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  • Making a sldprt to PDB file converter?

    - by user122083
    I wanted to create a parser that can read a solidworks file and turn it into a protein data bank file. This has already been done in a program called DiamondCAD. http://www.zyvex.com/Research/DiamondCAD.html I waant to make a parser that can parse the data and then visualize it the same way as DiamondCAD. I have downloaded and opened solidworks files before and they make no sense to me with never before seen symbols and looks like ancient writing. Does anyone know how a sldprt. file is structured and how it can be parsed into a PDB file? (A software called VMD converts a PDB to Obj. file so it is proof of concept)

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  • Python 3.4.0a4 disponible en téléchargement, nouvelles fonctions intégrées, amélioration des modules et de la sécurité

    Python 3.4.0a4 disponible en téléchargement, nouvelles fonctions intégrées, amélioration des modules et de la sécurité La Python Software Foundation a publié la quatrième et dernière alpha de Python 3.4. Le langage de programmation objet revient avec de nouveaux modules dans la bibliothèque, de nouvelles fonctions intégrées, une amélioration de la sécurité et également de certains modules. En revanche aucune nouvelle fonctionnalité n'a été apportée à la syntaxe. Côté bibliothèque, Python...

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  • Colliding Rects [migrated]

    - by user73400
    I have been working on this game, but I have a question when it comes to collision detection. Can I check for collision and have it return True: example: def collide(self, EnemyTank): tank_collision = pygame.sprite.collide_rect(self.rect, EnemyTank.rect) if tank_collision == True: return True And then make it perform an action like this: if player.collide == True: e_tank_x += 0 I am new to programming so please bear with me, I am trying as hard as I can and any comments or suggestions would also be very appreciated.

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  • Rundeck get verbose output of command executing on node

    - by Leon Stafford
    I have Rundeck executing a remote script, which is in python is using print statements to return output normally such as: $ python mytest.py PASS: Condition 1 passed PASS: Condition 2 passed PASS: and so on... When I run this via Rundeck, however, it doesn't show me the same print generated outputs as above. In Rundeck's most detailed Debug output mode, I only receive the following: 06:31:12 Permanently added 'myremotenode.com' (RSA) to the list of known hosts. 06:31:12 SSH_MSG_NEWKEYS sent 06:31:12 SSH_MSG_NEWKEYS received 06:31:12 SSH_MSG_SERVICE_REQUEST sent 06:31:13 SSH_MSG_SERVICE_ACCEPT received 06:31:13 Authentications that can continue: publickey,password,keyboard-interactive 06:31:13 Next authentication method: publickey 06:31:13 Authentication succeeded (publickey). 06:31:13 /cygdrive/c/Program Files (x86)/Mozil... 06:32:06 Adding reference: ant.PropertyHelper 06:32:06 Setting project property: sshexec.output -> /cygdrive/c/Prog... I know that the remote script is actually executing just as usual, as I'm receiving other emails generated by the ~30min long script. Obviously, I don't want to have to wait 30mins to see the result of each print statement within the python script. How can I get the same level of output in Rundeck as I do in the bash shell directly?

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  • Problem with deploying django application on mod_wsgi

    - by Shehzad009
    Hello, I seem to have a problem deploying django with mod_wsgi. In the past I've used mod_python but I want to make the change. I have been using Graham Dumpleton notes here http://code.google.com/p/modwsgi/wiki/IntegrationWithDjango1, but it still seem to not work. I get a Internal Server Error. django.wsgi file: import os import sys sys.path.append('/var/www/html') sys.path.append('/var/www/html/c2duo_crm') os.environ['DJANGO_SETTINGS_MODULE'] = 'c2duo_crm.settings' import django.core.handlers.wsgi application = django.core.handlers.wsgi.WSGIHandler() WSGIScriptAlias / /var/www/html/c2duo_crm/apache/django.wsgi Apache httpd file: <Directory /var/www/html/c2duo_crm/apache> Order allow,deny Allow from all </Directory> In my apache error log, it says I have this error This is not all of it, but I've got the most important part: [Errno 13] Permission denied: '/.python-eggs' [Thu Mar 03 14:59:25 2011] [error] [client 127.0.0.1] [Thu Mar 03 14:59:25 2011] [error] [client 127.0.0.1] The Python egg cache directory is currently set to: [Thu Mar 03 14:59:25 2011] [error] [client 127.0.0.1] [Thu Mar 03 14:59:25 2011] [error] [client 127.0.0.1] /.python-eggs [Thu Mar 03 14:59:25 2011] [error] [client 127.0.0.1] [Thu Mar 03 14:59:25 2011] [error] [client 127.0.0.1] Perhaps your account does not have write access to this directory? You can [Thu Mar 03 14:59:25 2011] [error] [client 127.0.0.1] change the cache directory by setting the PYTHON_EGG_CACHE environment [Thu Mar 03 14:59:25 2011] [error] [client 127.0.0.1] variable to point to an accessible directory.

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  • Pip installs on Archlinux fails to build egg

    - by stmfunk
    I was trying to install nltk on my Archlinux server but it repeatedly fails with the following error output /usr/lib/python3.3/distutils/dist.py:257: UserWarning: Unknown distribution option: 'entry_points' warnings.warn(msg) /usr/lib/python3.3/distutils/dist.py:257: UserWarning: Unknown distribution option: 'zip_safe' warnings.warn(msg) /usr/lib/python3.3/distutils/dist.py:257: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) usage: setup.py [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...] or: setup.py --help [cmd1 cmd2 ...] or: setup.py --help-commands or: setup.py cmd --help error: invalid command 'bdist_egg' /tmp/pip_build_root/nltk/distribute-0.6.21-py3.3.egg Traceback (most recent call last): File "./distribute_setup.py", line 143, in use_setuptools raise ImportError ImportError During handling of the above exception, another exception occurred: Traceback (most recent call last): File "", line 16, in File "/tmp/pip_build_root/nltk/setup.py", line 23, in distribute_setup.use_setuptools() File "./distribute_setup.py", line 145, in use_setuptools return _do_download(version, download_base, to_dir, download_delay) File "./distribute_setup.py", line 125, in _do_download _build_egg(egg, tarball, to_dir) File "./distribute_setup.py", line 116, in _build_egg raise IOError('Could not build the egg.') OSError: Could not build the egg. ---------------------------------------- Cleaning up... Command python setup.py egg_info failed with error code 1 in /tmp/pip_build_root/nltk Storing complete log in /root/.pip/pip.log This error is also occurring for matplotlib buts thats the only other library I found it to fail on so far. pyyaml installs fine. The install works perfectly under virtualenv on my mac which is using python 2.7 but the server is using python 3.3. Any help is appreciated.

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  • Mercurial hook fails on Windows

    - by Nick Hodges
    I am trying to use the headcount hook (https://bitbucket.org/dgc/headcount/overview) with my main develop repository. I pulled the code and placed it in C:\Python26\Lib\site-packages. I made the following entries into my hgrc file: [hooks] pretxnchangegroup.headcount = python:headcount.headcount.hook [headcount] push_ok = * commit_ok = * warnmsg = %(headcount)d new heads detected. You may not push new heads to this repository. debug = False All this is as per the install instructions. I then cloned the repository, created a branch, committed a change to that branch, and then issued: hg push -f as a test. However, this fails with: C:\junk\htmlwriter>hg push -f pushing to c:\code\htmlwriter searching for changes adding changesets adding manifests adding file changes added 1 changesets with 1 changes to 1 files transaction abort! rollback completed abort: pretxnchangegroup.headcount hook is invalid (import of "headcount.headcou nt" failed) I then ran this: C:\Python26>python c:\Python26\Lib\site-packages\headcount\headcount.py Traceback (most recent call last): File "c:\Python26\Lib\site-packages\headcount\headcount.py", line 2, in <modul e> import mercurial.node ImportError: No module named mercurial.node I'm far from a python expert, so can someone help me figure out how to get the headcount hook to run inside my mercurial environment? Details: Windows 7, Mercurial 1.7.2, TortoiseHg 1.1.7

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  • I created a Python egg!!! Now... what do I do with it?

    - by froadie
    I've finally figured out how to create a Python egg and gotten it to work. Now... what do I do with it? How do I use it? How do I ensure that everything was correctly included? (Simple steps please... not just redirection to another site. I've googled, but it's confusing me, and I was hoping someone could explain it in a couple of simple bullet points or sentences.)

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  • PyCrypto and GMP library not found error [Mac OS 10.6.3]

    - by sarasota
    I'm trying to install pycrypto-2.1.0 but attempt to do with 'python setup.py build' elicits: running build running build_py running build_ext warning: GMP library not found; Not building Crypto.PublicKey._fastmath. I installed GMP (gmp-4.3.2) and it's in: /usr/local/lib How do I get python/pycrypto to recognize that GMP is already present on my system? Mac OS: 10.6.3 Python version: 2.6.1

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  • the Memory problem about MySQL "SELECT *"

    - by Austin Huang
    Dear all: I'm new to MySQL, and I have a question about the memory. I have a 200mb table(MyISAM, 2,000,000 rows), and I try to load all of it to the memory. I use python(actually MySQLdb in python) with sql: SELECT * FROM table. However, from my linux "top" I saw this python process uses 50% of my memory(which is total 6GB) I'm curious about why it uses about 3GB memory only for a 200 mb table. Thanks in advance!

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  • build .pyc prob

    - by Apache
    hi experts, i build .py as follow python /root/pyinstaller-1.4/Makespec.py test.py then python /root/pyinstaller-1.4/Build.py test.spec this working fine then i test to build with my .pyc as follow python /root/pyinstaller-1.4/Makespec.py test.pyc then python /root/pyinstaller-1.4/Build.pyc test.spec but its generating error as follow checking Analysis building because inputs changed running Analysis outAnalysis0.toc Analyzing: /root/pyinstaller-1.4/support/_mountzlib.py Analyzing: /root/pyinstaller-1.4/support/useUnicode.py Analyzing: test.pyc Traceback (most recent call last): File "/root/pyinstaller-1.4/Build.py", line 1160, in main(args[0], configfilename=opts.configfile) File "/root/pyinstaller-1.4/Build.py", line 1148, in main build(specfile) File "/root/pyinstaller-1.4/Build.py", line 1111, in build execfile(spec) File "test.spec", line 3, in pathex=['/root/test']) File "/root/pyinstaller-1.4/Build.py", line 245, in init self.postinit() File "/root/pyinstaller-1.4/Build.py", line 196, in postinit self.assemble() File "/root/pyinstaller-1.4/Build.py", line 314, in assemble analyzer.analyze_script(script) File "/root/pyinstaller-1.4/mf.py", line 559, in analyze_script co = compile(string.replace(stuff, "\r\n", "\n"), fnm, 'exec') TypeError: compile() expected string without null bytes why this error occur, cannot we build using .pyc, or there is other way to build it,

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  • How to install mysql connector

    - by Naresh
    I have downloaded mysqlDb, and while installing it I am getting errors like: C:\Documents and Settings\naresh\Desktop\MySQL-python-1.2.3c1setup.py build Traceback (most recent call last): File "C:\Documents and Settings\naresh\Desktop\MySQL-python-1.2.3c1 \setup.py",line15, in metadata, options = get_config() File "C:\Documents and Settings\naresh\Desktop\MySQL-python-1.2.3c1 \setup_windows.py", line 7, in get_config serverKey = _winreg.OpenKey(_winreg.HKEY_LOCAL_MACHINE, options['registry_key']) WindowsError: [Error 2] The system cannot find the file specified What can I do to address this?

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  • Python3 function annotations for type hinting versus Boo

    - by b0lt
    I've started on a medium-sized project in python, and I decided to use python 3 because I'm not using any large external libraries and py3k has some nice new syntactic sugar and more importantly function annotations. However, it seems like none of WingIDE, Pydev, or pycharm actually have any support for type hinting using function annotations. If I want something resembling static typing in python, is switching to boo a reasonable option?

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  • Can generateDS be used like xsd.exe

    - by BozoJoe
    Can I use generateDS.py in python in a similar way that I would use xsd.exe to create C# classes from xsd? Basically, given an xsd schema I want to create a data structure, in python, fill its data in, and then render it into an xml string. perhaps pyXSD is better? oh, and yes, I'm a python newbie

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  • How to replace openSSL calls with C# code?

    - by fonix232
    Hey there again! Today I ran into a problem when I was making a new theme creator for chrome. As you may know, Chrome uses a "new" file format, called CRX, to manage it's plugins and themes. It is a basic zip file, but a bit modified: "Cr24" + derkey + signature + zipFile And here comes the problem. There are only two CRX creators, written in Ruby or Python. I don't know neither language too much (had some basic experience in Python though, but mostly with PyS60), so I would like to ask you to help me convert this python app to a C# code that doesn't depend on external programs. Also, here is the source of crxmake.py: #!/usr/bin/python # Cribbed from http://github.com/Constellation/crxmake/blob/master/lib/crxmake.rb # and http://src.chromium.org/viewvc/chrome/trunk/src/chrome/tools/extensions/chromium_extension.py?revision=14872&content-type=text/plain&pathrev=14872 # from: http://grack.com/blog/2009/11/09/packing-chrome-extensions-in-python/ import sys from array import * from subprocess import * import os import tempfile def main(argv): arg0,dir,key,output = argv # zip up the directory input = dir + ".zip" if not os.path.exists(input): os.system("cd %(dir)s; zip -r ../%(input)s . -x '.svn/*'" % locals()) else: print "'%s' already exists using it" % input # Sign the zip file with the private key in PEM format signature = Popen(["openssl", "sha1", "-sign", key, input], stdout=PIPE).stdout.read(); # Convert the PEM key to DER (and extract the public form) for inclusion in the CRX header derkey = Popen(["openssl", "rsa", "-pubout", "-inform", "PEM", "-outform", "DER", "-in", key], stdout=PIPE).stdout.read(); out=open(output, "wb"); out.write("Cr24") # Extension file magic number header = array("l"); header.append(2); # Version 2 header.append(len(derkey)); header.append(len(signature)); header.tofile(out); out.write(derkey) out.write(signature) out.write(open(input).read()) os.unlink(input) print "Done." if __name__ == '__main__': main(sys.argv) Please could you help me?

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  • Django ImageField validation & PIL

    - by Zayatzz
    Hello On sunday, I had problems with python modules, when I installed stackless python. Now I have compiled and installed : setuptools & python-mysqldb and i got my django project up and running again. (i also reinstalled django-1.1), Then I compiled and installed, jpeg, freetype2 and PIL. I also started using mod_wsgi instead of mod_python. But when uploading imagefield in form I get validationerror: Upload a valid image. The file you uploaded was either not an image or a corrupted image. Searchmonkey shows that it comes from field.py imagefield validation. before raising this error it imports Image from PIL, opens file and verfies it. I tried importing PIL from python prompt manually - it worked just fine. Same with Image.open and Image.verify. So what could be causing this problem? Alan

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  • MPI signal handling

    - by Seth Johnson
    When using mpirun, is it possible to catch signals (for example, the SIGINT generated by ^C) in the code being run? For example, I'm running a parallelized python code. I can except KeyboardInterrupt to catch those errors when running python blah.py by itself, but I can't when doing mpirun -np 1 python blah.py. Does anyone have a suggestion? Even finding how to catch signals in a C or C++ compiled program would be a helpful start. If I send a signal to the spawned Python processes, they can handle the signals properly; however, signals sent to the parent orterun process (i.e. from exceeding wall time on a cluster, or pressing control-C in a terminal) will kill everything immediately.

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  • How to integrate pep8.py in Eclipse?

    - by DZPM
    A little background: PEP 8 is the Style Guide for Python Code. It contains the conventions all python programmers should follow. pep8.py is a (very useful) script that checks the code formating of a given python script, according to PEP 8. Eclipse is a great IDE. With the Pydev extension, it that can be used to develop Python I run pep8.py manually when I'm scripting, but with bigger projects I prefer to use Eclipse. It would be really useful to integrate pep8.py in Eclipse/Pydev, so it can be run automatically in all the files in the project, and point to the lines containing the warnings. Maybe there is an obvious way to do it, but I haven't found it yet. Question is: How to integrate pep8.py in Eclipse?

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  • libclntsh.so.11.1: cannot open shared object file.

    - by zhangzhong
    I want to schedule a task on linux by icrontab, and the task is written in python and have to import cx_Oracle module, so I export ORACLE_HOME and LD_LIBRARY_PATH in .bash_profile, but it raise the error: libclntsh.so.11.1: cannot open shared object file. Since it is ok to run the task by issue the command in shell like python a.py # ok I change the task in icrontab into a shell script which invoke my python script, but the exception recurred? # the shell script scheduled in icrontab #! bash python a.py Could you help how to do with it?

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  • Unable to import nltk in NetBeans

    - by afs
    Hello all, I am trying to import NLTK in my python code and I get this error: Traceback (most recent call last): File "/home/afs/NetBeansProjects/NER/getNE_followers.py", line 7, in import nltk ImportError: No module named nltk I am using NetBeans: 6.7.1, Python 2.6 NLTK. My NLTK module is installed in /usr/local/lib/python2.6/dist-packages/nltk/ and I have added this in Python paths in Netbeans. What am I missing here? Thanks in advance.

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  • What does binding mean exactly?

    - by Lily
    I always see people mention that "Python binding" and "C Sharp binding" etc. when I am actually using their C++ libraries. What does binding mean? If the library is written in C, and does Python binding means that they use SWIG kind of tool to mock a Python interface? Newbie in this field, and any suggestion will be welcomed.

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  • Installing Mercurial on Mac OS X 10.6 Snow Leopard

    - by Matthew Rankin
    Installing Mercurial on Mac OS X 10.6 Snow Leopard I installed Mercurial 1.3.1 on Mac OS X 10.6 Snow Leopard from source using the following: cd ~/src curl -O http://mercurial.selenic.com/release/mercurial-1.3.1.tar.gz tar xzvf mercurial-1.3.1.tar.gz cd mercurial-1.3.1 make ALL sudo make install This installs the site-packages files for Mercurial in /usr/local/lib/python2.6/site-packages/. I know that installing Mercurial from the Mac Disk Image will install the files into /Library/Python/2.6/site-packages/, which is the site-packages directory for the Mac OS X default Python install. I have Python 2.6.2+ installed as a Framework with its site-packages directory in: /Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/site-packages With Mercurial installed this way, I have to issue: PYTHONPATH=/usr/local/lib/python2.6/site-packages:"${PYTHONPATH}" in order to get Mercurial to work. Questions How can I install Mercurial from source with the site-packages in a different directory? Is there an advantage or disadvantage to having the site-packages in the current location? Would it be better in one of the Python site-package directories that already exist? Do I need to be concerned about virtualenv working correctly since I have modified PYTHONPATH (or any other conflicts for that matter)? Reasons for Installing from Source Dan Benjamin of Hivelogic provides the benefits of and instructions for installing Mercurial from source in his article Installing Mercurial on Snow Leopard.

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  • How different is python2.x from python3.x

    - by michael
    I'm starting to learn python right this instant. I have the old Dive Into Python book, but I see there's another one for v3. What am I going to learn that I'll have to unlearn later? If you were to start learning Python today which version would you pick?

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  • Matplotlib and WSGI/mod_python not working on Apache.

    - by Luiz C.
    Everything works as supposed to on the Django development server. In Apache, the django app also works except when matplotlib is used. Here's the error I get: No module named multiarray. Exception Type: ImportError Exception Value: No module named multiarray Exception Location: /usr/share/pyshared/numpy/core/numerictypes.py in <module>, line 81 Python Executable: /usr/bin/python Python Version: 2.6.4 From the python shell, both statements work: import numpy.core.multiarray and import multiarray. Any ideas? Thanks As I'm looking over the numpy files, I found the multiarray module, which has an extension of 'so'. My guess, is that mod_python is not reading these files.

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