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• Simple Perl script help required.

  - by Umar Siddique

  I'm looking to create a perl script that I will run on a JavaScript file to automatically change ( ' ) that breaks the script. Example: file.js document.writeln('&#187; <a href="/LINK1" TARGET="_blank">Lorem ipsum lorem 1</a><br>'); document.writeln('&#187; <a href="/LINK2" TARGET="_blank">Lorem ipsum lor'em x em 2</a><br>'); document.writeln('&#187; <a href="/LINK3" TARGET="_blank">Lorem ipsum lorem 3</a><br>'); In 2nd line " Lorem ipsum lor'em x em 2 " contains a single quote which will be removed by script. Rest of the single quotes will be there like " document.writeln(' "

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• Can you hep me with my Perl homework?

  - by riya

  Could someone write simple Perl programs for the following scenarios: convert a list from {1,2,3,4,5,7,9,10,11,12,34} to {1-5,7,9-12,34} to sort a list of negative numbers to insert values to hash array there is a file with content: C1 c2 c3 c4 r1 r2 r3 r4 put it into an hash array where keys = {c1,c2,c3,c4} and values = {r1,r2,r3,r4} There are testcases running each testcase runs as a process and has a process ID. The logs are logged in a logfile process ID appended to each line. Prog to find out if the test case has passed or failed. The program shoud be running till the processes are running and display output.

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• Convert Chunk of Data into Tabular Format Using Perl

  - by neversaint

  I have a data that looks like this 1:SRX000566 Submitter: WoldLab Study: RNASeq expression profiling for ENCODE project(SRP000228) Sample: Human cell line GM12878(SRS000567) Instrument: Solexa 1G Genome Analyzer Total: 4 runs, 62.7M spots, 2.1G bases Run #1: SRR002055, 11373440 spots, 375323520 bases Run #2: SRR002063, 22995209 spots, 758841897 bases Run #3: SRR005091, 13934766 spots, 459847278 bases Run #4: SRR005096, 14370900 spots, 474239700 bases 2:SRX000565 Submitter: WoldLab Study: RNASeq expression profiling for ENCODE project(SRP000228) Sample: Human cell line GM12878(SRS000567) Instrument: Solexa 1G Genome Analyzer Total: 3 runs, 51.2M spots, 1.7G bases Run #1: SRR002052, 12607931 spots, 416061723 bases Run #2: SRR002054, 12880281 spots, 425049273 bases Run #3: SRR002060, 25740337 spots, 849431121 bases 3:SRX012407 Submitter: GEO Study: GSE17153: Illumina sequencing of small RNAs from C. elegans embryos(SRP001363) Sample: Caenorhabditis elegans(SRS006961) Instrument: Illumina Genome Analyzer II Total: 1 run, 3M spots, 106.8M bases Run #1: SRR029428, 2965597 spots, 106761492 bases Is there a compact way to convert them into tabular format (tab separated). Hence 1 entry/row per chunk. In these case 3 rows. I tried this but doesn't seem to work. perl -laF/\n/ -000ne"print join chr(9),@F" myfile.txt

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• Teach Perl as a first language?

  - by yossale

  I need to teach a non-programmer the basics of computer programming + some basic programming skills (- He's going to be in a position between the clients and the programmers , so the company requires him to learn the basic concepts of programming). I thought of Perl - You can teach it without getting into typing and pointers and it's syntax is very close to human (precious "bless" :) ) - but I'm a bit troubled because I feel like I'm going to "spoil" him for other languages in the future (C,C++,Java - What some people call "Real" languages) - exactly because of the reasons mentioned above. What do you think?

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• Testing a command from Perl and checking content of a file

  - by justintime

  I want to test a script I have written in Perl and specifically check what output it writes to file. I wrote it some time ago and don't want to modify it to the extent of turning it into a module but would like to regression test it before adding some small functional changes. So far I have use Test::Command tests = 10; exit_is_num($cmd, 0); .... But the command produces some files and I want to check those files are the same as I expect (either equal or match some regexp). Any suggestions

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• Perl system call

  - by claferri

  I'm a beginner in Perl and I have some trouble using the "system" call. Here is a little piece of code where I try to execute 2 shell commands : # First command is : # dot -Tpng $dottmpfile > $pngfile # Second command is : # rm $dottmpfile if (!($pngfile eq "")) { my @args = ("dot", "-Tpng", $dottmpfile, " > ", $pngfile); system (join (' ' , @args )) or die "system @args failed : $!"; unlink $dottmpfile; } EDIT : Here is my code now, and I still get an error : system dot -Tpng toto.dot > toto.png failed : Inappropriate ioctl for device at /home/claferri/bin/fractal.pl line 79. I've used this to produce this piece of code.

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• User input in perl - Issue with running script in KomodoEdit

  - by golwalkar.rohan

  i wrote this tiny code on gedit and ran it :- #/usr/bin/perl print "Enter the radius of circle: \n"; $radius = <>; chomp $radius; print "radius is: $radius\n"; $circumference = (2*3.141592654) * $radius; print "Circumference of circle with radius : $radius = $circumference\n"; Runs fine using command line.Ran the same code on Komodo Edit: facing an issue i expect first line as output as :- Enter the radius of circle: whearas it waits on the screen i.e waiting for an input and after that runs everything in sequence -- can someone tell me why it runs fine with command line but not Komodo?

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• Doing permutation of different arrays in perl

  - by nubie2

  Hello! I want to do permutation in perl. For example I have three arrays. ["big", "tiny", "small"] and then I have ["red", "yellow", "green"] and also ["apple", "pear", "banana"]. How do I get: ["big", "red", "apple"] ["big", "red", "pear"] ..etc.. ["small", "green", "banana"] I understand this is called permutation. But I am not sure how to do it. Also I don't know how many arrays I can have. There may be three or four, so I don't want to do nested loop.

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• Perl file test operator help

  - by Aaron Moodie

  This is a really basic issue, but I'm new to perl and cannot work out what the issue is. I'm just trying to isolate the files in a directory, but the -d operator keeps treating all the folder contents as files ... @contents is my array, and when I run this: foreach $item(@contents) { if (-d $item) { next; } print"$item is a file\n"; } I keep getting both folders and files. Alternatively, if I use -f, I get nothing. edit: this is the output - file01.txt is a file folder 01 is a file folder 02 is a file Screen shot 2010-04-18 at 1.26.17 PM.png is a file I'm running this on OSX

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• Matching n parentheses in perl regex

  - by coding_hero

  Hi, I've got some data that I'm parsing in Perl, and will be adding more and more differently formatted data in the near future. What I would like to do is write an easy-to-use function, that I could pass a string and a regex to, and it would return anything in parentheses. It would work something like this (pseudocode): sub parse { $data = shift; $regex = shift; $data =~ eval ("m/$regex/") foreach $x ($1...$n) { push (@ra, $x); } return \@ra; } Then, I could call it like this: @subs = parse ($data, '^"([0-9]+)",([^:]*):(\W+):([A-Z]{3}[0-9]{5}),ID=([0-9]+)'); As you can see, there's a couple of issues with this code. I don't know if the eval would work, the 'foreach' definitely wouldn't work, and without knowing how many parentheses there are, I don't know how many times to loop. This is too complicated for split, so if there's another function or possibility that I'm overlooking, let me know. Thanks for your help!

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• Perl When is using AUTOLOAD OK?

  - by Robert S. Barnes

  In "Perl Best Practices" the very first line in the section on AUTOLOAD is: Don't use AUTOLOAD However all the cases he describes are dealing with OO or Modules. I have a stand alone script in which some command line switches control which versions of particular functions get defined. Now I know I could just take the conditionals and the evals and stick them naked at the top of my file before everything else, but I find it convenient and cleaner to put them in AUTOLOAD at the end of the file. Is this bad practice / style? If you think so why, and is there a another way to do it?

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• How To Get The Outout of Win32::Process command in perl

  - by rockyurock

  hello all, i am using "use Win32::Process" for my application run as below, it runs fine but i did not get any way to get the output to a .txt file. i used NORMAL_PRIORITY_CLASS rather than CREATE_NEW_CONSOLE to get the output on the same terminal itself but i don't know how to redirect it to a txt file. /rocky !/usr/bin/perl use strict; use warnings; use Win32::Process; Win32::Process::Create(my $ProcessObj, "iperf.exe", "iperf.exe -u -s -p 5001", 0, NORMAL_PRIORITY_CLASS, ".") || die ErrorReport(); my @command_output; push @command_output,$ProcessObj; open FILE, "zz.txt" or die $!; print FILE @command_output; close FILE; sleep 10; $ProcessObj-Kill(0); sub ErrorReport{ print Win32::FormatMessage( Win32::GetLastError() ); }

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• Confused by Perl grep function

  - by titaniumdecoy

  I don't understand the last line of this function from Programming Perl 3e. Here's how you might write a function that does a kind of set intersection by returning a list of keys occurring in all the hashes passed to it: @common = inter( \%foo, \%bar, \%joe ); sub inter { my %seen; for my $href (@_) { while (my $k = each %$href) { $seen{$k}++; } } return grep { $seen{$_} == @_ } keys %seen; } I understand that %seen is a hash which maps each key to the number of times it was encountered in any of the hashes provided to the function.

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• Perl - What is Larry?

  - by user350571

  I was reading some Perl book and I find meant-to-be funny mentions to something named Larry. Some times it is mixed in a religious context (like "Larry multiplied the code and distributed among coders"). Since I'm not stupid, I tried to think a bit and I believe I finally got it... It's about Larry the cow from Gentoo right?. And the religious context is because cows are normally associated to religion. Anyway, why the references? There is something about camels and cows together that I'm not following?

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• Sorting manually generated index using perl script

  - by Pradeep Singh

  \item Bernoulli measure, 14 \item cellular automata \subitem Soft, 3, 28 \subitem balance theorem, 23, 45 \item tiles \subitem tiling problem, 19, 58 \subitem aperiodic tile set, 18, 45 \item Garden-of-Eden -theorem, 12 \item Bernoulli measure, 15, 16, 35 \item cellular automata \subitem balance theorem, 9, 11, 14 \subitem blocking word, 22, 32 \item Garden-of-Eden -theorem, 32 I have to sort the above index alphabetically using a perl script. Duplicate item or subitem entries should be merged and their numbers should be sorted. The subitems also should be sorted under respective item and their numbers should be also sorted. If same item is repeated in more than one place with subitems all the subitems should be merged under a single item and also subitems should be sorted

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• HASH reference error with HTTP::Message::decodable

  - by scarba05

  Hi, I'm getting an "Can't use an undefined value as a HASH reference" error trying to call HTTP::Message::decodable() using Perl 5.10 / libwww installed on Debian Lenny OS using the aptitude package manager. I'm really stuck so would appreciate some help please. Here's the error: Can't use an undefined value as a HASH reference at (eval 2) line 1. at test.pl line 4 main::__ANON__('Can\'t use an undefined value as a HASH reference at enter code here`(eval 2)...') called at (eval 2) line 1 HTTP::Message::__ANON__() called at test.pl line 6 Here's the code: use strict; use HTTP::Request::Common; use Carp; $SIG{ __DIE__ } = sub { Carp::confess( @_ ) }; print HTTP::Message::decodable();

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• Why does HTTP::Message::decodable complain about "Can't use an undefined value as a HASH reference"?

  - by scarba05

  I'm getting a Can't use an undefined value as a HASH reference error trying to call HTTP::Message::decodable() using Perl 5.10 / libwww installed on Debian Lenny OS using the aptitude package manager. I'm really stuck so would appreciate some help please. Here's the error: Can't use an undefined value as a HASH reference at (eval 2) line 1. at test.pl line 4 main::__ANON__('Can\'t use an undefined value as a HASH reference at enter code here`(eval 2)...') called at (eval 2) line 1 HTTP::Message::__ANON__() called at test.pl line 6 Here's the code: use strict; use HTTP::Request::Common; use Carp; $SIG{ __DIE__ } = sub { Carp::confess( @_ ) }; print HTTP::Message::decodable();

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• What CPAN module can send all warnings and errors to a log file?

  - by mithaldu

  I'm maintaining some website code that currently dumps all errors and warnings into the apache log. This is a problem for me as i cannot access that due to lack of root. As such I am looking to redirect all warnings and errors to a specified log file under my control. I'd like to do so without preventing those messages from going through their usual patch of execution. Now, before i spend a lot of time fiddling with the Perl internals and possibly breaking things unawares I thought I'd look for a CPAN module that does this. However, I either do not know how to properly search for this, or I am overlooking something and thus cannot find any module that seems suitable. Thus my asking here: What CPAN module would i use for this task?

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• What CPAN module can summarize error logs?

  - by mithaldu

  I'm maintaining some website code that will soon dump all its errors and warnings into a log file. In order to make this a bit more pro-active i plan to parse this log file daily, summarize the warnings and errors (i.e. count the occurrence of each specific one and group by either warning/error) and then email this to the devs on the project. This would likely admittedly be rather trivial with a hash and some further fiddling, I wondered if there is a suitable module on CPAN that i could use to do this task. It would either be one that summarizes specifically perl error/warnings logs or one that summarizes arbitrary text files. Any suggestions?

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• perl hashes - comparing keys and values

  - by Aaron Moodie

  I've been reading over the perl doc, but I can't quite get my head around hashes. I'm trying to find if a hash key exists, and if so, compare is't value. The thing that is confusing me is that my searches say that you find if a key exists by if (exists $files{$key}) , but that $files{$key} also gives the value? the code i'm working on is: foreach my $item(@new_contents) { next if !-f "$directory/$item"; my $date_modified = (stat("$directory/$item"))[9]; if (exists $files{$item}) { if ($files{$item} != $date_modified { $files{$item} = $date_modified; print "$item has been modified\n"; } } else { $files{$item} = $date_modified; print "$item has been added\n"; } }

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• find_all_links() Perl function don't find all links

  - by Malincy Montoya

  I'm starting with Perl and I'm trying to do a script that log me out of a page (I already did the login one). The think is, I'm trying to use find_link function from WWW::Mechanize (I also tried WWW::Mechanize::Firefox) to find the logout link, but it's not working. So, my question is: is the event onmouseover avoiding that link to be founded? I think WWW::Mechanize::Firefox supports javascript but maybe it's not correct. Logout Is there a way to do what I want? Any help or suggestions will be highly appreciated.

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• Pipeline For Downloading and Processing Files In Unix/Linux Environment With Perl

  - by neversaint

  I have a list of files URLS where I want to download them: http://somedomain.com/foo1.gz http://somedomain.com/foo2.gz http://somedomain.com/foo3.gz What I want to do is the following for each file: Download foo1,2.. in parallel with wget and nohup. Every time it complete download process them with myscript.sh What I have is this: #! /usr/bin/perl @files = glob("foo*.gz"); foreach $file (@files) { my $downurls = "http://somedomain.com/".$file; system("nohup wget $file &"); system("./myscript.sh $file >> output.txt"); } The problem is that I can't tell the above pipeline when does the file finish downloading. So now it myscript.sh doesn't get executed properly. What's the right way to achieve this?

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• Perl: Recursively rename all files and directories

  - by user305801

  I need to recursively rename every file and directory. I convert spaces to underscores and make all file/directory names to lowercase. How can I make the following script rename all files in one run? Currently the script needs to be run several times before all the files/directories are converted. The code is below: #!/usr/bin/perl use File::Find; $input_file_dir = $ARGV[0]; sub process_file { $clean_name=lc($_); $clean_name=~s/\s/_/g; rename($_,$clean_name); print "file/dir name: $clean_name\n"; } find(\&process_file, $input_file_dir);

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• Perl Math::Business::EMA help

  - by Dustin

  Script pulls data from mysql: $DBI::result = $db->prepare(qq{ SELECT close FROM $table WHERE day <= '$DATE' ORDER BY day DESC LIMIT $EMA }); $DBI::result->execute(); while($row = $DBI::result->fetchrow) { print "$row\n"; }; with the following example results: 1.560 1.560 1.550... But I need to work out the EMA using Math::Business::EMA; and I'm not sure how to calculate this while maintaining the accuracy. EMA is weighted and My lack of Perl knowledge is not helping.

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• Kill a Perl system call after a timeout

  - by Fergal

  I've got a Perl script I'm using for running a file processing tool which is started using backticks. The problem is that occasionally the tool hangs and It needs to be killed in order for the rest of the files to be processed. Whats the best way best way to apply a timeout after which the parent script will kill the hung process? At the moment I'm using: foreach $file (@FILES) { $runResult = `mytool $file >> $file.log`; } But when mytool hangs after n seconds I'd like to be able to kill it and continue to the next file.

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