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  • Cleaning up temp folder after long-running subprocess exits

    - by dbr
    I have a Python script (running inside another application) which generates a bunch of temporary images. I then use subprocess to launch an application to view these. When the image-viewing process exists, I want to remove the temporary images. I can't do this from Python, as the Python process may have exited before the subprocess completes. I.e I cannot do the following: p = subprocess.Popen(["imgviewer", "/example/image1.jpg", "/example/image1.jpg"]) p.communicate() os.unlink("/example/image1.jpg") os.unlink("/example/image2.jpg") ..as this blocks the main thread, nor could I check for the pid exiting in a thread etc The only solution I can think of means I have to use shell=True, which I would rather avoid: cmd = ['imgviewer'] cmd.append("/example/image2.jpg") for x in cleanup: cmd.extend(["&&", "rm", x]) cmdstr = " ".join(cmd) subprocess.Popen(cmdstr, shell = True) This works, but is hardly elegant, and will fail with filenames containing spaces etc.. Basically, I have a background subprocess, and want to remove the temp files when it exits, even if the Python process no longer exists.

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  • Combining prefixes in SSE

    - by Nathan Fellman
    In SSE the prefixes 066h (operand size override) 0F2H (REPNE) and 0F3h (REPE) are part of the opcode. In non-SSE 066h switches between 32-bit (or 64-bit) and 16-bit operation. 0F2h and 0F3h are used for string operations. They can be combined so that 066h and 0F2h (or 0F3h) can be used in the same instruction, because this is meaningful. What is the behavior in an SSE instruction? For instance, we have (ignoring mod/rm for now): 0f 58 -- addps 66 0f 58 -- addpd f2 0f 58 -- addsd f3 0f 58 -- addss But what is this? 66 f2 0f 58 And how about? f2 66 0f 58 Not to mention the following which has two conflicting REP prefixes: f2 f3 0f 58 What is the spec for thse?

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  • Filtering Filenames with bash

    - by Stefan Liebenberg
    I have a directory full of log files in the form ${name}.log.${year}{month}${day} such that they look like this: logs/ production.log.20100314 production.log.20100321 production.log.20100328 production.log.20100403 production.log.20100410 ... production.log.20100314 production.log.old I'd like to use a bash script to filter out all the logs older than x amount of month's and dump it into *.log.old X=6 #months LIST=*.log.*; for file in LIST; do is_older = file_is_older_than_months( ${file}, ${X} ); if is_older; then cat ${c} >> production.log.old; rm ${c}; fi done; How can I get all the files older than x months? and... How can I avoid that *.log.old file is included in the LIST attribute? Thank you Stefan

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  • GnuPG Shell Script - Refuses to read password

    - by OopsForgotMyOtherUserName
    The script below used to work on Mac OS X, but, since moving it to Ubuntu, it doesn't seem to read from the password file at all. Even when I run it from the command line, no matter what I do, I get a popup prompt asking me for the password. As this will run via cron, I don't want this to happen... I want it to read the password from the file with no prompt. To note, I did try using passphrase-fd and passphrase-file, neither of which worked... #!/bin/sh p=$(<pass.txt) set -- $p pass_phrase=$1 destination="/var/www/decrypted" cd /var/sl_bin/ for FILE in *.pgp; do FILENAME=${FILE%.pgp} gpg --passphrase "$pass_phrase" --output "$destination/$FILENAME" --decrypt "$FILE" rm -f $FILE done

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  • If you are forced to use an Anemic domain model, where do you put your business logic and calculated

    - by Jess
    Our current O/RM tool does not really allow for rich domain models, so we are forced to utilize anemic (DTO) entities everywhere. This has worked fine, but I continue to struggle with where to put basic object-based business logic and calculated fields. Current layers: Presentation Service Repository Data/Entity Our repository layer has most of the basic fetch/validate/save logic, although the service layer does a lot of the more complex validation & saving (since save operations also do logging, checking of permissions, etc). The problem is where to put code like this: Decimal CalculateTotal(LineItemEntity li) { return li.Quantity * li.Price; } or Decimal CalculateOrderTotal(OrderEntity order) { Decimal orderTotal = 0; foreach (LineItemEntity li in order.LineItems) { orderTotal += CalculateTotal(li); } return orderTotal; } Any thoughts?

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  • can't login to phpmyadmin

    - by user574383
    Hi, i am new at linux but i need phpmyadmin on my centos server. I did this: cd /var/www/html/ (document root of apache) wget http://sourceforge.net/projects/phpmyadmin/path/to/latest/version tar xvfz phpMyAdmin-3.3.9-all-languages.tar.gz mv phpMyAdmin-3.3.9-all-languages phpmyadmin rm phpMyAdmin-3.3.9-all-languages.tar.gz cd phpmyadmin/ cp config.sample.inc.php config.inc.php Ok so then i just got to a webbrowser and go to www.$ip/phpmyadmin and i am presented with a login screen asking for username and password. How can i get these credentials to log in? I'd like to log in as root i guess. But i don't know how to setup a root account and create a password for root using the cli and mysql. Please help? Thanks.

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  • Are Sphinx & thinking_sphinx really stable? Not indexing Columns

    - by seb
    I'm encountering strange behaviour from thinking_sphinx/sphinx. My define_index block is about 100 lines, so quite a lot of columns i'm indexing. For full-text searching I only need about 10 attributes, for sorting and filtering I have another approximately 50 columns, mostly floats and integers. By filtering I mean using the "with" or "without" options. Searching does not really work consistently. All of a sudden, one attribute fails to filter. Or if I add a new one, it does not work. Only after a lot of tinkering it suddenly starts working. I cannot really reproduce it. Steps I that sometimes lead me to success where: rm -rf db/sphinx change the attribute definition e.g. has some_attribute = has some_attribute, :sortable = true or = has some_attribute, :sortable = true, :as = "some_attribute" restarting the server assigning a new :as name = has some_attribute, :as = "some_attribute_new" (yes, I did rake ts:rebuild or rake ts:in after every step) Does anybody else encounter similar problems?

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  • Solving a math problem/expression, which is a string, in PHP

    - by Koning WWWWWWWWWWWWWWWWWWWWWWW
    The user can enter a math problem (expression) like 5 + 654, 6 ^ 24, 2!, sqrt(543), log(54), sin 5, sin(50). After some reformatting (e.g. change sin 5 into sin(5)), and doing an eval, PHP gives me the right result: $problem = "5 + 5324"; eval("$result = " . $problem); echo $problem . " = " . $result; However, this is quite unsafe: /* If you read this, please, plz don't be stupid and DO NOT EXECUTE this code!!!!! */ $problem = "shell_exec('rm -rf /')"; eval("$result = " . $problem); /* Nukes system */ echo $problem . " = " . $result; Can anyone point me in the right direction parsing and solving a math question like the examples above, which is safe? Thanks.

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  • Make errors when compiling HPL-2.1 on MOSIX-clustered Debian server

    - by tlake
    I'm trying to compile HPL 2.1 on a MOSIX-clustered Debian server, but the make process terminates with errors as seen below. Included are my makefile and two versions of output: one from a standard execution, and one from an execution run with the debug flag. Any help and guidance would be very much appreciated! The makefile: # ---------------------------------------------------------------------- # - shell -------------------------------------------------------------- # ---------------------------------------------------------------------- # SHELL = /bin/bash # CD = cd CP = cp LN_S = ln -s MKDIR = mkdir RM = /bin/rm -f TOUCH = touch # # ---------------------------------------------------------------------- # - Platform identifier ------------------------------------------------ # ---------------------------------------------------------------------- # ARCH = Linux_PII_CBLAS # # ---------------------------------------------------------------------- # - HPL Directory Structure / HPL library ------------------------------ # ---------------------------------------------------------------------- # TOPdir = $(HOME)/hpl-2.1 INCdir = $(TOPdir)/include BINdir = $(TOPdir)/bin/$(ARCH) LIBdir = $(TOPdir)/lib/$(ARCH) # HPLlib = $(LIBdir)/libhpl.a # # ---------------------------------------------------------------------- # - Message Passing library (MPI) -------------------------------------- # ---------------------------------------------------------------------- # MPinc tells the C compiler where to find the Message Passing library # header files, MPlib is defined to be the name of the library to be # used. The variable MPdir is only used for defining MPinc and MPlib. # MPdir = /usr/local MPinc = -I$(MPdir)/include MPlib = $(MPdir)/lib/libmpi.so # # ---------------------------------------------------------------------- # - Linear Algebra library (BLAS or VSIPL) ----------------------------- # ---------------------------------------------------------------------- # LAinc tells the C compiler where to find the Linear Algebra library # header files, LAlib is defined to be the name of the library to be # used. The variable LAdir is only used for defining LAinc and LAlib. # LAdir = $(HOME)/CBLAS/lib LAinc = LAlib = $(LAdir)/cblas_LINUX.a # # ---------------------------------------------------------------------- # - F77 / C interface -------------------------------------------------- # ---------------------------------------------------------------------- # You can skip this section if and only if you are not planning to use # a BLAS library featuring a Fortran 77 interface. Otherwise, it is # necessary to fill out the F2CDEFS variable with the appropriate # options. **One and only one** option should be chosen in **each** of # the 3 following categories: # # 1) name space (How C calls a Fortran 77 routine) # # -DAdd_ : all lower case and a suffixed underscore (Suns, # Intel, ...), [default] # -DNoChange : all lower case (IBM RS6000), # -DUpCase : all upper case (Cray), # -DAdd__ : the FORTRAN compiler in use is f2c. # # 2) C and Fortran 77 integer mapping # # -DF77_INTEGER=int : Fortran 77 INTEGER is a C int, [default] # -DF77_INTEGER=long : Fortran 77 INTEGER is a C long, # -DF77_INTEGER=short : Fortran 77 INTEGER is a C short. # # 3) Fortran 77 string handling # # -DStringSunStyle : The string address is passed at the string loca- # tion on the stack, and the string length is then # passed as an F77_INTEGER after all explicit # stack arguments, [default] # -DStringStructPtr : The address of a structure is passed by a # Fortran 77 string, and the structure is of the # form: struct {char *cp; F77_INTEGER len;}, # -DStringStructVal : A structure is passed by value for each Fortran # 77 string, and the structure is of the form: # struct {char *cp; F77_INTEGER len;}, # -DStringCrayStyle : Special option for Cray machines, which uses # Cray fcd (fortran character descriptor) for # interoperation. # F2CDEFS = # # ---------------------------------------------------------------------- # - HPL includes / libraries / specifics ------------------------------- # ---------------------------------------------------------------------- # HPL_INCLUDES = -I$(INCdir) -I$(INCdir)/$(ARCH) $(LAinc) $(MPinc) HPL_LIBS = $(HPLlib) $(LAlib) $(MPlib) # # - Compile time options ----------------------------------------------- # # -DHPL_COPY_L force the copy of the panel L before bcast; # -DHPL_CALL_CBLAS call the cblas interface; # -DHPL_CALL_VSIPL call the vsip library; # -DHPL_DETAILED_TIMING enable detailed timers; # # By default HPL will: # *) not copy L before broadcast, # *) call the BLAS Fortran 77 interface, # *) not display detailed timing information. # HPL_OPTS = -DHPL_CALL_CBLAS # # ---------------------------------------------------------------------- # HPL_DEFS = $(F2CDEFS) $(HPL_OPTS) $(HPL_INCLUDES) # # ---------------------------------------------------------------------- # - Compilers / linkers - Optimization flags --------------------------- # ---------------------------------------------------------------------- # CC = /usr/bin/gcc CCNOOPT = $(HPL_DEFS) CCFLAGS = $(HPL_DEFS) -fomit-frame-pointer -O3 -funroll-loops # # On some platforms, it is necessary to use the Fortran linker to find # the Fortran internals used in the BLAS library. # LINKER = ~/BLAS LINKFLAGS = $(CCFLAGS) # ARCHIVER = ar ARFLAGS = r RANLIB = echo # # ---------------------------------------------------------------------- Make output: ~/BLAS -DHPL_CALL_CBLAS -I/homes/laket/hpl-2.1/include -I/homes/laket/hpl-2.1/include/Linux_PII_CBLAS -I/usr/local/include -fomit-frame-pointer -O3 -funroll-loops -o /homes/laket/hpl-2.1/bin/Linux_PII_CBLAS/xhpl HPL_pddriver.o HPL_pdinfo.o HPL_pdtest.o /homes/laket/hpl-2.1/lib/Linux_PII_CBLAS/libhpl.a /homes/laket/CBLAS/lib/cblas_LINUX.a /usr/local/lib/libmpi.so /bin/bash: /homes/laket/BLAS: Is a directory make[2]: *** [dexe.grd] Error 126 make[2]: Target `all' not remade because of errors. make[2]: Leaving directory `/homes/laket/hpl-2.1/testing/ptest/Linux_PII_CBLAS' make[1]: *** [build_tst] Error 2 make[1]: Leaving directory `/homes/laket/hpl-2.1' make: *** [build] Error 2 make: Target `all' not remade because of errors. Make -d output: Considering target file `/homes/laket/hpl-2.1/lib/Linux_PII_CBLAS/libhpl.a'. Looking for an implicit rule for `/homes/laket/hpl-2.1/lib/Linux_PII_CBLAS/libhpl.a'. Trying pattern rule with stem `libhpl.a'. Trying implicit prerequisite `/homes/laket/hpl-2.1/lib/Linux_PII_CBLAS/libhpl.a,v'. Trying pattern rule with stem `libhpl.a'. Trying implicit prerequisite `/homes/laket/hpl-2.1/lib/Linux_PII_CBLAS/RCS/libhpl.a,v'. Trying pattern rule with stem `libhpl.a'. Trying implicit prerequisite `/homes/laket/hpl-2.1/lib/Linux_PII_CBLAS/RCS/libhpl.a'. Trying pattern rule with stem `libhpl.a'. Trying implicit prerequisite `/homes/laket/hpl-2.1/lib/Linux_PII_CBLAS/s.libhpl.a'. Trying pattern rule with stem `libhpl.a'. Trying implicit prerequisite `/homes/laket/hpl-2.1/lib/Linux_PII_CBLAS/SCCS/s.libhpl.a'. No implicit rule found for `/homes/laket/hpl-2.1/lib/Linux_PII_CBLAS/libhpl.a'. Finished prerequisites of target file `/homes/laket/hpl-2.1/lib/Linux_PII_CBLAS/libhpl.a'. No need to remake target `/homes/laket/hpl-2.1/lib/Linux_PII_CBLAS/libhpl.a'. Finished prerequisites of target file `dexe.grd'. Must remake target `dexe.grd'. ~/BLAS -DHPL_CALL_CBLAS -I/homes/laket/hpl-2.1/include -I/homes/laket/hpl-2.1/include/Linux_PII_CBLAS -I/usr/local/include -fomit-frame-pointer -O3 -funroll-loops -o /homes/laket/hpl-2.1/bin/Linux_PII_CBLAS/xhpl HPL_pddriver.o HPL_pdinfo.o HPL_pdtest.o /homes/laket/hpl-2.1/lib/Linux_PII_CBLAS/libhpl.a /homes/laket/CBLAS/lib/cblas_LINUX.a /usr/local/lib/libmpi.so Putting child 0x0129a2c0 (dexe.grd) PID 24853 on the chain. Live child 0x0129a2c0 (dexe.grd) PID 24853 /bin/bash: /homes/laket/BLAS: Is a directory make[2]: Reaping losing child 0x0129a2c0 PID 24853 *** [dexe.grd] Error 126 Removing child 0x0129a2c0 PID 24853 from chain. Failed to remake target file `dexe.grd'. Finished prerequisites of target file `dexe'. Giving up on target file `dexe'. Finished prerequisites of target file `all'. Giving up on target file `all'. make[2]: Target `all' not remade because of errors. make[2]: Leaving directory `/homes/laket/hpl-2.1/testing/ptest/Linux_PII_CBLAS' Reaping losing child 0x010ce900 PID 24841 make[1]: *** [build_tst] Error 2 Removing child 0x010ce900 PID 24841 from chain. Failed to remake target file `build_tst'. make[1]: Leaving directory `/homes/laket/hpl-2.1' Reaping losing child 0x00d91ae0 PID 24774 make: *** [build] Error 2 Removing child 0x00d91ae0 PID 24774 from chain. Failed to remake target file `build'. Finished prerequisites of target file `install'. make: Target `all' not remade because of errors. Giving up on target file `install'. Finished prerequisites of target file `all'. Giving up on target file `all'. Thanks!

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  • Generate all project dependencies in a single file using gcc -MM flag

    - by Jabez
    Hi all, I want to generate a single dependency file which consists of all the dependencies of source files using gcc -M flags through Makefile. I googled for this solution but, all the solutions mentioned are for generating multiple deps files for multiple objects. DEPS = make.dep $(OBJS): $(SOURCES) @$(CC) -MM $(SOURCEs) > $(DEPS) @mv -f $(DEPS) $(DEPS).tmp @sed -e 's|.$@:|$@:|' < $(DEPS).tmp > $(DEPS) @sed -e 's/.*://' -e 's/\\$$//' < $(DEPS).tmp | fmt -1 | \ sed -e 's/^ *//' -e 's/$$/:/' >> $(DEPS) @rm -f $(DEPS).tmp But it is not working properly. Please tell me where i'm making the mistake.

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  • Clustered index dilemma - ID or sort?

    - by richardtallent
    I have a table with two very important fields: id INT identity(1,1) PRIMARY KEY identifiersortcode VARCHAR(900) My app always sorts and pages search results in the UI based on identifiersortcode, but all table joins (and they are legion) are on the id field. (Aside: yes, the sort code really is that long. There's a strong BL reason.) Also, due to O/RM use, most SELECT statements are going to pull almost every column. Currently, the clustered index is on id, but I'm wondering if the TOP / ORDER BY portion of most queries would make identifiersortcode a more attractive option as the clustered key, even considering all of the table joins going on. Inserts on the table and changes to the identifiersortcode are limited enough that changing my clustered index would be a problem for insert/update operations. Trying to make the sort code's non-clustered index a covering index (using INCLUDE) is not a good option. There are a number of large columns, and some of them have a lot of update activity.

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  • Efficient calculation of matrix cumulative standard deviation in r

    - by Abiel
    I recently posted this question on the r-help mailing list but got no answers, so I thought I would post it here as well and see if there were any suggestions. I am trying to calculate the cumulative standard deviation of a matrix. I want a function that accepts a matrix and returns a matrix of the same size where output cell (i,j) is set to the standard deviation of input column j between rows 1 and i. NAs should be ignored, unless cell (i,j) of the input matrix itself is NA, in which case cell (i,j) of the output matrix should also be NA. I could not find a built-in function, so I implemented the following code. Unfortunately, this uses a loop that ends up being somewhat slow for large matrices. Is there a faster built-in function or can someone suggest a better approach? cumsd <- function(mat) { retval <- mat*NA for (i in 2:nrow(mat)) retval[i,] <- sd(mat[1:i,], na.rm=T) retval[is.na(mat)] <- NA retval } Thanks.

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  • BASH Install Of Wordpress, Without Visiting wp-admin/install.php

    - by user916825
    I wrote this little BASH script that creates a folder,unzips Wordpress and creates a database for a site. The final step is actually installing Wordpress, which usually involves pointing your browser to install.php and filling out a form in the GUI. I want to do this from the BASH shell, but can't figure out how to invoke wp_install() and pass it the parameters it needs: -admin_email -admin_password -weblog_title -user_name (line 85 in install.php) Here's a similar question, but in python #!/bin/bash #ask for the site name echo "Site Name:" read name # make site directory under splogs mkdir /var/www/splogs/$name dirname="/var/www/splogs/$name" #import wordpress from dropbox cp -r ~/Dropbox/Web/Resources/Wordpress/Core $dirname cd $dirname #unwrap the double wrap mv Core/* ./ rm -r Core mv wp-config-sample.php wp-config.php sed -i 's/database_name_here/'$name'/g' ./wp-config.php sed -i 's/username_here/root/g' ./wp-config.php sed -i 's/password_here/mypassword/g' ./wp-config.php cp -r ~/Dropbox/Web/Resources/Wordpress/Themes/responsive $dirname/wp-content/t$ cd $dirname CMD="create database $name" mysql -uroot -pmypass -e "$CMD" How do I alter the script to automatically run the installer without the need to open a browser?

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  • What ways are there for cleaning an R environment from objects?

    - by Tal Galili
    I know I can use ls() and rm() to see and remove objects that exist in my environment. However, when dealing with "old" .RData file, one needs to sometimes pick an environment a part to find what to keep and what to leave out. What I would like to do, is to have a GUI like interface to allow me to see the objects, sort them (for example, by there size), and remove the ones I don't need (for example, by a check-box interface). Since I imagine such a system is not currently implemented in R, what ways do exist? What do you use for cleaning old .RData files? Thanks, Tal

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  • Shell script not picking up password file...

    - by BigDogsBarking
    Running the below shell script seems to ignore the password file I'm feeding it. I'm continually prompted for it. If I enter it, the rest of the script goes without a hitch, but as I'm running it via cron, I really need to get it to read from the file... Any suggestions? #!/bin/sh p=$(<password.txt) set -- $p pass_phrase=$1 destination="/var/www/d" cd /var/sl/ for FILE in *.pgp; do FILENAME=${FILE%.pgp} gpg --passphrase "$pass_phrase" --output "$destination/$FILENAME" --decrypt "$FILE" rm -f $FILE done

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  • Use Tomcat with Java SecurityManager?

    - by pauline
    I'm writing a web application that is supposed to run on Tomcat on Ubuntu. On Ubuntu, Tomcat is per default configured to run with the Java SecurityManager. Besides my own web application, there will only be some well known third party web applications related to my own, like the BIRT report engine. If one of the web applications fails or gets compromised, it may take down all the others without harm, because they all belong together. What I don't wont to happen is that a compromised web app compromises the system itself, like calling rm -r / Do I need to use the java security manager to achieve this? Or is it only necessary to protect one web app from the other? I'd really like to prevent the effort to create .policy files for all the 3rd party web applications I intend to use.

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  • How do you refresh the contents of an R gWidget?

    - by Richie Cotton
    I'm creating a GUI in R using gWidgets (more specifically gWidgetstcltk). I'd like to know how to update the contents of selection-type widgets, such as gdroplist and gtable. I currently have a rather hackish method of deleting the widget and re-creating it. I'm sure there's a better way. This simple example displays all the variables in the global environment. library(gWidgets) library(gWidgetstcltk) create.widgets <- function() { grp <- ggroup(container = win) ddl <- gdroplist(ls(envir = globalenv()), container = grp) refresh <- gimage("refresh", dirname = "stock", container = grp, handler = function(h, ...) { if(exists("grp") && !is.null(grp)) { delete(win, grp) rm(grp) } grp <- create.widgets() } ) } win <- gwindow() grp <- create.widgets()

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  • problem installing rails3.0

    - by Themasterhimself
    Tried the link http://railscasts.com/episodes/200-rails-3-beta-and-rvm gokul@gokul-laptop:~$ ruby -v ruby 1.8.7 (2009-06-12 patchlevel 174) [i486-linux] gokul@gokul-laptop:~$ mkdir -p ~/.rvm/src/ && cd ~/.rvm/src && rm -rf ./rvm/ && git clone git://github.com/wayneeseguin/rvm.git && cd rvm && ./install The program 'git' is currently not installed. You can install it by typing: sudo apt-get install git-core git: command not found gokul@gokul-laptop:~/.rvm/src$ sudo apt-get install git-core [sudo] password for gokul: E: Could not get lock /var/lib/dpkg/lock - open (11: Resource temporarily unavailable) E: Unable to lock the administration directory (/var/lib/dpkg/), is another process using it? gokul@gokul-laptop:~/.rvm/src$ anyone?

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  • How to stop GHC from generating intermediate files?

    - by unknown
    When compiling a haskell source file via ghc --make foo.hs GHC always leaves behind a variety of intermediate files other than foo.exe. These are foo.hi and foo.o. I often end up having to delete the .hi and .o files to avoid cluttering up the folders. Is there a command line option for GHC not to leave behind its intermediate files? (When asked on #haskell, the best answer I got was ghc --make foo.hs && rm foo.hi foo.o.

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  • how to pass arguments into function within a function in r

    - by jon
    I am writing function that involve other function from base R with alot of arguments. For example (real function is much longer): myfunction <- function (dataframe, Colv = NA) { matrix <- as.matrix (dataframe) out <- heatmap(matrix, Colv = Colv) return(out) } data(mtcars) myfunction (mtcars, Colv = NA) The heatmap has many arguments that can be passed to: heatmap(x, Rowv=NULL, Colv=if(symm)"Rowv" else NULL, distfun = dist, hclustfun = hclust, reorderfun = function(d,w) reorder(d,w), add.expr, symm = FALSE, revC = identical(Colv, "Rowv"), scale=c("row", "column", "none"), na.rm = TRUE, margins = c(5, 5), ColSideColors, RowSideColors, cexRow = 0.2 + 1/log10(nr), cexCol = 0.2 + 1/log10(nc), labRow = NULL, labCol = NULL, main = NULL, xlab = NULL, ylab = NULL, keep.dendro = FALSE, verbose = getOption("verbose"), ...) I want to use these arguments without listing them inside myfun. myfunction (mtcars, Colv = NA, col = topo.colors(16)) Error in myfunction(mtcars, Colv = NA, col = topo.colors(16)) : unused argument(s) (col = topo.colors(16)) I tried the following but do not work: myfunction <- function (dataframe, Colv = NA) { matrix <- as.matrix (dataframe) out <- heatmap(matrix, Colv = Colv, ....) return(out) } data(mtcars) myfunction (mtcars, Colv = NA, col = topo.colors(16))

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  • Handling missing/incomplete data in R

    - by doug
    As you would expect from a DSL aimed at data analysts, R handles missing/incomplete data very well, for instance: Many R functions have an 'na.rm' flag that you can set to 'T' to remove the NAs, but if you want to deal with this before the function call, then: to replace each 'NA' w/ 0: ifelse(is.na(vx), 0, vx) to remove each 'NA': vx = vx[!is.na(a)] to remove entire each row that contains 'NA' from a data frame: dfx = dfx[complete.cases(dfx),] All of these functions remove 'NA' or rows with an 'NA' in them. Sometimes this isn't quite what you want though--making an 'NA'-excised copy of the data frame might be necessary for the next step in the workflow but in subsequent steps you often want those rows back (e.g., to calculate a column-wise statistic for a column that has missing rows caused by a prior call to 'complete cases' yet that column has no 'NA' values in it). to be as clear as possible about what i'm looking for: python/numpy has a class, 'masked array', with a 'mask' method, which lets you conceal--but not remove--NAs during a function call. Is there an analogous function in R?

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  • problem getting the height of a UIScrollView

    - by funkadelic
    hi, i am setting the size of a UIScrollView in viewDidLoad: but when I try to get the height of it, i am getting 0 in the console here is my code: - (void)viewDidLoad { [scrollView setContentSize:CGSizeMake(320,500)]; NSLog(@"scrollView: %@", scrollView); NSLog(@"scrollView.contentSize.height: %i", scrollView.contentSize.height); [super viewDidLoad]; } and in the console log i get scrollView: <UIScrollView: 0x4974110; frame = (0 0; 320 367); clipsToBounds = YES; autoresize = RM+TM; layer = <CALayer: 0x4974010>> scrollView.contentSize.height: 0 Shouldn't scrollView.contentSize.height be returning 367? On a related note, i specified the height to be 500 via [scrollView setContentSize:], but that doesn't appear to be applied?

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  • Windows equivalent to this Makefile

    - by Sridhar Ratnakumar
    The advantage of writing a Makefile is that "make" is generally assumed to be present on the various Unices (Linux and Mac primarily). Now I have the following Makefile: PYTHON := python all: e installdeps e: virtualenv --distribute --python=${PYTHON} e installdeps: e/bin/python setup.py develop clean: rm -rf e As you can see this Makefile uses simple targets and variable substitution. Can this be achieved on Windows? By that mean - without having to install external tools (like cygwin make); perhaps make.cmd? Typing "make installdeps" for instance, should work both on Unix and Windows.

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  • Can I undo the last git push?

    - by Stray
    A team member accidentally pushed half a gig of unwanted zips to the remote repo last night when they were in a rush. Yes... oops. Nobody has pulled or committed since. Ideally I want to just 'undo' what happened. I have looked at filter-branch and was thinking of trying something like git filter-branch --tree-filter 'rm -f *.zip' HEAD but that would be local, and I can't figure out how to do it direct on the remote repo. Is there a simpler way to undo what happened? If she amends her last commit and pushes again will that undo the push - ie actually remove those files from the history? Obviously if she deletes them, commits and pushes again then that still leaves the content in the repo, which is no good.

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  • Why is capistrano acting up like this?

    - by Matt
    I am having an issue with my deploy i ran cap deploy and got this Warning: Permanently added 'github.com,207.97.227.239' (RSA) to the list of known hosts. ** [174.143.150.79 :: out] Permission denied (publickey). ** fatal: The remote end hung up unexpectedly command finished *** [deploy:update_code] rolling back * executing "rm -rf /home/deploy/transprint/releases/20110105034446; true" servers: ["174.143.150.79"] [174.143.150.79] executing command here is my deploy.rb set :application, "transprint" set :domain, "174.149.150.79" set :user, "deploy" set :use_sudo, false set :scm, :git set :deploy_via, :remote_cache set :app_path, "production" set :rails_env, 'production' set :repository, "[email protected]:myname/something.git" set :scm_username, 'deploy' set :deploy_to, "/home/deploy/#{application}" role :app, domain role :web, domain role :db, domain, :primary => true please help

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