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  • Simulate stochastic bipartite network based on trait values of species - in R

    - by Scott Chamberlain
    I would like to create bipartite networks in R. For example, if you have a data.frame of two types of species (that can only interact across species, not within species), and each species has a trait value (e.g., size of mouth in the predator allows who gets to eat which prey species), how do we simulate a network based on the traits of the species (that is, two species can only interact if their traits overlap in values for instance)? UPDATE: Here is a minimal example of what I am trying to do. 1) create phylogenetic tree; 2) simulate traits on the phylogeny; 3) create networks based on species trait values. # packages install.packages(c("ape","phytools")) library(ape); library(phytools) # Make phylogenetic trees tree_predator <- rcoal(10) tree_prey <- rcoal(10) # Simulate traits on each tree trait_predator <- fastBM(tree_predator) trait_prey <- fastBM(tree_prey) # Create network of predator and prey ## This is the part I can't do yet. I want to create bipartite networks, where ## predator and prey interact based on certain crriteria. For example, predator ## species A and prey species B only interact if their body size ratio is ## greater than X.

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  • BlackBerry threading model

    - by Rory Fitzpatrick
    I've read a lot of comments mention in passing that the BlackBerry threading model deviates from the Java standard and can cause issues, but no amount of googling has enlightened me on what this means exactly. I've been developing a fairly large business application for the BlackBerry and, although I don't really have any previous experience with Java multi-threaded applications, haven't come across any issue that we've been able to blame on threading, other than what we caused ourselves. Can someone describe exactly how the BlackBerry threading model is different, and how I as a developer should take that into account? Obviously any links on the topic would also be great.

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  • Post and Comment with the same Model.

    - by xRobot
    I have created a simple project where everyone can create one or more Blog. I want to use this models for Post and for Comment: class Post_comment(models.Model): content_type = models.ForeignKey(ContentType) object_id = models.PositiveIntegerField(_('object ID')) content_object = generic.GenericForeignKey() # Hierarchy Field parent = models.ForeignKey('self', null=True, blank=True, default=None, related_name='children') # User Field user = models.ForeignKey(User) # Date Fields date_submitted = models.DateTimeField(_('date/time submitted'), default = datetime.now) date_modified = models.DateTimeField(_('date/time modified'), default = datetime.now) title = models.CharField(_('title'), max_length=60, blank=True, null=True) post_comment = models.TextField(_('post_comment')) markup = models.IntegerField(choices=MARKUP_CHOICES, default=DEFAULT_MARKUP, null=True, blank=True) if it is a comment the parent is not null. So in most case the text field will contain a little bit of text. Can I use this model for both Post and Comment ?

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  • Django populate select field based on model query

    - by Mike
    I have the following model class DNS(models.Model): domain = models.ForeignKey(Domain) host_start = models.CharField(max_length=150, blank=True, null=True) type = models.SmallIntegerField(max_length=1, default=0, choices=DNS_CHOICE) value = models.SmallIntegerField(max_length=3, default=0, blank=True, null=True) ip = models.IPAddressField(blank=True, null=True) host_end = models.ForeignKey("DNS", blank=True, null=True) other_end = HostnameField(max_length=150, blank=True, null=True) created = models.DateTimeField(auto_now_add=True) sticky = models.BooleanField(default=0) other = models.BooleanField(default=0) When I try to init a form with just foreignkeys on host_end.. it always shows all entries in the DNS table domain = Domain.objects.get(id=request.GET['domain'], user=request.user, active=1) form = DNSFormCNAME(initial={'ip': settings.MAIN_IP, 'type': request.GET['type'], 'host_end': DNS.objects.filter(domain=domain)}) I just want the zones that match that domain.. not all domains.

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  • Python design mistakes

    - by Andrea
    A while ago, when I was learning Javascript, I studied Javascript: the good parts, and I particularly enjoyed the chapters on the bad and the ugly parts. Of course, I did not agree with everything, as summing up the design defects of a programming language is to a certain extent subjective - although, for instance, I guess everyone would agree that the keyword with was a mistake in Javascript. Nevertheless, I find it useful to read such reviews: even if one does not agree, there is a lot to learn. Is there a blog entry or some book describing design mistakes for Python? For instance I guess some people would count the lack of tail call optimization a mistake; there may be other issues (or non-issues) which are worth learning about.

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  • Backbone JS central model where all views can use

    - by chchrist
    I am new to backbone js and require js. I use requirejS to organize my backbone code into modules. I don't know if this has any importance to what I want though. I want to have a central model where all my views will have access to. They should be able to get and set values. I don't want to use it as each view model though. I need to keep in memory search options, user status (logged in/out) etc. Any ideas? EDIT Maybe the answer is here? Share resources across different amd modules

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  • Django - Expression based model constraints

    - by rtmie
    Is it possible to set an expression based constraint on a django model object, e.g. If I want to impose a constraint where an owner can have only one widget of a given type that is not in an expired state, but can have as many others as long as they are expired. Obviously I can do this by overriding the save method, but I am wondering if it can be done by setting constraints, e.g. some derivative of the unique_together constraint WIDGET_STATE_CHOICES = ( ('NEW', 'NEW'), ('ACTIVE', 'ACTIVE'), ('EXPIRED', 'EXPIRED') ) class MyWidget(models.Model): owner = models.CharField(max_length=64) widget_type = models.CharField(max_length = 10) widget_state = models.CharField(max_length = 10, choices = WIDGET_STATE_CHOICES) #I'd like to be able to do something like class Meta: unique_together = (("owner","widget_type","widget_state" != 'EXPIRED')

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  • How do I define a foreign key that points to a class of a different name in ActiveRecord with Rails?

    - by Mark
    Hi there, I have a model Follow that defines a user_id and a followed_user_id. If you've used Twitter, this should make sense. I'm trying to make followed_user_id point to a User model, so I can access the user that is being followed through f.followed_user (in the same way that if I have an Entry with belongs_to :user and a user_id column I can use entry.user to get the user.) How can I do this? Thanks!

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  • filter queryset based on list, including None

    - by jujule
    Hi all I dont know if its a django bug or a feature but i have a strange ORM behaviour with MySQL. class Status(models.Model): name = models.CharField(max_length = 50) class Article(models.Model) status = models.ForeignKey(status, blank = True, null=True) filters = Q(status__in =[0, 1,2] ) | Q(status=None) items = Article.objects.filter(filters) this returns Article items but some have other status than requested [0,1,2,None] looking at the sql query : SELECT [..] FROM `app_article` LEFT OUTER JOIN `app_status` ON (`app_article`.`status_id` = `app_status`.`id`) WHERE (`app_article`.`status_id` IN (1, 2) OR `app_status`.`id` IS NULL) ORDER BY [...] the OR app_status.id IS NULL part seems to be the cause. if i change it to OR app_article.status_id IS NULL it works correctly. How to deal with this ? Thanx.

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  • inheritance from the django user model results in error when changing password

    - by Jerome
    I inherited form the django user model like so: from django.db import models from django.contrib.auth.models import User, UserManager from django.utils.translation import ugettext_lazy as _ class NewUserModel(User): custom_field_1 = models.CharField(_('custom field 1'), max_length=250, null=True, blank=True) custom_field_2 = models.CharField(_('custom field 2'), max_length=250, null=True, blank=True) objects = UserManager() When i go to the admin and add an entry into this model, it saves fine, but below the "Password" field where it has this text "Use '[algo]$[salt]$[hexdigest]' or use the change password form.", if i click on the "change password form' link, it produces this error Truncated incorrect DOUBLE value: '7/password' What can i do to fix this?

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  • To Switch To The Design View Of A Windows Form

    - by June
    Hi Friends I create new project in Windows Form Application using Visual Studio in VB.Net. I place some controls on my form. I don't write any code at this time. I close this project. When i open this project again , i found Form1.vb. I double-click that file , but the design view doesn't appear. I also find Form1.Designer.vb. What in this file is code. How can i switch to Design View of Form1 ? I need to write some codes for that form's objects like Button Click Event. June

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  • How do I use a named_scope to filter records in my model

    - by kibyegon
    I have a model "Product" with a "description" field. Now I want to have a link in the index page that when clicked will show all products where the description is blank (empty). In the model I have defined a named_scope like this named_scope :no_description, :conditions => { :description => "" } I have checked that the named_scope works by calling Product.no_description.count on the console. As far as I know, the controller is then supposed to handle the filter request from the link on the "index" action but be able to distinguish it from the default which is view all products. def index @products = Product.all ... My problem is getting the controller handle the different request, what route to setup for the link on the view and the actual link on the view. Hope I explained my problem.

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  • ASP.NET MVC Model Binders, html id

    - by Stacey
    Using the Model Binders in ASP.NET MVC 2.0, you can do something like this... [DisplayName("User Name")] public string Name { get; set; } <%: Html.TextBoxFor( m => m.Name ) :%> and then in your HTML, you get a result like this.. <label for="UserName">User Name</label> <input type="text" id="UserName" name="UserName" /> That works fine, but I want to have better control over the HTML ID. Is there any way to do this through the model binding method?

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  • Design ideas for

    - by ZeroVector
    I need to design and I'm looking in to using WCF to accomplish this. Basically here is how I have it: Server process: Generate list of files to transfer across multiple FTP/SFTP sites in to a queue. Client(s): Talk to server to get files to transfer. Transfer the files acquired. All the data necessary to transfer the files will be present. Once transferred successfully, notify the server to remove it from the queue. Also, make sure no other client is trying to perform the transfer. Are there are any good articles/design patterns to use? I think it sounds like a good candidate for WCF since ideally it would be load balanced against a few machines. Development will be in C#/.NET 3.5.

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  • Change find() type of contained model or array transformation

    - by Ramon Marco Navarro
    I have the following model associations: Response->Survey Response->Question Response->Choice Survey->Question Question->Choice I want to create a form where I could answer all the questions for one survey. So I used the following to return the needed data: $questions = $this->Response->Question->find('all', array( 'conditions' => array('survey_id' => $id), 'contain' => array('Choice') ) ); Sample output for debug($questions). Questions Is there a contain() option so that an associated model returns in the find('list') format so that I could use: foreach($question as $questions) { $this-Form-select('field_name', $question['Choice']); } If no option is available, how could I do this using PHP's builting array methods? PS: The foreach block won't turn into a code block. If someone could edit and fix it, please do so and delete this line. Thank you.

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  • How do I pass a javascript parameter to an asp.net MVCmodel from within a View?

    - by Josh
    Hi everyone! I am having an issue trying to access a list property on a model from within a javascript. My basic situation is this: I have an ArticleController and an ArticleViewModel. An Article has a number of properties, one of which is Text, which is just a string that contains the contents of the article. The ArticleViewModel contains a Pages property, which is just a List of Strings. When the ArticleViewModel constructor is called, I populate the Pages list by dividing up the article text based on some delimeters. I have a View which inherits the ArticleViewModel type. What I want to do is only display one page at a time, and then when the user clicks a page number (from a list at the bottom of the article), I want to use javascript to load that page into the #dynamicContent div. The problem: I can't seem to pass a parameter to the Model.Pages property from within javascript... Is this possible? I get an error stating, "Expression Expected" when I try what I have below. I don't want to have to worry about AJAX calls or anything like that since I already have the entire article... I just need a way to access each individual page from within the javascript function. Alternatively, if there is a better solution for "paginating" an article so that I can load each articlePage without having to refresh the entire html page, I would certainly be open to that as well. Any help would be much appreciated!! Thanks for your time! ArticleView Code: Script at the top of the view: function loadPage(pageNumber) { try { alert(pageNumber); $('#dynamicContent').html('<%=Model.Pages(' + pageNumber + ') %>'); } catch (e) { alert('in here'); alert(e.description); } } HTML for view: [...] <div id="articleBody"> <div id="dynamicContent"> <%=Model.Pages(0)%> </div> </div> [...] Page Links at bottom of page: [...] <div> <ul style="display:block"> <li style="display:inline"> <a href="#articleTitle" onclick="loadPage(0)"> 1 </a> </li> <li style="display:inline"> <a href="#articleTitle" onclick="loadPage(1)"> 2 </a> </li> </ul> </div>

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  • Access to related Objects inside a model propery

    - by aliem
    Hi, I just run into some problems with django models. Example code is better than any word: class Cart(models.Model): updated_at = models.DateTimeField(auto_now=True) created_at = models.DateTimeField(auto_now_add=True) def __unicode__(self): return u'date %s;'%(self.created_at) def __str__(self): return self.__unicode__() def _total_items(self): """ Totale n di oggetti """ a = 0 for i in self.items.all: a += i.quantity return a total_items = property(_total_items) class Item(models.Model): cart = models.ForeignKey(Cart) quantity = models.PositiveIntegerField() def __unicode__(self): return u'product %s'%(self.id) def __str__(self): return self.__unicode__() but, when i call the cart property here's what i get in the python console: >>> a.total_items Traceback (most recent call last): File "<console>", line 1, in <module> File "models.py", line 49, in _total_items for i in self.item_set.all: TypeError: 'RelatedManager' object is not callable

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  • Flex 4: Loading XML into a Model Actionsript Class

    - by Steve
    I'm trying to create an actionscript class to serve as a data model for my Flex app. I already have a formatted XML file to read from, and when I was simply declaring the data service in my MXML app I used this code inside the declarations: I'm now trying to create a model class and can't seem to get the same functionality. I've tried importing mx.rpc.http.HTTPService but i think this is different. And using the XML class doesn't seem to allow the ability to define a source url. I'm assuming that I am able to declare a public var inside my class that will read this XML source file as I had done in the main app. If this is possible, how do I do it?

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  • About presenter pattern in rails. is a better way to do it?

    - by Totty
    I have in my model: def presenter @presenter ||= ProfilePresenter.new(self) @presenter end The ProfilePresenter is a class that has methods like, get_link(), get_img_url(size), get_sex(), get_relationship_status() and other methods that have not to do with the model, not even with the controller but is used multiple times in the view. So now i use them by doing this: Profile.presenter.get_link # or Profile.presenter.get_img_url('thumb') # returns the path of the image. is not used to make a db query

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  • c# .net MVC4 Model to represent table or form

    - by Matthew Chambers
    Hello I am a little confused with regards to models in mvc 4 and thought someone may be able to point me in the right direction. This would be most appreciated. For example if i have a table that has the following fields [StringLength(100, ErrorMessage = "The {0} must be at least {2} characters long.", MinimumLength = 5)] public string UserName { get; set; } [Required(ErrorMessage="Email Address is Required")] [StringLength(15, ErrorMessage = "Email Address must be between {0} and {1} in size",MinimumLength = 5 )] [DataType(DataType.EmailAddress)] [Display(Name="Email")] public string Email { get; set; } [MaxLength(25)] [Display(Name="Mobile Telephone Number")] public string Mobile {get;set;} [MaxLength(500)] [Display(Name="Headline")] public string Headline {get;set;} [Required] [StringLength(200)] [Display(Name = "First Name")] public string FirstName {get;set;} [Required] [StringLength(200)] [Display(Name="Surname")] public string Surname { get; set;} public virtual int? DayOfBirthId { get; set; } public virtual DayOfBirth DayOfBirth { get; set; } public virtual int? MonthOfBirthId { get; set; } public virtual MonthOfBirth MonthOfBirth { get; set; } public virtual int? YearOfBirthId { get; set; } public virtual YearOfBirth YearOfBirth{get;set;} This is my user profile table in the database. However I would like a form that the user registers to the site with. When they first register i do not need all the details such as telephone all i really need is there username, email address and password. Do i create another model for this. Or do i have one model and on the controller set the fields to null or empty string that are not required on registration. I have validation also so would this be set for data that has not been entered on the form. My question is ultimately should all forms represent models- should the database be redesigned to meet this required. Or should the controller set the values that are not required. Or should there be another model that represents the form be created which maps to this table. I am a little confused on this and clarification of anyone would be most appreciated.

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