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• Why am I getting programs stuck in log_wait_commit under Linux?

  - by staticsan

  There is something subtly wrong with my Linux install that I just can't locate. It is Ubuntu Lucid Lynx (10.04) 64-bit. Hardware is a Dell Optiplex 960: Intel Core 2 Quad CPU, 8Gb of RAM, 2x 300Gb HDDs. /home is ext2 on one disk and everything else is on the other (/ is also ext3). I have VirtualBox running a 64-bit Vista image for Outlook calendaring, but the heavyweight apps are IntelliJ, NetBeans, MySQL and Opera. Opera also loads my mail (IMAP) of which there is over 10,000 messages. The problem is that Opera stalls for a few seconds from time-to-time. Watching the process list shows it's in log_wait_commit which means (as far as I have figured out) the filesystem is holding things up. Sometimes I can make this happen by doing a subversion update, but usually it happens for no reason I can see. It usually happens to Opera, but I've seen NetBeans go under, too. It doesn't make the app crash - it's just completely unresponsive for a few seconds. Googling has not helped. The closest I got was to remove the sync attribute in the file system. This achieved nothing. On the advice of a Linux guru friend, I lowered /proc/sys/vm/dirty_writeback_centisecs to 300, but that didn't do anything, either. And it was all he could think of. What is going on and can I fix it? (And how?)

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• Good support to multiple desktops AND multiple monitors in Linux (Ubuntu)?

  - by Somebody still uses you MS-DOS

  I'm starting to have A LOT of opened windows in my machine. Sometimes within a project, I have e-mail/task management/personal e-mail/twitter, and a lot of different opened applications/terminal in my Linux environment. Nowadays I have 4 worspaces: Corporate management (e-mail) and corporate messenger; Work (Documents, Requisites) Dev (Development, All gVim windows, terminal and Firefox for development) Personal (Personal stuff: personal e-mail, delicious, twitter and so on) Sometimes it would be interesting to have different workspaces to projects instead of this configuration I have nowadays that are classes of work (bad name, I know, but I think you got the idea). I'm starting to think about using two monitors: one with Corporate Management, Work and Personal. The second monitor is only the development state: each workspace here is about a project being worked on instead of groups of works like before. A workspace may be implementing different classes for example. My question is: I just want to change to a second monitor using the mouse. I want to still be able to change workspaces in the same monitor using keyboard shortcuts. The keyboard shortcuts wouldn't change monitors, just worskpaces on the same monitor. Does Linux (Ubuntu 10.04 Lucid Lynx) support this envisioned setup? If so, how?

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• An increase to 3 Gig of RAM slows down Ubuntu 10.04 LTS

  - by williepabon

  I have Ubuntu 10.04 running from an external hard drive (installed on an enclosure) connected via USB port. Like a month or so ago, I increased RAM on my pc from 2 Gigs to 3 Gigs. This resulted on extremely long boot times and slow application loads. While I was understanding the nature of my problem, I posted various threads on this forum ( Questions # 188417, 188801), where I was advised to gather speed tests, and other info on my machine. I was also suggested that I might have problems with the RAM installed. Initially, I did not consider that possibility because: 1) I did a memory test with a diagnostic program from DELL (My pc is from Dell) 2) My pc works fine with Windows XP (the default OS), no problems with memory 3) My pc works fine when booting with Ubuntu 10.10 memory stick, no speed problems 4) My pc works fine when booting with Ubuntu 11.10 memory stick, no speed problems Anyway, I performed the memory tests suggested. But before doing it, and to check out any possibility of hardware issues on the hard drive, I did the following: (1) purchased a new hard drive enclosure and moved my hard drive to it, (2) purchased a new USB cable and used it to connect my hard drive/enclosure setup to a different USB port on my pc. Then, I performed speed tests with 1 Gig, 2 Gigs and 3 Gigs of RAM with my Ubuntu 10.04 OS. Ubuntu 10.04 worked well when booted with 1 Gig or 2 Gigs of RAM. When I increased to 3 Gigs, it slowed down to a crawl. I can't understand the relationship between an increase of 1 Gig and the effect it has in Ubuntu 10.04. This doesn't happen with Ubuntu 10.10 and 11.10. Unfortunately for me, Ubuntu 10.04 is my principal work operating system. So, I need a solution for this. Hardware and system information: DELL Precision 670 2 internal SATA Hard drives Audigy 2 ZS audio system Factory OS: Windows XP Professional SP3 NVidia 8400 GTS video card More info: williepabon@WP-WrkStation:~$ uname -a Linux WP-WrkStation 2.6.32-38-generic #83-Ubuntu SMP Wed Jan 4 11:13:04 UTC 2012 i686 GNU/Linux williepabon@WP-WrkStation:~$ lsb_release -a No LSB modules are available. Distributor ID: Ubuntu Description: Ubuntu 10.04.4 LTS Release: 10.04 Codename: lucid Speed test with the 3 Gigs of RAM installed: williepabon@WP-WrkStation:~$ sudo hdparm -tT /dev/sdc [sudo] password for williepabon: /dev/sdc: Timing cached reads: 84 MB in 2.00 seconds = 41.96 MB/sec Timing buffered disk reads: 4 MB in 3.81 seconds = 1.05 MB/sec This is a very slow transfer rate from a hard drive. I will really appreciate a solution or a work around for this problem. I know that that there are users that have Ubuntu 10.04 with 3 Gigs or more of RAM and they don't have this problem. Same question asked on Launchpad for reference.

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• clear explanation sought: throw() and stack unwinding

  - by Jerry Gagelman

  I'm not a programmer but have learned a lot watching others. I am writing wrapper classes to simplify things with a really technical API that I'm working with. Its routines return error codes, and I have a function that converts those to strings: static const char* LibErrString(int errno); For uniformity I decided to have member of my classes throw an exception when an error is encountered. I created a class: struct MyExcept : public std::exception { const char* errstr_; const char* what() const throw() {return errstr_;} MyExcept(const char* errstr) : errstr_(errstr) {} }; Then, in one of my classes: class Foo { public: void bar() { int err = SomeAPIRoutine(...); if (err != SUCCESS) throw MyExcept(LibErrString(err)); // otherwise... } }; The whole thing works perfectly: if SomeAPIRoutine returns an error, a try-catch block around the call to Foo::bar catches a standard exception with the correct error string in what(). Then I wanted the member to give more information: void Foo::bar() { char adieu[128]; int err = SomeAPIRoutine(...); if (err != SUCCESS) { std::strcpy(adieu,"In Foo::bar... "); std::strcat(adieu,LibErrString(err)); throw MyExcept((const char*)adieu); } // otherwise... } However, when SomeAPIRoutine returns an error, the what() string returned by the exception contains only garbage. It occurred to me that the problem could be due to adieu going out of scope once the throw is called. I changed the code by moving adieu out of the member definition and making it an attribute of the class Foo. After this, the whole thing worked perfectly: a try-call block around a call to Foo::bar that catches an exception has the correct (expanded) string in what(). Finally, my question: what exactly is popped off the stack (in sequence) when the exception is thrown in the if-block when the stack "unwinds?" As I mentioned above, I'm a mathematician, not a programmer. I could use a really lucid explanation of what goes onto the stack (in sequence) when this C++ gets converted into running machine code.

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• How do you turn on the customizable gnome-panel features (like gnome-applets) in Precise?

  - by chriv

  I resurrected a broken laptop today. I took out the HDD, put it in a USB 3.0 enclosure, and created a VM that would use it. It was running lucid. I took a screenshot of the desktop before I started "do-release-upgrade", because from experience, I will never have my GUI back the way I want it again. I know how to install gnome-panel to get back the "Gnome Classic" session option. I know how to put my minimize, maximize, and close buttons back in the upper-right hand corner of windows (where they belong). I know how to use gdm instead of lightdm. Unity gets worse in every version (and the other desktop OS is going to be even worse with Metro). Here's what I don't know (in order of importance): 1. How do you make the panels in gnome (gnome-panel, to be precise) customizable again (like they were in older versions of Ubuntu)? 2. How do you install applets in the panels now (right-click is now ignored)? 3. How can you customize all of the window elements (like you could in older versions of Ubuntu)? I can't remember much about maverick, natty, or oneiric (except their names), so I don't know exactly when I lost these capabilities. Edit: (no screenshot), my StackExchange reputation (on other StackExchange sites) doesn't carry over to this site, so I can't post the screenshot. Take a look at the panels in the screen hot. They are nice, compact, and VERY functional (disk mounter applet, frequently used shortcuts, workspaces, show desktop, kill window, and trash icons, etc.) Notice how small the fonts (and how little real estate they waste). You can't notice the compact title bars, fonts, and window icons in this screen shot (since I redacted the rest of the desktop), but it's the same story there. Please help. I don't want to learn another distro, but Ubuntu gets less customizable with every "upgrade." Screenshot (not an inline image, since I don't have the reputation yet)... i.stack.imgur.com/puoUT.png

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• Varnish 3.0.2 and ISPConfig 3.0.4

  - by Warren Bullock III

  I followed the tutorial The Perfect Server - Ubuntu 11.10 [ISPConfig 3] here. I'm running an Ubuntu 11.04 (Natty Narwhal) server with 1024 RAM on Rackspace. I've gone through and updated to ISPConfig 3.0.4. Everything has been working great up to now when I decided to try and install Varnish. Initially I did an install of Varnish by issuing: apt-get update apt-get upgrade apt-get install varnish Apparently the version that was installed was Varnish 2.x so I went back and added the repositories for packages provided by varnish-cache.org curl http://repo.varnish-cache.org/debian/GPG-key.txt | apt-key add - echo "deb http://repo.varnish-cache.org/ubuntu/ lucid varnish-3.0" >> /etc/apt/sources.list apt-get update apt-get install varnish This updated my version of Varnish to 3.0.2 I then proceeded to make the following changes: vim /etc/default/varnish change DAEMON_OPTS to port 80: vim /etc/apache2/ports.conf NameVirtualHost *:8000 Listen 8000 vim /etc/apache2/sites-available/default <VirtualHost *:8000> vim /etc/apache2/sites-available/ispconfig.vhost Listen 8080 NameVirtualHost *:8080 <VirtualHost _default_:8080> I then proceeded to set my other vhosts to use 8000 (the apache2 port) so with all this set I reset both Apache2 and Varnish to test. I used Firebug in Firefox 11.0 The output from what I see doesn't seem to indicate that Varnish is working completely correct: First of all I see: X-Varnish 1644834493 but I've heard that unless you have two timestamps side by side than it's probably not working correctly so for example I was thinking I might see something like: X-Varnish 1644834493 1644837493 Also if I noticed this in the output which seems to be inconstant: X-Drupal-Cache MISS There are times when it will say HIT as well.... So the question here that I have is I think Varnish is partially working, however, why don't I see two timestamps on X-Varnish like I'm thinking I should and does the output of the screenshot I have look correct? If Varnish isn't working can someone tell me what I might being doing wrong? Thanks in advance.

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• Webmin / Virtualmin running php as www-data, is locked out of viewing .htaccess and writing

  - by Kirill

  I've asked this on the virtualmin forums, but haven't had any help from there. Recently, "something" happened and it seems that the apache service has gone a bit weird. What it does: it runs all apache traffic as www-data and sometimes spawns the php5-cgi process as www-data, this is a problem because all the domain users own their directories and default permissions don't let www-data write to these folders (file uploads are dead) or read .htaccess (permalinks are broken in wordpress). I've googled this for about a week straight now, tried pretty much everything I could find and achieved nothing. The only thing that I think might actually be the cause of all this is this page: http:// - i.imgur.com/NYW3x.png (got shut down by the spam filter) So I figured if I set it to "default", this might magically start working again, but all it does is "crash" apache (all websites timeout). I figure it's something to do with the "mpm" module or something, but I can't find anything relevant in the settings to modify for it to work. Can someone please point me in the right direction? System info: Webmin version 1.580 Kernel and CPU Linux 2.6.35.4-rscloud on x86_64 Virtualmin version 3.90.gpl GPL Ubuntu 10.04 LTS (Lucid) A couple screenshots of top http://i.imgur.com/U2DTK.png http://i.imgur.com/sNPKs.png

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• kvm works only when kvm-intel is unloaded

  - by Sathya

  I am new to kvm. I have this strange issue. But before explaining the issue, here is my set up. I try to install VM on my Host which is a Acer Laptop 5720 Has T7500 Intel processor. The cpu flags indicate that Virtualization is supported. I run Ubuntu 10.04 (lucid) on it. It comes with kvm. Now coming to the issue - I dont get any errors while executing "sudo modprobe kvm-intel". So I presume my processor does indeed support hardware virtualization. I use virt-manager and create a VM on which I install ubuntu from an *.iso file. When I start the VM it says it is running. No signs of any trouble. I can see the domain list in "virsh list". But when I try to connect to the VM thru VNC, all I get to see is a blank screen (no cursor). There is no response to any key press. I changed the video mode etc. Tried all different combinations but none work. But strangely, if I shutdown the vm an virt-manager and then unload the module by doing "sudo modprove -r kvm-intel", everything works fine. ie., I can see the screen via VNC. I am able to install the OS and so on. So what does this mean ? IS hardware virtualization not supported ? How come there is no error anywhere ? dmesg | grep kvm doesnt report anything. Can someone throw light on what excatly is happening ?

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• nginx does not use variables set in /etc/environment on system reboot, but does when restarted from shell

  - by Dave Nolan

  I have a Rails app running on nginx/passenger. It restarts happily in a shell using sudo /etc/init.d/nginx stop|start|restart. But Passenger throws an error when the system is rebooted: "Missing the Rails #{version} gem". But GEM_HOME and GEM_PATH are both set in /etc/environment so surely they would be available to all processes during reboot? /etc/environment PATH="/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/bin/X11:/usr/games" GEM_HOME=/var/lib/gems/1.8 GEM_PATH=/var/lib/gems/1.8 /etc/init.d/nginx #! /bin/sh ### BEGIN INIT INFO # Provides: nginx # Required-Start: $all # Required-Stop: $all # Default-Start: 2 3 4 5 # Default-Stop: 0 1 6 # Short-Description: starts the nginx web server # Description: starts nginx using start-stop-daemon ### END INIT INFO PATH=/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin DAEMON=/opt/nginx/sbin/nginx NAME=nginx DESC=nginx test -x $DAEMON || exit 0 # Include nginx defaults if available if [ -f /etc/default/nginx ] ; then . /etc/default/nginx fi set -e case "$1" in start) echo -n "Starting $DESC: " start-stop-daemon --start --quiet --pidfile /var/log/nginx/$NAME.pid \ --exec $DAEMON -- $DAEMON_OPTS echo "$NAME." ;; stop) echo -n "Stopping $DESC: " start-stop-daemon --stop --quiet --pidfile /var/log/nginx/$NAME.pid \ --exec $DAEMON echo "$NAME." ;; restart|force-reload) echo -n "Restarting $DESC: " start-stop-daemon --stop --quiet --pidfile \ /var/log/nginx/$NAME.pid --exec $DAEMON sleep 1 start-stop-daemon --start --quiet --pidfile \ /var/log/nginx/$NAME.pid --exec $DAEMON -- $DAEMON_OPTS echo "$NAME." ;; reload) echo -n "Reloading $DESC configuration: " start-stop-daemon --stop --signal HUP --quiet --pidfile /var/log/nginx/$NAME.pid \ --exec $DAEMON echo "$NAME." ;; *) N=/etc/init.d/$NAME echo "Usage: $N {start|stop|restart|force-reload}" >&2 exit 1 ;; esac exit 0 $ opt/nginx/sbin/nginx -v nginx version: nginx/0.7.67 Ubuntu lucid

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• ext4 filesystem corruption -- maybe hardware error?

  - by pts

  I'm getting these errors in dmesg after about half an hour after I turn on the computer: [ 1355.677957] EXT4-fs error (device sda2): htree_dirblock_to_tree: inode #1318420: (comm updatedb.mlocat) bad entry in directory: directory entry across blocks - block=5251700offset=0(0), inode=1802725748, rec_len=179136, name_len=32 [ 1355.677973] Aborting journal on device sda2-8. [ 1355.678101] EXT4-fs (sda2): Remounting filesystem read-only [ 1355.690144] EXT4-fs error (device sda2): htree_dirblock_to_tree: inode #1318416: (comm updatedb.mlocat) bad entry in directory: directory entry across blocks - block=5251699offset=0(0), inode=2194783952, rec_len=53280, name_len=152 [ 1356.864720] EXT4-fs error (device sda2): htree_dirblock_to_tree: inode #1312795: (comm updatedb.mlocat) bad entry in directory: directory entry across blocks - block=5251176offset=1460(13748), inode=1432317541, rec_len=208208, name_len=119 /dev/sda is an SSD, and it's using the noop scheduler. /etc/fstab entry: UUID=acb4eefa-48ff-4ee1-bb5f-2dccce7d011f / ext4 errors=remount-ro,noatime,discard,user_xattr 0 1 System information: $ cat /proc/mounts | grep /dev/sd /dev/sda1 /boot ext2 rw,noatime,errors=continue 0 0 $ cat /etc/lsb-release DISTRIB_ID=Ubuntu DISTRIB_RELEASE=10.04 DISTRIB_CODENAME=lucid DISTRIB_DESCRIPTION="Ubuntu 10.04.3 LTS" $ uname -a Linux leetpad 2.6.35-30-generic-pae #61~lucid1-Ubuntu SMP Thu Oct 13 21:14:29 UTC 2011 i686 GNU/Linux I've run memtest for 7 hours, it didn't found any memory errors. Any obvious ideas what can go wrong in this case? The most reasonable thing I can imagine is that the SSD is silently dropping some write requests, which eventually leads to an EXT4 filesystem inconsistency (but no disk I/O errors). How can this happen? Is there a relevant configuration option I should ensure to be set correctly? What tools should I use to diagnose the hardware failures? Would it be possible to diagnose the SSD failure without overwriting data?

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• Redis 2.0.3 would not let go of deleted appendonly.aof file after BGREWRITEAOF

  - by Alexander Gladysh

  Ubuntu 10.04.2, Redis 2.0.3 (more details at the end of the question). My AOF file for Redis is getting too large, to the point where it soon would threaten to take whole free disk space on my small-HDD VPS box: $ df -h Filesystem Size Used Avail Use% Mounted on /dev/xvda 32G 24G 6.7G 78% / $ ls -la total 3866688 drwxr-xr-x 2 redis redis 4096 2011-03-02 00:11 . drwxr-xr-x 29 root root 4096 2011-01-24 15:58 .. -rw-r----- 1 redis redis 3923246988 2011-03-02 00:14 appendonly.aof -rw-rw---- 1 redis redis 32356467 2011-03-02 00:11 dump.rdb When I run BGREWRITEAOF, the AOF file shrinks, but disk space is not freed: $ ls -la total 95440 drwxr-xr-x 2 redis redis 4096 2011-03-02 00:17 . drwxr-xr-x 29 root root 4096 2011-01-24 15:58 .. -rw-rw---- 1 redis redis 65137639 2011-03-02 00:17 appendonly.aof -rw-rw---- 1 redis redis 32476167 2011-03-02 00:17 dump.rdb $ df -h Filesystem Size Used Avail Use% Mounted on /dev/xvda 32G 24G 6.7G 78% / Sure enough, Redis is still holding the deleted file: $ sudo lsof -p6916 COMMAND PID USER FD TYPE DEVICE SIZE/OFF NODE NAME ... redis-ser 6916 redis 7r REG 202,0 3923957317 918129 /var/lib/redis/appendonly.aof (deleted) ... redis-ser 6916 redis 10w REG 202,0 66952615 917507 /var/lib/redis/appendonly.aof ... How can I workaround this issue? I can restart Redis this time, but I would really like to avoid doing this on a regular basis. Note that I can not upgrade to 2.2 (upgrade to 2.0.4 is feasible though). More information on my system: $ lsb_release -a No LSB modules are available. Distributor ID: Ubuntu Description: Ubuntu 10.04.2 LTS Release: 10.04 Codename: lucid $ uname -a Linux my.box 2.6.32.16-linode28 #1 SMP Sun Jul 25 21:32:42 UTC 2010 i686 GNU/Linux $ redis-cli info redis_version:2.0.3 redis_git_sha1:00000000 redis_git_dirty:0 arch_bits:32 multiplexing_api:epoll process_id:6916 uptime_in_seconds:632728 uptime_in_days:7 connected_clients:2 connected_slaves:0 blocked_clients:0 used_memory:65714632 used_memory_human:62.67M changes_since_last_save:8398 bgsave_in_progress:0 last_save_time:1299014574 bgrewriteaof_in_progress:0 total_connections_received:17 total_commands_processed:55748609 expired_keys:0 hash_max_zipmap_entries:64 hash_max_zipmap_value:512 pubsub_channels:0 pubsub_patterns:0 vm_enabled:0 role:master db0:keys=1,expires=0 db1:keys=18,expires=0

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• Unable to connect to shared (iscsitarget) dvd-rw drive on ubuntu karmic box

  - by develop7

  Preface: I have desktop with DVD-RW drive that runs primarily on Linux (namely Ubuntu 9.10). My wife has netbook that rins Windows XP with no cd/dvd drive. There's also LAN through our ADSL modem/router. I've "ported" (actually, I've just grabbed sources and ran dpkg-buildpackage) iscsitarget package from Ubuntu Lucid to Karmic (here are packages), installed it (sudo aptitude install iscsitarget; sudo m-a a-i iscsitarget) and configured it in the following way (/etc/ietd.conf): Target iqn.2020-01.local.develop7-desktop:storage.disc.dvdrw Lun 0 Path=/dev/sr0,Type=blockio #I've skipped commented lines Also, I've opened port 3260 with ufw: $ sudo ufw status | grep 3260 3260 ALLOW 192.168.1.0/24 But (here's the trouble) I still can't connect to this target from Windows box. Microsoft Software iSCSI Initiator tells "Logon failure" upon connect attempt. After unsuccessful connection attempt I've noticed this line in dmesg | tail's output: iscsi_trgt: ioctl(299) invalid ioctl cmd c078690d So the question is — what's wrong with my config/iSCSI target/whatever else? Or, in short — what I'm doing wrong? Thanks in advance.

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• Unable to connect to shared (iscsitarget) dvd-rw drive on ubuntu karmic box

  - by Develop7

  Intro I have desktop with DVD-RW drive that runs primarily on Linux (namely Ubuntu 9.10). My wife has netbook that rins Windows XP with no cd/dvd drive. There's also LAN through our ADSL modem/router. I've "ported" (actually, I've just grabbed sources and ran dpkg-buildpackage) iscsitarget package from Ubuntu Lucid to Karmic (here are packages), installed it (sudo aptitude install iscsitarget; sudo m-a a-i iscsitarget) and configured it in the following way (/etc/ietd.conf): Target iqn.2020-01.local.develop7-desktop:storage.disc.dvdrw Lun 0 Path=/dev/sr0,Type=blockio #I've skipped commented lines Also, I've opened port 3260 with ufw: $ sudo ufw status | grep 3260 3260 ALLOW 192.168.1.0/24 Problem But (here's the trouble) I still can't connect to this target from Windows box. Microsoft Software iSCSI Initiator screams "Logon failure" upon connect attempt, and, respectively, fails to connect. After unsuccessful connection attempt I've noticed this line in dmesg | tail's output: iscsi_trgt: ioctl(299) invalid ioctl cmd c078690d Question So the question is — what's wrong with my config/iSCSI target/whatever else? Or, in short — what I'm doing wrong? Thanks in advance.

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• Where is my CPU usage going?

  - by Josh

  My Ubuntu 10.04 Lucid virtual machine is saying it's at 100% CPU usage... but all I'm running is Thunderbird. According to top, CPU usage should be ~25.9%... How do I interpret this conflicting output from top? top - 13:55:26 up 3:35, 4 users, load average: 3.03, 2.59, 2.48 Tasks: 178 total, 1 running, 177 sleeping, 0 stopped, 0 zombie Cpu(s): 16.0%us, 79.7%sy, 0.0%ni, 0.0%id, 0.0%wa, 1.3%hi, 3.0%si, 0.0%st Mem: 509364k total, 479108k used, 30256k free, 3092k buffers Swap: 2096440k total, 58380k used, 2038060k free, 225116k cached PID USER PR NI VIRT RES SHR S %CPU %MEM TIME+ COMMAND 7708 jnet 20 0 480m 109m 17m S 18.4 22.1 21:59.14 thunderbird-bin 4615 jnet 20 0 5488 1268 1040 S 2.3 0.2 5:00.03 nx-rootless-ses 7124 jnet 20 0 56688 27m 4812 S 2.0 5.5 6:35.09 nxagent 6724 nx 20 0 9628 1400 636 S 1.6 0.3 3:26.59 sshd 30106 root 20 0 2544 1236 908 R 0.7 0.2 0:00.33 top 19 root 20 0 0 0 0 S 0.3 0.0 0:22.45 ata/0 38 root 20 0 0 0 0 S 0.3 0.0 0:05.53 scsi_eh_1 345 root 20 0 0 0 0 S 0.3 0.0 0:04.72 kjournald 1719 root 20 0 3260 1192 944 S 0.3 0.2 0:17.36 vmware-guestd 1 root 20 0 2804 1356 940 S 0.0 0.3 0:01.99 init 2 root 20 0 0 0 0 S 0.0 0.0 0:00.01 kthreadd 3 root RT 0 0 0 0 S 0.0 0.0 0:00.00 migration/0 4 root 20 0 0 0 0 S 0.0 0.0 0:00.15 ksoftirqd/0 5 root RT 0 0 0 0 S 0.0 0.0 0:00.00 watchdog/0 ... Specifically I'm referring to the fact that the CPU usage totals show 0% idle time: Cpu(s): 16.0%us, 79.7%sy, 0.0%ni, 0.0%id, 0.0%wa, 1.3%hi, 3.0%si, 0.0%st Yet when adding up the percentages in the %CPU column I get 25.9%, not 100%!

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• Upstart multiple instances of service not working

  - by Dax

  I started playing with MongoDB on Lucid. Now I would like to run a DB and Config server on the same box. They both use the same binary to launch, but with different config files and running on different ports. All directories for log and lib is split so one goes to mongodb and the other to mongoconf. Each process can be started without any problems on their own. start mongodb stop mongodb start mongoconf stop mongoconf But if I try to start both, the second one would just start and exit. Using 'initctl log-priority debug' I got the following in the logs. Jan 6 12:44:12 mongo4 init: event_finished: Finished started event Jan 6 12:44:12 mongo4 init: job_process_handler: Ignored event 1 (1) for process 5690 Jan 6 12:44:12 mongo4 init: mongoconf (mongoconf) main process (5690) terminated with status 1 Jan 6 12:44:12 mongo4 init: mongoconf (mongoconf) goal changed from start to stop Jan 6 12:44:12 mongo4 init: mongoconf (mongoconf) state changed from running to stopping man 5 init shows that you can use instance names to differentiate the two. I tried using 'instance mongoconf' in the on upstart script and 'instance mongodb' in the other one, and it still fails. I can manually start the other process, so there is definitely no conflicts on port numbers or directories. Any ideas on what to try or how to get output on why it is 'terminated with status 1'? Thanx

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• System Slow After Uprading Ubuntu

  - by Aragon N

  I have an Ubuntu network machine which has release of 10.04.1 LTS Lucid. On this system I have Apache, PostgreSQL and django. For some app. development I have to install PGP and php-curl. Due to being on network, I have exported a VMware machine to the Internet and firstly I have upgraded the system and then installed php5 packages on it. I don't know is it all about django or apache configuration. Maybe some Apache settings had changed. In this case in apache where I have to look at ? After all replacing it with its old place, I see that the new system query is slow according to another. Old system query time : 140 ms New system query time : 9.11 s I have checked /etc/network interface and it seems there is no problem. I have checked /etc/resolv.conf and it seems OK I have checked /etc/nsswitch.conf and only host section is different from old one which old system has hosts: files mdns4_minimal [NOTFOUND=return] dns mdns4 and then I have checked time host -t A services.myapp.com and I got real 0m0.355s user 0m0.010s sys 0m0.020s and I have checked apache2 HostnameLookups : find /etc/apache2/ -type f | xargs grep -i HostnameLookups It returned : /etc/apache2/apache2.conf:# HostnameLookups: Log the names of clients or just their IP addresses /etc/apache2/apache2.conf:HostnameLookups Off and now what can I have to check for boosting my system as before?

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• aufs user permissions

  - by user56395

  Anyone know why this doesn't work? Is this user error, AUFS feature or bug maybe: rac@tecraS1:~/tmp$ mkdir orig tmp au rac@tecraS1:~/tmp$ sudo mount -t tmpfs none tmp rac@tecraS1:~/tmp$ sudo chown -R rac tmp rac@tecraS1:~/tmp$ echo hello > orig/hello rac@tecraS1:~/tmp$ sudo mount -t aufs -o br=tmp:orig none au rac@tecraS1:~/tmp$ ls -al au total 8 drwxrwxrwt 4 rac root 100 2011-01-06 13:53 . drwxr-xr-x 5 rac rac 4096 2011-01-06 13:52 .. -rw-r--r-- 1 rac rac 6 2011-01-06 13:53 hello rac@tecraS1:~/tmp$ rm au/hello rm: cannot remove `au/hello': Operation not permitted rac@tecraS1:~/tmp$ Seems the aufs files were created as root and user has no access to them: rac@tecraS1:~/tmp$ sudo rm au/hello rac@tecraS1:~/tmp$ ls -al tmp total 4 drwxrwxrwt 4 rac root 120 2011-01-06 13:53 . drwxr-xr-x 5 rac rac 4096 2011-01-06 13:52 .. -r--r--r-- 2 root root 0 2011-01-06 13:53 .wh.hello -r--r--r-- 2 root root 0 2011-01-06 13:53 .wh..wh.aufs drwx------ 2 root root 40 2011-01-06 13:53 .wh..wh.orph drwx------ 2 root root 40 2011-01-06 13:53 .wh..wh.plnk rac@tecraS1:~/tmp$ OS is the latest Lucid with 2.6.35-23 stock kernel. No idea about aufs version. Using sudo chown -R rac tmp/.wh* fixes the problem. Thanks for looking.

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• Puzzling TCP performance over 3G / UMTS

  - by lemonsqueeze

  I'm using 3G as my primary internet connection, and TCP over this thing is getting more puzzling every day. For example: Downloading from kernel.org is crazy fast: $wget http://www.kernel.org/pub/linux/kernel/v3.0/linux-3.6.8.tar.bz2 increases to ~500kB/s after a few secs ! Some servers are incredibly slow, for instance www.graphic-pc.com:Same thing, downloading a big file with wget it starts at ~30kB/s for a split second, then collapses to 5-10k or even worse. Web browsing is decent but somewhat unreliable. Randomly, a page will take really long to load or even fail to load, but a reload can succeed almost immediately. Now, by chance i started playing with OpenVPN over UDP on top of the 3G connection, and OMG suddenly everything's extremely fast !Same www.graphic-pc.com now shoots at 100-200kB/s ! What's going on here ??? How come it is so much better with the VPN than without ?? And why does graphic-pc.com crawl when kernel.org flies ?Something to do with my tcp stack (or the server), or some buggy router in between ?? Notes: Setup is laptop running Ubuntu Lucid and a Huawei 3G dongle (So direct pppd connection). I can reproduce this pretty much any time during the day and I'm not moving, so it's clearly not cell environment or internet congestion. (although kernel.org without VPN sometimes does worse in the evening, 60kB or so - but still 500kB with VPN !) For 2) wireshark shows retransmitted packets, dup ack's, even out of order sometimes. I've tried playing with different /proc/sys/net/ipv4 parameters (tcp_rmem, window_scaling, tcp_congestion...) doesn't seem to make a difference. Update: Tried under windows 7 (no VPN) with some interesting results: tcp settings : default tcp_optimizer kernel.org : 10 kB/s 20 kB/s graphic-pc.com: 8 kB/s 70 kB/s ! tcp_optimizer turned on ctcp among other things. Have to check what os graphic-pc.com is running, my bet is linux's tcp_westwood and ms ctcp don't mix well here...

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• Mysql start fails with Operating System error 13

  - by curious

  I have XAMPP on my Ubuntu Lucid system and everything worked fine. But there seems to be some problem now and mysql wouldn't start. I had tried to recover a few Drupal databases and hence copied the raw files to /opt/lampp/var/mysql folder like all other database folders. And, I guess that could have caused the problem. I am pasting the last few lines of the error log. Someone please help me out. 100814 15:17:47 mysqld_safe Starting mysqld daemon with databases from /opt/lampp/var/mysql 100814 15:17:47 [Note] Plugin 'FEDERATED' is disabled. 100814 15:17:47 [ERROR] Can't open shared library 'libpbxt.so' (errno: 0 API version for STORAGE ENGINE plugin is too different) 100814 15:17:47 [Warning] Couldn't load plugin named 'PBXT' with soname 'libpbxt.so'. 100814 15:17:48 InnoDB: Operating system error number 13 in a file operation. InnoDB: The error means mysqld does not have the access rights to InnoDB: the directory. InnoDB: File name /opt/lampp/var/mysql/ibdata1 InnoDB: File operation call: 'open'. InnoDB: Cannot continue operation.

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• Upstart multiple instances of service not working.

  - by Dax

  I started playing with MongoDB on Lucid. Now I would like to run a DB and Config server on the same box. They both use the same binary to launch, but with different config files and running on different ports. All directories for log and lib is split so one goes to mongodb and the other to mongoconf. Each process can be started without any problems on their own. start mongodb stop mongodb start mongoconf stop mongoconf But if I try to start both, the second one would just start and exit. Using 'initctl log-priority debug' I got the following in the logs. Jan 6 12:44:12 mongo4 init: event_finished: Finished started event Jan 6 12:44:12 mongo4 init: job_process_handler: Ignored event 1 (1) for process 5690 Jan 6 12:44:12 mongo4 init: mongoconf (mongoconf) main process (5690) terminated with status 1 Jan 6 12:44:12 mongo4 init: mongoconf (mongoconf) goal changed from start to stop Jan 6 12:44:12 mongo4 init: mongoconf (mongoconf) state changed from running to stopping man 5 init shows that you can use instance names to differentiate the two. I tried using 'instance mongoconf' in the on upstart script and 'instance mongodb' in the other one, and it still fails. I can manually start the other process, so there is definitely no conflicts on port numbers or directories. Any ideas on what to try or how to get output on why it is 'terminated with status 1'? Thanx

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• Linux SFTP and many local user accounts, limits with mount --bind?

  - by user123428

  I am in the process of building a solution to handle many developers (possibly hundreds) to work on their files via sftp, each one Jailed in their home directory. For our particular needs, we have a samba mount point that contains all of the users home directories. I have started developing the following solution and hit some walls: - I have configured a Ubuntu Lucid Server as sftp server. - In order to jail the user in their home directory (without allowing them the browse a directory up and seeing all the other users folders) I am using mount --bind and not a symbolic link (also some ftp clients don't really work with sym links). - The user accounts are local unix user accounts on the sftp server (not using a directory service or anything) that have an empty home folder created on the local machine, then I use mount --bind to bind the empty folder to the actual users home directory on the samba share. With this solution I am hitting a couple of problems, in the case of a server reboot, all the mount --binds are lost because they are not written in fstab. Then I have read somewhere that the maximum amount of entries in fstab are 400 (which does not really help us). I have thought of a solution of writing something that stores the mounts in a text file as a backup and on server reboot, run the script that re mounts. I am just really unsure about this whole process and was wondering if anyone has any insight on possibly a better solution for SFTP? (not FTP)

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• VirtualBox 3.2 is released! A Red Letter Day?

  - by Fat Bloke

  Big news today! A new release of VirtualBox packed full of innovation and improvements. Over the next few weeks we'll take a closer look at some of these new features in a lot more depth, but today we'll whet your appetite with the headline descriptions. To start with, we should point out that this is the first Oracle-branded version which makes today a real Red-letter day ;-)  Oracle VM VirtualBox 3.2 Version 3.2 moves VirtualBox forward in 3 main areas ( handily, all beginning with "P" ) : performance, power and supported guest operating system platforms.  Let's take a look: Performance New Latest Intel hardware support - Harnessing the latest in chip-level support for virtualization, VirtualBox 3.2 supports new Intel Core i5 and i7 processor and Intel Xeon processor 5600 Series support for Unrestricted Guest Execution bringing faster boot times for everything from Windows to Solaris guests; New Large Page support - Reducing the size and overhead of key system resources, Large Page support delivers increased performance by enabling faster lookups and shorter table creation times. New In-hypervisor Networking - Significant optimization of the networking subsystem has reduced context switching between guests and host, increasing network throughput by up to 25%. New New Storage I/O subsystem - VirtualBox 3.2 offers a completely re-worked virtual disk subsystem which utilizes asynchronous I/O to achieve high-performance whilst maintaining high data integrity; New Remote Video Acceleration - The unique built-in VirtualBox Remote Display Protocol (VRDP), which is primarily used in virtual desktop infrastructure deployments, has been enhanced to deliver video acceleration. This delivers a rich user experience coupled with reduced computational expense, which is vital when servers are running hundreds of virtual machines; Power New Page Fusion - Traditional Page Sharing techniques have suffered from long and expensive cache construction as pages are scrutinized as candidates for de-duplication. Taking a smarter approach, VirtualBox Page Fusion uses intelligence in the guest virtual machine to determine much more rapidly and accurately those pages which can be eliminated thereby increasing the capacity or vm density of the system; New Memory Ballooning- Ballooning provides another method to increase vm density by allowing the memory of one guest to be recouped and made available to others; New Multiple Virtual Monitors - VirtualBox 3.2 now supports multi-headed virtual machines with up to 8 virtual monitors attached to a guest. Each virtual monitor can be a host window, or be mapped to the hosts physical monitors; New Hot-plug CPU's - Modern operating systems such Windows Server 2008 x64 Data Center Edition or the latest Linux server platforms allow CPUs to be dynamically inserted into a system to provide incremental computing power while the system is running. Version 3.2 introduces support for Hot-plug vCPUs, allowing VirtualBox virtual machines to be given more power, with zero-downtime of the guest; New Virtual SAS Controller - VirtualBox 3.2 now offers a virtual SAS controller, enabling it to run the most demanding of high-end guests; New Online Snapshot Merging - Snapshots are powerful but can eat up disk space and need to be pruned from time to time. Historically, machines have needed to be turned off to delete or merge snapshots but with VirtualBox 3.2 this operation can be done whilst the machines are running. This allows sophisticated system management with minimal interruption of operations; New OVF Enhancements - VirtualBox has supported the OVF standard for virtual machine portability for some time. Now with 3.2, VirtualBox specific configuration data is also stored in the standard allowing richer virtual machine definitions without compromising portability; New Guest Automation - The Guest Automation APIs allow host-based logic to drive operations in the guest; Platforms New USB Keyboard and Mouse - Support more guests that require USB input devices; New Oracle Enterprise Linux 5.5 - Support for the latest version of Oracle's flagship Linux platform; New Ubuntu 10.04 ("Lucid Lynx") - Support for both the desktop and server version of the popular Ubuntu Linux distribution; And as a man once said, "just one more thing" ... New Mac OS X (experimental) - On Apple hardware only, support for creating virtual machines run Mac OS X. All in all this is a pretty powerful release packed full of innovation and speedups. So what are you waiting for?  -FB 

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• nginx with passenger

  - by Luc

  Hello, I'm trying to move from Apache + Passenger to Nginx + passenger on my Ubuntu Lucid Lynx box. When I install passenger, sudo gem install passenger and cd /var/lib/gems/1.9.1/gems/passenger-2.2.14/bin sudo ./passenger-install-nginx-module everything is fine (no error). Nginx is downloaded / compiled and installed at the same time (when selecting the first option during passenger installation). By default it is installed in /opt/nginx. I end up with the configuration file /opt/nginx/conf/nginx.conf (this conf file was automatically updated with passenger config). The thing I do not understand is that I also have the configuration file /etc/nginx/nginx.conf... what is the purpose of this one when it seems that the conf file in /opt/... is the main one ? When I run /etc/init.d/nginx start, it starts correclty saying that /etc/nginx/nginx.conf is ok... Does it mean that it does not check the other conf file ? I have updated /etc/init.d/nginx script and add /opt/nginx/sbin at the beginning of the PATH and it seems the correct conf file is taken into account. It seems like I have 2 nginx installations where I only relied on passenger to install it... Thanks a lot for your help, I am kind of lost here :) Luc

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• tomcat wont start up on linux machine

  - by David

  hi, im new to linux but after spending the day i have got linux running. installed java and tomcat. my goal is host my app with this linux box i've just set up. i know it all works fine from my windows based machine but it is my laptop so i'm planning this as my dedicated server. following many many forums i've now got tomcat 7 installed. however i cannot get it to start. changing to the tomcat directory and "./startup.sh" i get output Using CATALINA_BASE: /usr/local/tomcat Using CATALINA_HOME: /usr/local.tomcat Using CATALINA_TMPDIR: /usr/local/tomcat/temp Using JRE_HOME: usr/lib/jvm/java-6-sun/ Using CLASSPATH: /usr/local/tomcat/bin/bootstrap.jar:/usr/local.tomcat/bin/c\tomcat-juli.jar thats the end of theoutput. however localhost:8080 is not up. and in the tomcat log file is the error "eval: 1: usr/lib/jvm/java-6-sun//bin/java: not found" hopfully there is some expert here who can help me with this problem. please note that im a novice when it comes to linux. thankyou oh and my version of linux is Ubuntu 10.04 LTS - the Lucid Lynx

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• Cannot install passenger with Nginx

  - by Luc

  Hello, I have a rack application that I want to migrate from Ruby 1.8.7 + Apache + passenger to Ruby 1.9.1 + Nginx + passenger. I have made up the following script for a quick install all in one, and it raises an error... Here is the installation script: (basic one with all the steps I need to install everything on a Ubuntu 10.04 Lucid Lynx fresh box) Nginx sources cd /tmp wget http://nginx.org/download/nginx-0.7.66.tar.gz tar xzf nginx-0.7.66.tar.gz cd nginx-0.7.66 openssl required for SSL/TLS sudo apt-get install openssl sudo apt-get install libssl-dev Compilation stuff sudo apt-get zlib1g-dev Ruby interpreter 1.9.1 sudo apt-get install ruby1.9.1 ruby1.9.1-dev rubygems1.9.1 irb1.9.1 ri1.9.1 rdoc1.9.1 build-essential nginx libopenssl-ruby1.9.1 Make sure default ruby uses version 1.9.1 sudo update-alternatives --install /usr/bin/ruby ruby /usr/bin/ruby1.9.1 400 --slave /usr/share/man/man1/ruby.1.gz ruby.1.gz /usr/share/man/man1/ruby1.9.1.1.gz --slave /usr/bin/ri ri /usr/bin/ri1.9.1 --slave /usr/bin/irb irb /usr/bin/irb1.9.1 --slave /usr/bin/rdoc rdoc /usr/bin/rdoc1.9.1 sudo update-alternatives --config ruby Passenger (rake-0.8.7, fastthread-1.0.7, rack-1.1.0, passenger-2.2.14) sudo gem install passenger Activate Passenger in nginx, select option 2 to use nginx sources donwloaded above cd /var/lib/gems/1.9.1/gems/passenger-2.2.14/bin sudo ./passenger-install-nginx-module And this is the error message I got: /var/lib/gems/1.9.1/gems/passenger-2.2.14/ext/nginx/ContentHandler.c gcc -c -pipe -O -W -Wall -Wpointer-arith -Wno-unused-parameter -Wunused-function -Wunused-variable -Wunused-value -Werror -g -I src/core -I src/event -I src/event/modules -I src/os/unix -I /tmp/pcre-8.00 -I objs -I src/http -I src/http/modules -I src/mail \ -o objs/addon/nginx/StaticContentHandler.o \ /var/lib/gems/1.9.1/gems/passenger-2.2.14/ext/nginx/StaticContentHandler.c /var/lib/gems/1.9.1/gems/passenger-2.2.14/ext/nginx/StaticContentHandler.c: In function ‘passenger_static_content_handler’: /var/lib/gems/1.9.1/gems/passenger-2.2.14/ext/nginx/StaticContentHandler.c:71: error: ‘ngx_http_request_t’ has no member named ‘zero_in_uri’ make[1]: *** [objs/addon/nginx/StaticContentHandler.o] Error 1 make[1]: Leaving directory `/tmp/nginx-0.7.66' make: *** [build] Error 2 -------------------------------------------- It looks like something went wrong Please read our Users guide for troubleshooting tips: /var/lib/gems/1.9.1/gems/passenger-2.2.14/doc/Users guide Nginx.html I do not understand the reason of this error. Is this a compatibility problem ? Hope you have any clues :) Thanks a lot, Luc

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