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  • help with xpath selecting

    - by fayer
    i've got an id attribute value for an element. i want to select only its children (not all descendants). i used $childElements = $xml-xpath('//entity[@id=212323]'); print_r($childElements); but that would select ALL descendants and print them out. i just want to select the 1 generation children. how could i do that? <entity id=212323> <this>asd</this> <this>asd</this> <this>asd</this> <this> <notThis>asd</notThis> <notThis>asd</notThis> <notThis>asd</notThis> </this> </entity>

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  • BioPython: extracting sequence IDs from a Blast output file

    - by Jon
    Hi, I have a BLAST output file in XML format. It is 22 query sequences with 50 hits reported from each sequence. And I want to extract all the 50x22 hits. This is the code I currently have, but it only extracts the 50 hits from the first query. from Bio.Blast import NCBIXM blast_records = NCBIXML.parse(result_handle) blast_record = blast_records.next() save_file = open("/Users/jonbra/Desktop/my_fasta_seq.fasta", 'w') for alignment in blast_record.alignments: for hsp in alignment.hsps: save_file.write('>%s\n' % (alignment.title,)) save_file.close() Somebody have any suggestions as to extract all the hits? I guess I have to use something else than alignments. Hope this was clear. Thanks! Jon

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  • Unexpected JAXB error

    - by Mark Lewis
    Hello, From the documentation it's clear I need to use the following to get a simple unmarshalling to occur from my XML file/schema: JAXBContext jc = JAXBContext.newInstance("PackageName"); where PackageName is my package name. I've looked on google for a bit to no avail, to find out why I'm then getting this runtime error: Line:Col[2:142]:cvc-elt.1: Cannot find the declaration of element 'myconfig'. Line:Col[2:142]:unexpected element (uri:"http://www.w3.org", local:"myconfig"). Expected elements are <{}myconfig> Caught UnmarshalException This occurs at the top of all my class files, including the ones the XJC plugin for eclipse created for me (which I then moved out of PackageName.PackageName which it automatically created): package PackageName; so why is this error occurring?

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  • SAXException: Unexpected end of file after null

    - by itsadok
    I'm getting the error in the title occasionally from a process the parses lots of XML files. The files themselves seem OK, and running the process again on the same files that generated the error works just fine. The exception occurs on a call to XMLReader.parse(InputStream is) Could this be a bug in the parser (I use piccolo)? Or is it something about how I open the file stream? No multithreading is involved. Piccolo seemed like a good idea at the time, but I don't really have a good excuse for using it. I will to try to switch to the default SAX parser and see if that helps. Update: It didn't help, and I found that Piccolo is considerably faster for some of the workloads, so I went back.

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  • How to setup a DotNetNuke Development Environment with Source Control?

    - by Joosh21
    My team is developing a new DotNetNuke web application and would like to know what is recommended to setup a development environment with source control and automated builds? We would like to keep the DNN source code separate from our custom modules and extensions source code. The DotNetNuke Compiled Module template for Visual Studio wants us to store the source code in the DesktopModules directory of the DNN source code and output to the DNN source code bin directory. Is this the recommended structure? I would rather keep the files in different locations, but then it becomes more difficult to run and debug locally as it would require an install of the module for each change. Also, how should an automated build deploy any changes? How have others set this up? Is there a recommended best practice?

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  • Configuration Files: how to read them into models?

    - by stacker
    I have a lot of configuration files in this format: <?xml version="1.0" encoding="utf-8"?> <XConfiguration> <XFile Name="file name 1" /> <XFile Name="name2" /> <XFile Name="name3" /> <XFile Name="name4" /> </XConfiguration> I want to use ConfigurationRepository.Get to get this object populated: public class XConfiguration { public XFile[] Files { get; set; } } I wonder what is the best way to do that. LinqToXml? I don't think ConfigurationManager is a smart option for this.

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  • maintaining a growing, diverse codebase with continuous integration

    - by Nate
    I am in need of some help with philosophy and design of a continuous integration setup. Our current CI setup uses buildbot. When I started out designing it, I inherited (well, not strictly, as I was involved in its design a year earlier) a bespoke CI builder that was tailored to run the entire build at once, overnight. After a while, we decided that this was insufficient, and started exploring different CI frameworks, eventually choosing buildbot. One of my goals in transitioning to buildbot (besides getting to enjoy all the whiz-bang extras) was to overcome some of the inadequacies of our bespoke nightly builder. Humor me for a moment, and let me explain what I have inherited. The codebase for my company is almost 150 unique c++ Windows applications, each of which has dependencies on one or more of a dozen internal libraries (and many on 3rd party libraries as well). Some of these libraries are interdependent, and have depending applications that (while they have nothing to do with each other) have to be built with the same build of that library. Half of these applications and libraries are considered "legacy" and unportable, and must be built with several distinct configurations of the IBM compiler (for which I have written unique subclasses of Compile), and the other half are built with visual studio. The code for each compiler is stored in two separate Visual SourceSafe repositories (which I am simply handling using a bunch of ShellCommands, as there is no support for VSS). Our original nightly builder simply took down the source for everything, and built stuff in a certain order. There was no way to build only a single application, or pick a revision, or to group things. It would launched virtual machines to build a number of the applications. It wasn't very robust, it wasn't distributable. It wasn't terribly extensible. I wanted to be able to overcame all of these limitations in buildbot. The way I did this originally was to create entries for each of the applications we wanted to build (all 150ish of them), then create triggered schedulers that could build various applications as groups, and then subsume those groups under an overall nightly build scheduler. These could run on dedicated slaves (no more virtual machine chicanery), and if I wanted I could simply add new slaves. Now, if we want to do a full build out of schedule, it's one click, but we can also build just one application should we so desire. There are four weaknesses of this approach, however. One is our source tree's complex web of dependencies. In order to simplify config maintenace, all builders are generated from a large dictionary. The dependencies are retrieved and built in a not-terribly robust fashion (namely, keying off of certain things in my build-target dictionary). The second is that each build has between 15 and 21 build steps, which is hard to browse and look at in the web interface, and since there are around 150 columns, takes forever to load (think from 30 seconds to multiple minutes). Thirdly, we no longer have autodiscovery of build targets (although, as much as one of my coworkers harps on me about this, I don't see what it got us in the first place). Finally, aformentioned coworker likes to constantly bring up the fact that we can no longer perform a full build on our local machine (though I never saw what that got us, either, considering that it took three times as long as the distributed build; I think he is just paranoically phobic of ever breaking the build). Now, moving to new development, we are starting to use g++ and subversion (not porting the old repository, mind you - just for the new stuff). Also, we are starting to do more unit testing ("more" might give the wrong picture... it's more like any), and integration testing (using python). I'm having a hard time figuring out how to fit these into my existing configuration. So, where have I gone wrong philosophically here? How can I best proceed forward (with buildbot - it's the only piece of the puzzle I have license to work on) so that my configuration is actually maintainable? How do I address some of my design's weaknesses? What really works in terms of CI strategies for large, (possibly over-)complex codebases?

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  • Creating CCD document from scratch (JAVA)

    - by Nikhil Patil
    Hi, I'm trying to build a CCD document. My application has some raw data which has to be converted into a CCD document. And I've no idea where I should start from!! From this thread I learned that MDHT and Braid can be used to create a CCD document. But thats all I could grasp. I thought that I need a CCD XSD, a java library which will transform my raw data into a CCD document using this XSD ( or may be the library itself takes care of it ). But I'm stuck at both. I suppose the CCD XSD has to be purchased. If I get hold of the XSD, how should I proceed ahead? I got really confused reading the Braid and MDHT sites. Sorry, I'm a complete nOOb in this domain. Can anyone guide me?

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  • WCF Deserialization Error

    - by BK
    ERROR - Exception: System.ServiceModel.Dispatcher.NetDispatcherFaultException Message: The formatter threw an exception while trying to deserialize the message: There was an error while trying to deserialize parameter services.gmrlive.com/JupiterMobile/2009/01/01/:StatusDetails. The InnerException message was 'There was an error deserializing the object of type X.X.X.Entities.StatusDetailCollection. Name cannot begin with the '5' character, hexadecimal value 0x35. Line 12, position 45.'. I am tracing the wcf logs but i am unable to see the actual xml message. It fails to log the malformed message. Can anyone help?

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  • Do all widgets in an Android layout file require layout_width and layout_height ?

    - by Eno
    I have a ListView composed of LinearLayouts. Inside each is an ImageView, TextView and another ImageView laid out horizontally: <?xml version="1.0" encoding="utf-8"?> <LinearLayout xmlns:android="http://schemas.android.com/apk/res/android" android:orientation="horizontal" android:layout_width="fill_parent" android:layout_height="wrap_content" > <ImageButton android:id="@+id/thumbnail" android:background="@color/white" android:paddingTop="10dip" android:paddingLeft="8dip" android:paddingBottom="10dip" /> <TextView android:id="@+id/title" android:background="@color/white" android:textColor="@color/bntext" android:paddingTop="10dip" android:paddingLeft="8dip" /> <ImageButton android:src="@drawable/green_arrow_small" android:background="@color/white" /> </LinearLayout>

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  • XStream or Simple

    - by Adeel Ansari
    I need to decide on which one to use. My case is pretty simple. I need to convert a simple POJO/Bean to XML, and then back. Nothing special. One thing I am looking for is it should include the parent properties as well. Best would be if it can work on super type, which can be just a marker interface. If anyone can compare these two with cons and pros, and which thing is missing in which one. I know that XStream supports JSON too, thats a plus. But Simple looked simpler in a glance, if we set JSON aside. Whats the future of Simple in terms of development and community? XStream is quite popular I believe, even the word, "XStream", hit many threads on SO. Thanks.

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  • distinct in Xpath ?

    - by Antoine
    Hi, I have this XML file, from which I'd like to count the number of users referenced in it. But they can appear in more than one category, and I'd like these duplicates not to be taken into account. In the example below, the query should return 3 and not 4. Is there a way in XPath to do so? Users are not sorted at all. <list> <group name='QA'> <user name='name1'>name1@email</user> <user name='name2'>name2@email</user> </group> <group name='DEV'> <user name='name3'>name3@email</user> <user name='name2'>name2@email</user> </group> </list>

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  • How to automate BlackBerry debugging with Eclipse?

    - by pajton
    I am developing application for BlackBerry 8900 and I am using features that force me to test/debug it on the real device. I am looking for a convenient way to be able to automate build-deploy-lanuch process. The process is: Package application & sign it Load it on the device Start debugging session in Eclipse With the newest version of BlackBerry plugin for Eclipse, step 1. is almost painless, but I would like to get rid of dialogs that I am missing some debug files. Step 2. and step 3. must be performed manually. Ideally I would like to turn it all into one script, Eclipse macro, whatever.... Has anyone tried something like this with any success?

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  • Convert doc/docx to semantic HTML

    - by sandstrom
    I would like to convert doc/docx documents to semantic HTML. Some wishes/requirements: Semantic HTML such that headers in the document are <h1>, <h2> etc., tables are <table> and so forth. Should preferably be possible to handle headings, lists, tables and images. Graphs and math formulas is a nice extra. • Doesn't have to be converted straight from doc/docx to html, could use an intermediary format, such as xml or docbook. • Should work programatically, and with large number of documents. The closest thing to a solution I've found so far is http://holloway.co.nz/docvert/index.html, but unfortunately there are many a few bugs, small user base and it can't handle a lot of documents. More of a proof of concept.

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  • XPATH - Select all child nodes with a specific attribute

    - by David
    Hi, what would be the xpath for the following: Find all child nodes with a specific attibute value but starting from a node with a specific attribute value. This is kind of related to a question I posted earlier about parsing and rdf xml file - I thought I had solved it but not quite yet. For example I am trying to parse and grab all of the rdf:about attribute values. I have this working fine. I need to add the following condition though - parsing needs to start after a specific rdf:about value is found. I am working in php and and using DomDocument and am using the following xpath query: $xpath-query('//@rdf:about') - it is finding all rdf:about attributes fine. I need to extend this to only find thos attributes that come after the node who rdf:about attribute is equal to something. Hope this makes sense.

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  • Tableview lags, and glitches while scrolling due to images loading in each cell

    - by Luis Tovar
    Hey Guys! Me again! Can someone provide me with some example code of how to properly load images in a tablecell without making the tableview glitch while scrolling. For example if you look at fandago's app, when scrolling through their movies you can see that the image is loaded asynchronously so that the scroll isnt jumping, lagging, or glitchy. Thanks in advance. Right now I have the images loading just fine but it is glitchy as i scroll because the images are loading on main thread. I am creating an app very similar to fandango. PS I am downloading these images via xml. (you know what i mean) Thanks!!

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  • Bamboo Versioning

    - by reddy
    Hello guyz, I have a situation where i need to maintain version information of my builds. By googling i found limited information. one way is to create a version file on source control and keep updating. other is to use the source control revision number. final one is to use bamboo build number. i haven't implemented anyone of this before. colud anyone point out the pros and cons of each method. Thank you, Reddy. Please atleast tell me which method have u used to implement the same. Thnq..

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  • Find elements based on xsd type with lxml

    - by joet3ch
    I am trying to get a list of elements with a specific xsd type with lxml 2.x and I can't figure out how to traverse the xsd for specific types. Example of schema: <xsd:element name="ServerOwner" type="srvrs:string90" minOccurs="0"> <xsd:element name="HostName" type="srvrs:string35" minOccurs="0"> Example xml data: <srvrs:ServerOwner>John Doe</srvrs:ServerOwner> <srvrs:HostName>box01.example.com</srvrs:HostName> The ideal function would look like: elements = getElems(xml_doc, 'string90') def getElems(xml_doc, xsd_type): ** xpath or something to find the elements and build a dict return elements

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  • How to select items from XmlList

    - by Cen
    My Flash designer is reading an XML stream I'm sending back to the browser (I'm a C# dev). We have this working fine. He is then selecting into an XMLList where a element has its id a certain value i.e. . This is also working just fine. In this XmlList, are Events, that look a little something like this: event startdate enddate end event I don't know how to use the formatting here - but each of those items is an element. startdate would have a value such as 04/02/2010 and enddate 6/30/2010. Now, from this XmlList I do have of Events, I need to select all Events where a new variable myDate, falls in between the startdate and enddate. I'm not sure how to do this in AS3 - can anyone help me? Thank you very much in advance!

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  • Which is the best alternative for Java Serialization?

    - by Alotor
    I'm currently working on a project which needs to persist any kind of objects (of which implementation we don't have any control) so these objects could be recovered afterwards. We can't implement a ORM because we can't restrict the users of our library at development time. Our first alternative was to serialize it with the Java default serialization but we had a lot of trouble recovering the objects when the users started to pass different versions of the same object (attributes changed types, names, ...). We have tried with the XMLEncoder class (transforms an object into a XML), but we have found that there is a lack of functionality (doesn't support Enums for example). Finally, we also tried JAXB but this impose our users to annotate their classes. Any good alternative?

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  • Can XMLCatalog be used for schema imports?

    - by jon077
    Can you use XMLCatalog to resolve xsds in schema import statements? If so, what is the preferred/best practice? I want to package the xsds in a jar, so using a relative schemaLocation has not worked. So far I am trying to do something like: SchemaFactory factory = SchemaFactory .newInstance(XMLConstants.W3C_XML_SCHEMA_NS_URI); XMLCatalogResolver catalogResolver = new XMLCatalogResolver( new String[]{"/path/to/catalog.xml"}); factory.setResourceResolver(catalogResolver); Schema schema = factory.newSchema(new StreamSource(ClassLoader .getSystemResourceAsStream("config.xsd"))); Without much luck.

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  • gcc std=gnu++0x option

    - by Neeraj
    Hi everyone, I need to compile a C++ code that uses std=gnu++0x option to the g++ compiler in the Makefile.am , As this option is compatible only with gcc 4.3 and above, the build crashes on my machine where i have gcc 4.2. What are my alternatives ? I tried removing that option from the Makefile.am but that reports some other error. Do i need to install gcc 4.3 or above? How can I do it in ubuntu hardy through apt-get ? Thanks.

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  • Looking for the most painless non-RDBMS storage method in C#

    - by NateD
    I'm writing a simple program that will run entirely client-side. (Desktop programming? do people still do that?) and I need a simple way to store trivial amounts of data in a structured form, but really don't see any need to use a database system. What's more, some of the data needs to be serialized and passed around to different users, like some kind of "file" or perhaps a "document". (has anyone ever done that before?) So, I've looked at using .Net DataSets, LINQ, direct XML manipulation, and they all seem like they would get the job done, but I would like to know before I dive into any of them if there's one method that is generally regarded as easier to code than others. As I said, the amount of data to be stored is trivial, even if one hundred people all used the same machine we're not talking about more than 10 MB, so performance is not as large a concern as is codeability/maintainability. Thank you all in advance!

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  • What are some tips for troubleshooting builds of complicated software?

    - by Goose Bumper
    Sometimes I want to build Python or GCC from scratch just for fun, but I can't parse the errors I get, or don't understand statements like "libtool link error # XYZ". What are some tricks that unix/systems gurus use to compile software of this size from scratch? Of course I already do things like read config.log (if there is one), google around, and post in newsgroups. I'm looking for things that either make the process go smoother or get me more information about the error to help me understand and fix it. It's a little tough to get this information sometimes, because some compile bugs can be quite obscure. What can I do at that point?

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  • XSD NewDataSet Namespace?

    - by Ian
    I'm running XSD on an XML file and getting something strange. Depending on the depth of elements it produces a 'NewDataSet' element which will then is prefixed in Visual Studio to my auto-generated classes which is something I don't want. I've got quite a complex structure and am just trying to add a simple version element or attribute which is causing the problem. The simplest demo I could come up with is this. <A> <B>Text</B> </A> Running this through XSD says there is an element called 'NewDataSet' which may or may not appear and will prefix namespaces. <A> <B> <C>Text</C> </B> </A> This example works as expected and there is no magic 'NewDataSet' element in the generated XSD file.

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