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  • AWK :Extract columns from file: Rows have variable columns

    - by pulikot1
    I have a text file in the following format. Each row has variable number of columns. File: gi|269201691|ref|YP_003280960.1| chromosomal replication initiation protein gi|57651109|ref|YP_184912.1| chromosomal replication initiation protein % 1 0.0 2296 100.0 gi|269201692|ref|YP_003280961.1| DNA polymerase III subunit beta gi|57651110|ref|YP_184913.1| DNA polymerase III subunit beta % 1 0.0 1964 100.0 The resulting file should look like the following: gi|269201691|ref|YP_003280960.1| gi|57651109|ref|YP_184912.1| % 1 0.0 2296 100.0 gi|269201694|ref|YP_003280963.1| gi|57651112|ref|YP_184915.1| % 1 0.0 1767 100.0 The code below helps find columns in each row with the pattern 'ref'. awk '{for (i=1;i<=NF;i++) if ($i ~ /ref/) print $i }' Any ideas on how to do the same?

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  • manage.py not updating database name

    - by ricree
    I have a Django application, and I recently changed the name of the database it is supposed to use. However, manage.py doesn't seem to be using the new database. I've doublechecked the settings.py file, and I've even added a "print settings.DATABASE_NAME" to the manage.py file, and it prints out the correct name, but still connects to the old database. For example, using ./manage.py dbshell: NewDB Password for user : Welcome to psql 8.1.11, the PostgreSQL interactive terminal. OldDB=> So as far as I can see, it's completely ignoring what's in the settings file. What could be causing this?

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  • Problem with printing output using PHP library

    - by Jack
    I am using the PHP library tools on a we hosting service( with cURL enabled). I have so far tried 2 tools but I cant get the output of my code to print to the screen. http://github.com/jdp/twitterlibphp - PHP library Sample code - <?php require("twitter.lib.php"); $twitter = new Twitter("xxxx", "xxxxx"); $public_timeline = $twitter->getPublicTimeline(); echo'<pre>'; print_r( $public_timeline ); echo'</pre>'; ?> I don't get any output. What can be the problem? Do I need to install any modules or packages? Please Help

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  • Python: how to enclose strings in a list with < and >

    - by Michael Konietzny
    Hello, i would like to enclose strings inside of list into < (formatted like <%s). The current code does the following: def create_worker (general_logger, general_config): arguments = ["worker_name", "worker_module", "worker_class"] __check_arguments(arguments) def __check_arguments(arguments): if len(sys.argv) < 2 + len(arguments): print "Usage: %s delete-project %s" % (__file__," ".join(arguments)) sys.exit(10) The current output looks like this: Usage: ...\handler_scripts.py delete-project worker_name worker_module worker_class and should look like this: Usage: ...\handler_scripts.py delete-project <worker_name> <worker_module> <worker_class> Is there any short way to do this ? Greetings, Michael

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  • pb with callback in the python optparse module

    - by PierrOz
    Hi Guys, I'm playing with Python 2.6 and its optparse module. I would like to convert one of my arguments to a datetime through a callback but it fails. Here is the code: def parsedate(option, opt_str, value, parser): option.date = datetime.strptime(value, "%Y/%m/%d") def parse_options(args): parser = OptionParser(usage="%prog -l LOGFOLDER [-e]", version="%prog 1.0") parser.add_option("-d", "--date", action="callback", callback="parsedate", dest="date") global options (options, args) = parser.parse_args(args) print option.date.strftime() if __name__ == "__main__": parse_options(sys.argv[1:]) I get an error File: optparse.py in _check_callback "callback not callable". I guess I'm doing something wrong in the way I define my callback but what ? and why ? Can anyone help ?

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  • Get logged in user details in sharepoint c# webpart

    - by MalphasWats
    Hi, After much wrangling I have a development environment for building sharepoint webparts in c#. I'm completely new to SP development, so I haven't quite found the various API docs, so I'm hoping someone can help get me started. Eventually, I want to write a simple web part that allows its user to display different content depending on who the current user is. What I'd like to do first though is just build a dead simple webpart that will simply print out the current user's details - username, full name and any permissions groups that they have. Thanks

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  • Calculating a range of an exact number of values in Python

    - by Einar
    Hello, I'm building a range between two numbers (floats) and I'd like this range to be of an exact fixed length (no more, no less). range and arange work with steps, instead. To put things into pseudo Python, this is what I'd like to achieve: start_value = -7.5 end_value = 0.1 my_range = my_range_function(star_value, end_value, length=6) print my_range [-7.50,-5.98,-4.46,-2.94,-1.42,0.10] This is essentially equivalent to the R function seq which can specify a sequence of a given length. Is this possible in Python? Thanks.

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  • Number of lines in csv.DictReader

    - by Alan Harris-Reid
    Hi there, I have a csv DictReader object (using Python 3.1), but I would like to know the number of lines/rows contained in the reader before I iterate through it. Something like as follows... myreader = csv.DictReader(open('myFile.csv', newline='')) totalrows = ? rowcount = 0 for row in myreader: rowcount +=1 print("Row %d/%d" % (rowcount,totalrows)) I know I could get the total by iterating through the reader, but then I couldn't run the 'for' loop. I could iterate through a copy of the reader, but I cannot find how to copy an iterator. I could also use totalrows = len(open('myFile.csv').readlines()) but that seems an unnecessary re-opening of the file. I would rather get the count from the DictReader if possible. Any help would be appreciated. Alan

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  • CGI Perl script is printing the HTML (along with 'content-type: text/html') string to the browser ra

    - by Wikidkaka
    I have a perl CGI script that needs to send back some HTML print qq^Content-type: text/html\n\n <HTML> <HEAD> <TITLE>some title</TITLE> ... ... ... ... ^: Instead of seeing the rendered HTML in the browser, I see the entire HTML along with the tags and the 'content-type' line in plain text. Below is how things look in the browser - Content-type: text/html <HTML> <HEAD> <TITLE>some title</TITLE> </HEAD> <BODY BGCOLOR="#FFFFFF" TEXT="#000000" LINK="#000000" VLINK="#000000" ALINK="#000000" BACKGROUND="" onLoad=document.forms[0].elements[0].focus();>

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  • Using Python and Mechanize with ASP Forms

    - by tchaymore
    I'm trying to submit a form on an .asp page but Mechanize does not recognize the name of the control. The form code is: <form id="form1" name="frmSearchQuick" method="post"> .... <input type="button" name="btSearchTop" value="SEARCH" class="buttonctl" onClick="uf_Browse('dledir_search_quick.asp');" > My code is as follows: br = mechanize.Browser() br.open(BASE_URL) br.select_form(name='frmSearchQuick') resp = br.click(name='btSearchTop') I've also tried the last line as: resp = br.submit(name='btSearchTop') The error I get is: raise ControlNotFoundError("no control matching "+description) ControlNotFoundError: no control matching name 'btSearchTop', kind 'clickable' If I print br I get this: IgnoreControl(btSearchTop=) But I don't see that anywhere in the HTML. Any advice on how to submit this form?

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  • How to embedd cgi in html

    - by neversaint
    I have no problem executing a cgi file under the normal url like this: http://www.myhost.com/mydir/cgi-bin/test.cgi However when I tried to embedd it into HTML file (called index.html) like this: <HTML> <BODY> <P>Here's the output from my program: <FORM ACTION="/var/www/mydir/cgi-bin/test.cgi" METHOD=POST> </FORM> </P> </BODY> </HTML> The CGI doesn't get executed when I do: http://www.myhost.com/mydir/index.html The CGI file (test.cgi) simply looks like this: #!/usr/bin/perl -wT use CGI::Carp qw(fatalsToBrowser); print "Test cgi!\n"; What's the right way to do it?

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  • Insert new relationship data in core data

    - by michael
    Hoping someone can shed some light on what I might be doing wrong here. Trying to add an "event" to a list of events, represented by a one to many (inverse) relationship: MyEvents <--- Event This is the code: MyEvents *myEvents = (MyEvents *)[NSEntityDescription insertNewObjectForEntityForName:@"MyEvents" inManagedObjectContext:context]; NSLog(@"MYEVENTS: %@", myEvents); NSLog(@"EVENT: %@", event); [myEvents addEventObject:event]; My context is fine, and both the myEvents and event print perfectly valid information. When I try to add the event that I have (which is passed into this view controller, having been retrieved from core data previously) with this code [myEvents addEventObject:event]; It falls over with *** -[NSComparisonPredicate evaluateWithObject:]: message sent to deallocated instance MyEvents and Event are just the default generated code. MyEvents contains only the relationship to event. Thanks.

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  • Problem with stackless python, cannot write to a dict

    - by ANON
    I have simple map-reduce type algorithm, which I want to implement in python and make use of multiple cores. I read somewhere that threads using native thread module in 2.6 dont make use of multiple cores. is that true? I even implemented it using stackless python however i am getting into weird errors [Update: a quick search showed that the stack less does not allows multiple cores So are their any other alternatives?] def Propagate(start,end): print "running Thread with range: ",start,end def maxVote(nLabels): count = {} maxList = [] maxCount = 0 for nLabel in nLabels: if nLabel in count: count[nLabel] += 1 else: count[nLabel] = 1 #Check if the count is max if count[nLabel] > maxCount: maxCount = count[nLabel]; maxList = [nLabel,] elif count[nLabel]==maxCount: maxList.append(nLabel) return random.choice(maxList) for num in range(start,end): node=MapList[num] nLabels = [Label[k] for k in Adj[node]] if (nLabels!=[]): Label[node] = maxVote(nLabels) else: Label[node]=node However in above code the values assigned to Label, that is the change in dictionary are lost. Above propagate function is used as callable for MicroThreads (i.e. TaskLets)

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  • I-Phone: Trying to check an Array for an item based on a string produced

    - by MB
    Hello! I'm writing a program that will concatenate a string based on letters, and then check an array to see if that string exists. If it does, then it will print a line in IB saying so. I've got all the ins-and-outs worked out, save for the fact that the simulator keeps crashing on me! Here's the code: -(IBAction)checkWord:(id)sender { NSMutableArray *wordList = [NSMutableArray arrayWithObjects:@"BIKE", @"BUS", @"BILL", nil]; if([wordList containsObject:theWord]) { NSString *dummyText = [[NSString alloc] initWithFormat:@"%@ is a real word.", theWord]; checkText.text = dummyText; [dummyText release]; } } "theWord" is the string that is being referenced against the Array to see if it matches an item contained within it. In this case "BIKE" is 'theWord'. Thank you for your help in advance! -MB

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  • Are keys and values of %INC platform-dependent or not?

    - by codeholic
    I'd like to get the full filename of an included module. Consider this code: package MyTest; my $path = join '/', split /::/, __PACKAGE__; $path .= ".pm"; print "$INC{$path}\n"; 1; $ perl -Ipath/to/module -MMyTest -e0 path/to/module/MyTest.pm Will it work on all platforms? perlvar The hash %INC contains entries for each filename included via the do, require, or useoperators. The key is the filename you specified (with module names converted to pathnames), and the value is the location of the file found. Are these keys platform-dependent or not? Should I use File::Spec or what? At least ActivePerl on win32 uses / instead of \. Update: What about %INC values? Are they platform-dependent?

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  • excel import query error

    - by pmms
    mysql_connect("localhost","root",""); mysql_select_db("hitnrunf_db"); $result=mysql_query("select * from jos_users INTO OUTFILE 'users.csv' FIELDS ESCAPED BY '""' TERMINATED BY ',' ENCLOSED BY '"' LINES TERMINATED BY '\n' "); header("Content-type: text/plain"); header("Content-Disposition: attachment; filename=your_desired_name.xls"); header("Content-Transfer-Encoding: binary"); header("Pragma: no-cache"); header("Expires: 0"); print "$header\n$data"; in the above code in query string i.e string in side mysql_quey we are getting following error Parse error: syntax error, unexpected T_CONSTANT_ENCAPSED_STRING in C:\wamp\www\samples\mysql_excel\exel_outfile.php on line 8 in query string '\n' charter is not identifying as string thats why above error getting

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  • Perl file test operator help

    - by Aaron Moodie
    This is a really basic issue, but I'm new to perl and cannot work out what the issue is. I'm just trying to isolate the files in a directory, but the -d operator keeps treating all the folder contents as files ... @contents is my array, and when I run this: foreach $item(@contents) { if (-d $item) { next; } print"$item is a file\n"; } I keep getting both folders and files. Alternatively, if I use -f, I get nothing. edit: this is the output - file01.txt is a file folder 01 is a file folder 02 is a file Screen shot 2010-04-18 at 1.26.17 PM.png is a file I'm running this on OSX

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  • Using ed to manipulate files matched by find

    - by TheOsp
    Following the bash-hackers wiki's recommendation, I want to edit files using ed. In particular I want to do the following with ed instead of sed: find . -type f -exec sed -i -e 's/a/b/g' {} \; I see that ed doesn't have opt like sed's -e, so as far as I know, pipes and io redirections are the only way to work with it non-interactively. So, using ed from a bash script to do the same as the above sed command would look like: ed file_name <<<$'g/a/s//b/g\nw' Or echo $'g/a/s//b/g\nw' | ed file_name But as far as I know it is impossible to involve pipes or io redirections within find's -exec. Do I miss something? or is the only way to overcome this is to use loops? for file in $(find . -type f -print); do ed $file <<<$'g/a/s//b/g\nw'; done;

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  • Accessing super class function using subclass object

    - by bdhar
    I have an object for a subclass who is of it's superclass type. There is a overridden function in subclass which gets executed when called using the object. How to call the parent's function using the same object? Is there any way to achieve this? package supercall; public class Main { public static void main(String[] args) { SomeClass obj = new SubClass(); obj.go(); } } class SomeClass { SomeClass() { } public void go() { System.out.println("Someclass go"); } } class SubClass extends SomeClass { SubClass() { } @Override public void go() { System.out.println("Subclass go"); } } Consider the code above. Here it prints Subclass go . Instead I have to print Superclass go .

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  • PHP comparion doesnt work..why?

    - by user248959
    Hi, i have this code: $password_introducido = sfContext::getInstance()->getUser()->getGuardUser()->setPassword($value['password_actual']); $password_almacenado = sfContext::getInstance()->getUser()->getGuardUser()->getPassword(); var_dump("kfjsdlkjf"); var_dump($password_almacenado); var_dump($password_almacenado); if($password_introducido == $password_almacenado){ die("entrosopi"); } that prints this: string 'kfjsdlkjf' (length=9) string 'c9c40d11b29ac0f5bdef3be51ce61187582c3ae1' (length=40) string 'c9c40d11b29ac0f5bdef3be51ce61187582c3ae1' (length=40) IMHO, it should print "entrosopi", but it doesnt. Why? If i instead write if(!$password_introducido == $password_almacenado) it prints "entrosopi". Javi

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  • WinAPI C - RunAsUser from REDMON_USER and REDMON_SESSIONID

    - by scriptmaster
    I installed a PostScript printer driver and have setup REDMON (redmonnt.dll) for redirecting postscript output to my program. In my rather simple c program I capture the data from STDIN and I am able to successfully save it into a .ps file. The file looks OK. However, I want to start gsview.exe for viewing the file. If I call ShellExecute it fails in Windows 7 because of permission issues. It seems that my program is called under a different user account (LOCAL SERVICE). So I am looking for a way to run gsview.exe under a specific username (the user who initiated the print job is available to me in a variable as REDMON_USER along with the SESSIONID as well. I am stuck (and my stack is overflowing =) What are the minimum WinAPI call I need to use to launch a program given a username and a sessionid? Any code examples in C/C++, .NET would be very helpful

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  • PDO and SQL IN statements

    - by Sai
    Im using a sequel for search like this using PDOs $states = "'SC','SD'"; $sql = "select * from mytable where states in (:states)"; $params = array(':states'=>$states); and I use my function $result = $this->selectArrayAssoc($sql, $params); where my selectArrayAssoc function as following public function selectArrayAssoc($sql, $params = array()){ try{ $sth = $this->db->prepare($sql); $sth->execute($params); $result = $sth->setFetchMode(PDO::FETCH_ASSOC); return $sth->fetchAll(); }catch(PDOException $e){ print $e->getMessage(); //Log this to a file later when in production exit; } } it does not take the quoted variables, I think it is suppressing, in such cases how to deal with this.

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  • Drupal Adding Span inside A tags in Nice Menus

    - by Chris
    I am trying to add drop down menus to a drupal theme which uses text sliding door CSS rounding. The current version uses a primary links injection of the span into the a tags, which works fine. But doesn't support drop down menus. Working code: <?php print theme('links', $primary_links, array('class' => 'links primary-links')) ?> In the template with a template.php file addition: <?php // function for injecting spans inside anchors which we need for the theme's rounded corner background images function strands_guybrush_links($links, $attributes = array('class' => 'links')) { $output = ''; if (count($links) > 0) { $output = '<ul'. drupal_attributes($attributes) .'>'; $num_links = count($links); $i = 1; foreach ($links as $key => $link) { $class = $key; // Add first, last and active classes to the list of links to help out themers. if ($i == 1) { $class .= ' first'; } if ($i == $num_links) { $class .= ' last'; } if (isset($link['href']) && ($link['href'] == $_GET['q'] || ($link['href'] == '<front>' && drupal_is_front_page()))) { $class .= ' active'; } $output .= '<li'. drupal_attributes(array('class' => $class)) .'>'; if (isset($link['href'])) { $link['title'] = '<span class="link">' . check_plain($link['title']) . '</span>'; $link['html'] = TRUE; // Pass in $link as $options, they share the same keys. $output .= l($link['title'], $link['href'], $link); } else if (!empty($link['title'])) { // Some links are actually not links, but we wrap these in <span> for adding title and class attributes if (empty($link['html'])) { $link['title'] = check_plain($link['title']); } $span_attributes = ''; if (isset($link['attributes'])) { $span_attributes = drupal_attributes($link['attributes']); } $output .= '<span'. $span_attributes .'>'. $link['title'] .'</span>'; } $i++; $output .= "</li>\n"; } $output .= '</ul>'; } return $output; } ?> So I have added the [Nice Menu module][1] which works well and allows the drop down menu functions for my navigation which is now addressed from the template using: <?php print theme_nice_menu_primary_links() ?> The issue is that the a tags need to have spans inside to allow for the selected state markup. I have tried every angle I could find to edit the drupal function menu_item_link which is used by nice menus to build the links. E.g. I looked at the drupal forum for two days and no joy. The lines in the module that build the links are: function theme_nice_menu_build($menu) { $output = ''; // Find the active trail and pull out the menus ids. menu_set_active_menu_name('primary-links'); $trail = menu_get_active_trail('primary-links'); foreach ($trail as $item) { $trail_ids[] = $item['mlid']; } foreach ($menu as $menu_item) { $mlid = $menu_item['link']['mlid']; // Check to see if it is a visible menu item. if ($menu_item['link']['hidden'] == 0) { // Build class name based on menu path // e.g. to give each menu item individual style. // Strip funny symbols. $clean_path = str_replace(array('http://', '<', '>', '&', '=', '?', ':'), '', $menu_item['link']['href']); // Convert slashes to dashes. $clean_path = str_replace('/', '-', $clean_path); $class = 'menu-path-'. $clean_path; $class .= in_array($mlid, $trail_ids) ? ' active' : ''; // If it has children build a nice little tree under it. if ((!empty($menu_item['link']['has_children'])) && (!empty($menu_item['below']))) { // Keep passing children into the function 'til we get them all. $children = theme('nice_menu_build', $menu_item['below']); // Set the class to parent only of children are displayed. $class .= $children ? ' menuparent ' : ''; // Add an expanded class for items in the menu trail. $output .= '<li id="menu-'. $mlid .'" class="'. $class .'">'. theme('menu_item_link', $menu_item['link']); // Build the child UL only if children are displayed for the user. if ($children) { $output .= '<ul>'; $output .= $children; $output .= "</ul>\n"; } $output .= "</li>\n"; } else { $output .= '<li id="menu-'. $mlid .'" class="'. $class .'">'. theme('menu_item_link', $menu_item['link']) .'</li>'."\n"; } } } return $output; } As you can see the $output uses menu_item_link to parse the array into links and to added the class of active to the selected navigation link. The question is how do I add a span inside the a tags OR how do I wrap the a tags with a span that has the active class to style the sliding door links? drupal.org/project/nice_menus drupal.org/node/53233

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  • how to get textfield data in win32-gui perl

    - by amit
    hi i want to store textfield data in a variable but my code is not working here is my code use Win32::GUI(); my $W1 = Win32::GUI::Window-new( -name = "W1", -title = "First Window", -pos = [ 100, 100 ], -size = [ 300, 200 ], ); $W1-AddButton( -name = "ButtonW1", -text = "Enter Chipname", -pos = [ 87, 100 ], #-ok = 1, ); $W1-AddTextfield( -name = "chipfield", -left = 20, -top = 40, -width = 250, -height = 20, # -prompt = ["Mix ",30], ); $W1-Show(); Win32::GUI::Dialog(); exit(0); sub W1_Terminate { return -1; } sub ButtonW1_Click { $chipname = $W1-chipfield-Text(), print $chipname; #return 0; } please help me where is problem

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  • Missing output when running system command in perl/cgi file

    - by aladine
    I need to write a CGI program and it will display the output of a system command: script.sh echo "++++++" VAR=$(expect -c " spawn ssh -o StrictHostKeyChecking=no $USER@$HOST $CMD match_max 100000 expect \"*?assword:*\" send -- \"$PASS\r\" send -- \"\r\" expect eof ") echo $VAR echo "++++++" In CGI file: my $command= "ksh ../cgi-bin/script.sh"; my @output= `$command`; print @output; Finally, when I run the CGI file in unix, the $VAR is a very long string including \n and some delimiters. However, when I run on web server, the output is ++++++ ++++++ So $VAR is missing when passing in the web interface/browser. I know maybe the problem is $VAR is very long string. But anyway, is there anyway to solve this problem except writing the output to a file then retrieve it from browser? Thanks if you are interested in my question.

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