NSURLProtocol subclass. However, this is proving trickier than I first thought because, at least to my understanding, I will have to do the actual loading myself in the NSURLProtocol subclass' startLoading method. I'd like a way to just hand off the work to the existing HTTP protocol loader, but I can't find an easy way to do this. Does anyone have a recommendation for this, or perhaps an alternative way to solve this issue? Thanks!

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  • Trying to set the message-id, in-reply-to, etc... in ActionMailer

    - by Ryan
    I'm working on an app that needs to be able to send out email updates and then route the reply back to the original item. All emails will come to a single address (this can't change unfortunately), and I need to be able to determine where they go. My initial thought was setting the message-id for the item so that it comes back as a References header. any ideas on how to accomplish this with ActionMailer?

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  • How do I get the collection of Model State Errors in ASP.NET MVC?

    - by Ryan Montgomery
    How do I get the collection of errors in a view? I don't want to use the Html Helper Validation Summary or Validation Message. Instead I want to check for errors and if any display them in specific format. Also on the input controls I want to check for a specific property error and add a class to the input. P.S. I'm using the Spark View Engine but the idea should be the same. So I figured I could do something like... <if condition="${ModelState.Errors.Count > 0}"> DispalyErrorSummary() </if> ....and also... <input type="text" value="${Model.Name}" class="?{ModelState.Errors["Name"] != string.empty} error" /> .... Or something like that. UPDATE My final solution looked like this: <input type="text" value="${ViewData.Model.Name}" class="text error?{!ViewData.ModelState.IsValid && ViewData.ModelState["Name"].Errors.Count() > 0}" id="Name" name="Name" /> This only adds the error css class if this property has an error.

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  • Website Link Injection

    - by Ryan B
    I have a website that is fairly static. It has some forms on it to send in contact information, mailing list submissions, etc. Perhaps hours/days after an upload to the site I found that the main index page had new code in it that I had not placed there that contained a hidden bunch of links in a invisible div. I have the following code the handles the variables sent in from the form. <?php // PHP Mail Order to [email protected] w/ some error detection. $jamemail = "[email protected]"; function check_input($data, $problem='') { $data = trim($data); $data = stripslashes($data); $data = htmlspecialchars($data); if ($problem && strlen($data) == 0) { die($problem); } return $data; } $email = check_input($_POST['email'], "Please input email address."); $name = check_input($_POST['name'], "Please input name."); mail($jamemail, "Mailing List Submission", "Name: " . $name . " Email: " .$email); header('Location: index.php'); ?> I have the following code within the index page to present the form with some Javascript to do error detection on the content of the submission prior to submission. <form action="sendlist.php" method="post" onSubmit="return checkmaill(this);"> <label for="name"><strong>Name: </strong></label> <input type="text" name="name"/><br /> <label for="email"><strong>Email: </strong></label> <input type="text" name="email"/><br /> &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;<input type="submit" value="Subscribe" style="width: 100px;"/> </form> At the end of the day, the source code where the injected hyperlinks is as follows: </body> </html><!-- google --><font style="position: absolute;overflow: hidden;height: 0;width: 0"> xeex172901 <a href=http://menorca.caeb.com/od9c2/xjdmy/onondaga.php>onondaga</a> <a href=http://menorca.caeb.com/od9c2/xjdmy/tami.php>tami</a> <a href=http://menorca.caeb.com/od9c2/xjdmy/shotguns.php>shotguns</a> <a href=http://menorca.caeb.com/od9c2/xjdmy/weir.php>weir</a> <a href=http://menorca.caeb.com/od9c2/xjdmy/copperhead.php>copperhead</a> <a href=http://menorca.caeb.com/od9c2/xjdmy/mpv.php>mpv</a> <a href=http://menorca.caeb.com/od9c2/xjdmy/brunei.php>brunei</a> <a href=http://menorca.caeb.com/od9c2/xjdmy/doreen.php>doreen</a>

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  • replace a whole page useing GreaseMonkey

    - by RYan
    is there a way to replace a whole web page using GreaseMonkey? basically a redirection but the address bar still shows the original address. i want the original address to show, but i want to load a modified web page from my hard drive without anyone knowing. thanks

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  • How to add a chart created in code behind to the rendered html page?

    - by Ryan
    I'm trying to create a .net charting control completely in the code behind and insert that chart at a specific location on the web page. Here is my html page: <%@ Page Language="C#" AutoEventWireup="true" CodeFile="Default.aspx.cs" Inherits="_Default" %> <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"> <html xmlns="http://www.w3.org/1999/xhtml"> <head runat="server"> <title></title> </head> <body> <form id="form1" runat="server"> <div id="chart"></div> </form> </body> </html> Here is the code behind: using System; using System.Drawing; using System.Web.UI.DataVisualization.Charting; public partial class _Default : System.Web.UI.Page { protected void Page_Load(object sender, EventArgs e) { //SET UP THE DATA TO PLOT double[] yVal = { 80, 20 }; string[] xName = { "Pass", "Fail" }; //CREATE THE CHART Chart Chart1 = new Chart(); //BIND THE DATA TO THE CHART Chart1.Series.Add(new Series()); Chart1.Series[0].Points.DataBindXY(xName, yVal); //SET THE CHART TYPE TO BE PIE Chart1.Series[0].ChartType = System.Web.UI.DataVisualization.Charting.SeriesChartType.Pie; Chart1.Series[0]["PieLabelStyle"] = "Outside"; Chart1.Series[0]["PieStartAngle"] = "-90"; //SET THE COLOR PALETTE FOR THE CHART TO BE A PRESET OF NONE //DEFINE OUR OWN COLOR PALETTE FOR THE CHART Chart1.Palette = System.Web.UI.DataVisualization.Charting.ChartColorPalette.None; Chart1.PaletteCustomColors = new Color[] { Color.Blue, Color.Red }; //SET THE IMAGE OUTPUT TYPE TO BE JPEG Chart1.ImageType = System.Web.UI.DataVisualization.Charting.ChartImageType.Jpeg; //ADD A PLACE HOLDER CHART AREA TO THE CHART //SET THE CHART AREA TO BE 3D Chart1.ChartAreas.Add(new ChartArea()); Chart1.ChartAreas[0].Area3DStyle.Enable3D = true; //ADD A PLACE HOLDER LEGEND TO THE CHART //DISABLE THE LEGEND Chart1.Legends.Add(new Legend()); Chart1.Legends[0].Enabled = false; } } I want to render the charting control inside the div with id="chart" Thanks for the help!

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  • Pushing app to heroku problem

    - by Ryan Max
    Hi, I am trying to push my app to heroku and I get the following message: $ heroku create Creating electric-meadow-15..... done Created http://electric-meadow-15.heroku.com/ | [email protected]:electric-meadow-1 5.git $ git push heroku master ! No such app as fierce-fog-63 fatal: The remote end hung up unexpectedly It's weird that I am getting this now, I have pushed the app to heroku many times without issue. the especially weird thing is, fierce-fog-63 is an old app that I made a deleted a long time ago. Why is it now that heroku is trying to push to this app that doesn't exist anymore, especially when I have created a new one. Any suggestions?

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  • How do I specify a keys password with MSBuild for the purpose of using Hudson?

    - by Brett Ryan
    We have just setup our hudson server to build .NET projects which seems to be working fine, however for projects that require a password when signing the assemblies I can not figure out how to tell hudson what the password is? For us the password is asked the first time a developer checks out the source code and they open with visual studio, how is this stored? Can we just place a secret file somewhere on the server?

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  • Jquery Drag-Drop (Getting element being dropped into)

    - by Ryan
    I am trying to detect which cell an object is being dropped into. <table> <tr> <td class="weekday">Sun</td> <td class="weekday">Mon</td> <td class="weekday">Tue</td> <td class="weekday">Wed</td> <td class="weekday">Thu</td> <td class="weekday">Fri</td> <td class="weekday">Sat</td> </tr> <tr> <td class="droppable">&nbsp;</td> <td class="droppable">&nbsp;</td> <td class="droppable">&nbsp;</td> <td class="droppable">&nbsp;</td> <td class="droppable">&nbsp;</td> <td class="droppable">&nbsp;</td> <td class="droppable">&nbsp;</td> </tr> </table> <div class="draggable">Drag Me</div> on drop, how do i determine which day the div was dropped into. thanks for any help.

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  • Dual slider control with custom skin

    - by Ryan French
    Hi All, I'm currently trying to create a page for users to select two points from a range, using a slide control. The first point in the range is when an alert will be sent to the user, the second point is a max limit. What I would like to do is have the bar colored green from the 0 point to the first slider point, then orange between the two sliders, and lastly red from the second slider up to the other end of the bar. Does anyone know of an easy was I can do this or of a slider control that can be skinned to do this?

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  • How do I correct "Commit Failed. File xxx is out of date. xxx path not found."

    - by Ryan Taylor
    I have recently run into a particularly sticky issue regarding committing the result of a merge in subversion. Our Subversion server is @ 1.5.0 and my TortoiseSVN client is now @ 1.6.1. I am trying to merge a feature branch back into my trunk. The merge appears to work okay; however, the commit fails with the following error message. Commit failed (details follow): File 'flex/src/com/penbay/invision/portal/services/http/soap/ReportServices/GetAllBldgsParamsByRegionBySiteResultEvent.as' is out of date '/svn/ibis/!svn/wrk/531d459d-80fa-ea46-bfb4-940d79ee6d2e/visualization/trunk/source/flex/src/com/penbay/invision/portal/services/http/soap/ReportServices/GetAllBldgsParamsByRegionBySiteResultEvent.as' path not found You have to update your working copy first. My working trunk is up to date. I have even checked out a new one into a different folder to make sure there wasn't any local cruft messing with the merge. I have done some more research into this and I think part of the problem is user error. I think our problems are: We had some developers committing work with a subversion client before 1.5 and some after. I believe this has the potential to corrupt the merge info. In other branches we have performed partial merges. That is, we did not always perform merges at the root of the branch. This was to facilitate updating Flex and .NET efforts within the same branch. We performed cyclic (reflexive) merges on our branch. This was done because we had multiple parallel branches and we wanted to periodically update our branch with the latest code in trunk. All of these things are explicitly not recommended by the Subversion book/team. We have learned our lesson and now know the best practices. However, we first need to merge and commit our latest branch. What it the best way to correct the problems we are encountering? Would deleting all the merge info in the trunk and branch be a viable solution? No. I have done this but it does not resolve the error that I am getting above.

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  • DataView.RowFilter an ISO8601

    - by Ryan
    I have a DataTable (instance named: TimeTable) whose DefaultView (instance named: TimeTableView) I am trying to use to filter based on a date. Column clock_in contains an ISO8601 formatted string. I would like to select all the rows in this DataTable/DefaultView between 2009-10-08T08:22:02Z and 2009-10-08T20:22:02Z. What would I have to filter on this criteria? I tried: TimeTableView = TimeTable.DefaultView; TimeTableView.RowFilter = "clock_in >= #2009-10-08T08:22:02Z# and #2009-10-08T20:22:02Z#"; This is not working for me. Am I operating on the wrong object or is my filter syntax wrong?

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  • bash: assign grep regex results to array

    - by Ryan
    Hello everyone, I am trying to assign a regular expression result to an array inside of a bash script but I am unsure whether that's possible, or if I'm doing it entirely wrong. The below is what I want to happen, however I know my syntax is incorrect: indexes[4]=$(echo b5f1e7bfc2439c621353d1ce0629fb8b | grep -o '[a-f0-9]\{8\}') such that: index[1]=b5f1e7bf index[2]=c2439c62 index[3]=1353d1ce index[4]=0629fb8b Any links, or advice, would be wonderful :)

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  • Intercepting hyperlinks in an embedded Word document

    - by Ryan
    Hello, I'm working on an app which uses embedded Word documents. We have a feature which allows them to insert a small clickable image into the doc - when the user clicks on it, we want the app to open another window based on some data specified by the user when the image was added. What the application does now is: When the image is inserted, the app creates a hyperlink for it and the data is used as the link destination The user ctrl+clicks on the image and the Word document the WindowSelectionChange event The app handles the WindowSelectionChange event and goes to open the specified window This approach worked fine with previous versions, when we had the 11.0 / Word 2003 interop dll's. We upgraded to 12.0/Word 2007 for the upcoming release, and in many cases the event is not firing when I click on the image - sometimes it does, sometimes it doesn't, and I'm descending into the cargo-cult world trying to figure out why - sometimes saving and re-opening the document works, sometimes killing the Word process and starting a new one fixes (or breaks) the feature. My guess is there's something going wrong with the WinSelChg event, but I'm not sure what. The usual process we have for applying the event handler is: try //remove the old one if any { ((Document)myAXFramerControl.ActiveDocument).Application.WindowSelectionChange -= new ApplicationEvents4_WindowSelectionChangeEventHandler(WSC_eventhandlerfunction); } catch{} ((Document)myAXFramerControl.ActiveDocument).Application.WindowSelectionChange += new ApplicationEvents4_WindowSelectionChangeEventHandler(WSC_eventhandlerfunction); Sometimes one or both of these will throw exceptions - usually a NullReferenceException when removing the handler. Adding the handler sometimes throws the "com object that has been separated from its underlying rcw cannot be used" exception, which I don't understand at all - my impression was that this only occurs when you, say, store a reference to the Word application or document and try to use it later. As it stands the WSC event handler is frequently never run; while I'm happy to fiddle with the app until it works once I can't really expect the same of the users who have been happily using this feature for a while now. Any ideas?

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  • Rails Heroku Migrate Unknown Error

    - by Ryan Max
    Hello. I am trying to get my app up and running on heroku. However once I go to migrate I get the following error: $ heroku rake db:migrate rake aborted! An error has occurred, this and all later migrations canceled: 530 5.7.0 Must issue a STARTTLS command first. bv42sm676794ibb.5 (See full trace by running task with --trace) (in /disk1/home/slugs/155328_f2d3c00_845e/mnt) == BortMigration: migrating ================================================= -- create_table(:sessions) -> 0.1366s -- add_index(:sessions, :session_id) -> 0.0759s -- add_index(:sessions, :updated_at) -> 0.0393s -- create_table(:open_id_authentication_associations, {:force=>true}) -> 0.0611s -- create_table(:open_id_authentication_nonces, {:force=>true}) -> 0.0298s -- create_table(:users) -> 0.0222s -- add_index(:users, :login, {:unique=>true}) -> 0.0068s -- create_table(:passwords) -> 0.0123s -- create_table(:roles) -> 0.0119s -- create_table(:roles_users, {:id=>false}) -> 0.0029s I'm not sure exactly what it means. Or really what it means at all. Could it have to do with my Bort installation? I did remove all the open-id stuff from it. But I never had any problems with my migrations locally. Additionally on Bort the Restful Authentication uses my gmail stmp to send confirmation emails...all the searches on google i do on STARTTLS have to do with stmp. Can someone point me in the right direction?

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  • Bioperl, equivalent of IO::ScalarArray for array of Seq objects?

    - by Ryan Thompson
    In perl, we have IO::ScalarArray for treating the elements of an array like the lines of a file. In BioPerl, we have Bio::SeqIO, which can produce a filehandle that reads and writes Bio::Seq objects instead of strings representing lines of text. I would like to do a combination of the two: I would like to obtain a handle that reads successive Bio::Seq objects from an array of such objects. Is there any way to do this? Would it be trivial for me to implement a module that does this? My reason for wanting this is that I would like to be able to write a subroutine that accepts either a Bio::SeqIO handle or an array of Bio::Seq objects, and I'd like to avoid writing separate loops based on what kind of input I get. Perhaps the following would be better than writing my own IO module? sub process_sequences { my $input = $_[0]; # read either from array of Bio::Seq or from Bio::SeqIO my $nextseq; if (ref $input eq 'ARRAY') { my $pos = 0 $nextseq = sub { return $input->[$pos++] if $pos < @$input}; } } else { $nextseq = sub { $input->getline(); } } while (my $seq = $nextseq->()) { do_cool_stuff_with($seq) } }

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  • EasyXDM passing data issue

    - by Jeff Ryan
    I'm using rpc with XDM, and I can send simple data back and forth easily between child and parent window. But it seems to be limited to simple strings and numbers. The demos on the site only use numbers. When I try to send a json ecoded string, I get a cross domain error. When I use cors, I can make ajax requests fine, but I can't display the child page in the iframe, because the data is returned and not rendered. My question is, how can I render an iframe, and pass complex data back and forth. Or maybe I am doing something wrong?

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  • Directly call distutils' or setuptools' setup() function with command name/options, without parsing

    - by Ryan B. Lynch
    I'd like to call Python's distutils' or setuptools' setup() function in a slightly unconventional way, but I'm not sure whether distutils is meant for this kind of usage. As an example, let's say I currently have a 'setup.py' file, which looks like this (lifted verbatim from the distutils docs--the setuptools usage is almost identical): from distutils.core import setup setup(name='Distutils', version='1.0', description='Python Distribution Utilities', author='Greg Ward', author_email='[email protected]', url='http://www.python.org/sigs/distutils-sig/', packages=['distutils', 'distutils.command'], ) Normally, to build just the .spec file for an RPM of this module, I could run python setup.py bdist_rpm --spec-only, which parses the command line and calls the 'bdist_rpm' code to handle the RPM-specific stuff. The .spec file ends up in './dist'. How can I change my setup() invocation so that it runs the 'bdist_rpm' command with the '--spec-only' option, WITHOUT parsing command-line parameters? Can I pass the command name and options as parameters to setup()? Or can I manually construct a command line, and pass that as a parameter, instead? NOTE: I already know that I could call the script in a separate process, with an actual command line, using os.system() or the subprocess module or something similar. I'm trying to avoid using any kind of external command invocations. I'm looking specifically for a solution that runs setup() in the current interpreter. For background, I'm converting some release-management shell scripts into a single Python program. One of the tasks is running 'setup.py' to generate a .spec file for further pre-release testing. Running 'setup.py' as an external command, with its own command line options, seems like an awkward method, and it complicates the rest of the program. I feel like there may be a more Pythonic way.

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  • How can I save BioPerl sequence nested features in genbank or embl format?

    - by Ryan Thompson
    In BioPerl, a sequence object can have any number of features, and each of these can have subfeatures nested within them. For example, a feature may be a complete coding sequence of a gene, and its subfeatures might be individual exons that are concatenated to form the full coding sequence. However, when I use BioPerl to write a sequence object to a file in genbank or embl format, only the top-level features are written to the file, not the sub-features nested within the top-level features. How can I store my subfeatures in sequence files? Should I just convert all my subfeatures into top-level features, and then reconstruct the tree structure next time I read in the sequence?

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