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  • How can I extract paragaphs and selected lines with Perl?

    - by neversaint
    I have a text where I need to: to extract the whole paragraph under the section "Aceview summary" until the line that starts with "Please quote" (not to be included). to extract the line that starts with "The closest human gene". to store them into array with two elements. The text looks like this (also on pastebin): AceView: gene:1700049G17Rik, a comprehensive annotation of human, mouse and worm genes with mRNAs or ESTsAceView. <META NAME="title" CONTENT=" AceView: gene:1700049G17Rik a comprehensive annotation of human, mouse and worm genes with mRNAs or EST"> <META NAME="keywords" CONTENT=" AceView, genes, Acembly, AceDB, Homo sapiens, Human, nematode, Worm, Caenorhabditis elegans , WormGenes, WormBase, mouse, mammal, Arabidopsis, gene, alternative splicing variant, structure, sequence, DNA, EST, mRNA, cDNA clone, transcript, transcription, genome, transcriptome, proteome, peptide, GenBank accession, dbest, RefSeq, LocusLink, non-coding, coding, exon, intron, boundary, exon-intron junction, donor, acceptor, 3'UTR, 5'UTR, uORF, poly A, poly-A site, molecular function, protein annotation, isoform, gene family, Pfam, motif ,Blast, Psort, GO, taxonomy, homolog, cellular compartment, disease, illness, phenotype, RNA interference, RNAi, knock out mutant expression, regulation, protein interaction, genetic, map, antisense, trans-splicing, operon, chromosome, domain, selenocysteine, Start, Met, Stop, U12, RNA editing, bibliography"> <META NAME="Description" CONTENT= " AceView offers a comprehensive annotation of human, mouse and nematode genes reconstructed by co-alignment and clustering of all publicly available mRNAs and ESTs on the genome sequence. Our goals are to offer a reliable up-to-date resource on the genes, their functions, alternative variants, expression, regulation and interactions, in the hope to stimulate further validating experiments at the bench "> <meta name="author" content="Danielle Thierry-Mieg and Jean Thierry-Mieg, NCBI/NLM/NIH, [email protected]"> <!-- var myurl="av.cgi?db=mouse" ; var db="mouse" ; var doSwf="s" ; var classe="gene" ; //--> However I am stuck with the following script logic. What's the right way to achieve that? #!/usr/bin/perl -w my $INFILE_file_name = $file; # input file name open ( INFILE, '<', $INFILE_file_name ) or croak "$0 : failed to open input file $INFILE_file_name : $!\n"; my @allsum; while ( <INFILE> ) { chomp; my $line = $_; my @temp1 = (); if ( $line =~ /^ AceView summary/ ) { print "$line\n"; push @temp1, $line; } elsif( $line =~ /Please quote/) { push @allsum, [@temp1]; @temp1 = (); } elsif ($line =~ /The closest human gene/) { push @allsum, $line; } } close ( INFILE ); # close input file # Do something with @allsum There are many files like that I need to process.

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  • build error with boost spirit grammar (boost 1.43 and g++ 4.4.1) part II

    - by lurscher
    I'm having issues getting a small spirit/qi grammar to compile. i am using boost 1.43 and g++ 4.4.1. the input grammar header: inputGrammar.h #include <boost/config/warning_disable.hpp> #include <boost/spirit/include/qi.hpp> #include <boost/spirit/include/phoenix_core.hpp> #include <boost/spirit/include/phoenix_operator.hpp> #include <boost/spirit/include/phoenix_fusion.hpp> #include <boost/spirit/include/phoenix_stl.hpp> #include <boost/fusion/include/adapt_struct.hpp> #include <boost/variant/recursive_variant.hpp> #include <boost/foreach.hpp> #include <iostream> #include <fstream> #include <string> #include <vector> namespace sp = boost::spirit; namespace qi = boost::spirit::qi; using namespace boost::spirit::ascii; //using namespace boost::spirit::arg_names; namespace fusion = boost::fusion; namespace phoenix = boost::phoenix; using phoenix::at_c; using phoenix::push_back; template< typename Iterator , typename ExpressionAST > struct InputGrammar : qi::grammar<Iterator, ExpressionAST(), space_type> { InputGrammar() : InputGrammar::base_type( block ) { tag = sp::lexeme[+(alpha) [sp::_val += sp::_1]];//[+(char_ - '<') [_val += _1]]; block = sp::lit("block") [ at_c<0>(sp::_val) = sp::_1] >> "(" >> *instruction[ push_back( at_c<1>(sp::_val) , sp::_1 ) ] >> ")"; command = tag [ at_c<0>(sp::_val) = sp::_1] >> "(" >> *instruction [ push_back( at_c<1>(sp::_val) , sp::_1 )] >> ")"; instruction = ( command | tag ) [sp::_val = sp::_1]; } qi::rule< Iterator , std::string() , space_type > tag; qi::rule< Iterator , ExpressionAST() , space_type > block; qi::rule< Iterator , ExpressionAST() , space_type > function_def; qi::rule< Iterator , ExpressionAST() , space_type > command; qi::rule< Iterator , ExpressionAST() , space_type > instruction; }; the test build program: #include <iostream> #include <string> #include <vector> using namespace std; //my grammar #include <InputGrammar.h> struct MockExpressionNode { std::string name; std::vector< MockExpressionNode > operands; typedef std::vector< MockExpressionNode >::iterator iterator; typedef std::vector< MockExpressionNode >::const_iterator const_iterator; iterator begin() { return operands.begin(); } const_iterator begin() const { return operands.begin(); } iterator end() { return operands.end(); } const_iterator end() const { return operands.end(); } bool is_leaf() const { return ( operands.begin() == operands.end() ); } }; BOOST_FUSION_ADAPT_STRUCT( MockExpressionNode, (std::string, name) (std::vector<MockExpressionNode>, operands) ) int const tabsize = 4; void tab(int indent) { for (int i = 0; i < indent; ++i) std::cout << ' '; } template< typename ExpressionNode > struct ExpressionNodePrinter { ExpressionNodePrinter(int indent = 0) : indent(indent) { } void operator()(ExpressionNode const& node) const { cout << " tag: " << node.name << endl; for (int i=0 ; i < node.operands.size() ; i++ ) { tab( indent ); cout << " arg "<<i<<": "; ExpressionNodePrinter(indent + 2)( node.operands[i]); cout << endl; } } int indent; }; int test() { MockExpressionNode root; InputGrammar< string::const_iterator , MockExpressionNode > g; std::string litA = "litA"; std::string litB = "litB"; std::string litC = "litC"; std::string litD = "litD"; std::string litE = "litE"; std::string litF = "litF"; std::string source = litA+"( "+litB+" ,"+litC+" , "+ litD+" ( "+litE+", "+litF+" ) "+ " )"; string::const_iterator iter = source.begin(); string::const_iterator end = source.end(); bool r = qi::phrase_parse( iter , end , g , space , root ); ExpressionNodePrinter< MockExpressionNode > np; np( root ); }; int main() { test(); } finally, the build error is the following: (the full error trace is 20 times bigger than the allowed size for a stackoverflow question, so i posted the full version of it at http://codepad.org/Q74IVCUc) /usr/bin/make -f nbproject/Makefile-linux_amd64_devel.mk SUBPROJECTS= .build-conf make[1]: se ingresa al directorio `/home/mineq/NetBeansProjects/InputParserTests' /usr/bin/make -f nbproject/Makefile-linux_amd64_devel.mk dist/linux_amd64_devel/GNU-Linux-x86/vpuinputparsertests make[2]: se ingresa al directorio `/home/mineq/NetBeansProjects/InputParserTests' mkdir -p build/linux_amd64_devel/GNU-Linux-x86 rm -f build/linux_amd64_devel/GNU-Linux-x86/tests_main.o.d g++ `llvm-config --cxxflags` `pkg-config --cflags unittest-cpp` `pkg-config --cflags boost-1.43` `pkg-config --cflags boost-coroutines` -c -g -I../InputParser -MMD -MP -MF build/linux_amd64_devel/GNU-Linux-x86/tests_main.o.d -o build/linux_amd64_devel/GNU-Linux-x86/tests_main.o tests_main.cpp from /home/mineq/third_party/boost_1_43_0/boost/spirit/include/phoenix_operator.hpp:11, from ../InputParser/InputGrammar.h:14, from tests_main.cpp:14: /home/mineq/third_party/boost_1_43_0/boost/spirit/home/phoenix/operator/self.hpp: In instantiation of ‘const int boost::phoenix::result_of_assign<MockExpressionNode&, boost::variant<MockExpressionNode, std::basic_string<char, std::char_traits<char>, std::allocator<char> >, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_>&>::size’: In file included from /home/mineq/third_party/boost_1_43_0/boost/spirit/home/phoenix/operator.hpp:16, /home/mineq/third_party/boost_1_43_0/boost/spirit/home/phoenix/operator/self.hpp:27: instantiated from ‘const int boost::phoenix::result_of_assign<MockExpressionNode&, boost::variant<MockExpressionNode, std::basic_string<char, std::char_traits<char>, std::allocator<char> >, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_>&>::index’ /home/mineq/third_party/boost_1_43_0/boost/spirit/home/phoenix/operator/self.hpp:27: instantiated from ‘boost::phoenix::result_of_assign<MockExpressionNode&, boost::variant<MockExpressionNode, std::basic_string<char, std::char_traits<char>, std::allocator<char> >, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_>&>’ /home/mineq/third_party/boost_1_43_0/boost/mpl/eval_if.hpp:38: instantiated from ‘boost::mpl::eval_if<boost::mpl::or_<boost::phoenix::is_actor<MockExpressionNode&>, boost::phoenix::is_actor<boost::variant<MockExpressionNode, std::basic_string<char, std::char_traits<char>, std::allocator<char> >, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_>&>, mpl_::bool_<false>, mpl_::bool_<false>, mpl_::bool_<false> >, boost::phoenix::re_curry<boost::phoenix::assign_eval, MockExpressionNode&, boost::variant<MockExpressionNode, std::basic_string<char, std::char_traits<char>, std::allocator<char> >, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_>&, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_>, boost::phoenix::result_of_assign<MockExpressionNode&, boost::variant<MockExpressionNode, std::basic_string<char, std::char_traits<char>, std::allocator<char> >, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_>&> >’ /home/mineq/third_party/boost_1_43_0/boost/spirit/home/phoenix/operator/self.hpp:69: instantiated from ‘boost::phoenix::assign_eval::result<boost::phoenix::basic_environment<boost::fusion::vector1<boost::variant<MockExpressionNode, std::basic_string<char, std::char_traits<char>, std::allocator<char> >, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_>&>, boost::spirit::context<boost::fusion::cons<MockExpressionNode&, boost::fusion::nil>, boost::fusion::vector0<void> >, bool, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_>, boost::spirit::attribute<0>, boost::spirit::argument<0> >’ /home/mineq/third_party/boost_1_43_0/boost/spirit/home/phoenix/core/detail/composite_eval.hpp:89: instantiated from ‘boost::phoenix::detail::composite_eval<2>::result<boost::phoenix::composite<boost::phoenix::assign_eval, boost::fusion::vector<boost::spirit::attribute<0>, boost::spirit::argument<0>, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_> >, boost::phoenix::basic_environment<boost::fusion::vector1<boost::variant<MockExpressionNode, std::basic_string<char, std::char_traits<char>, std::allocator<char> >, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_>&>, boost::spirit::context<boost::fusion::cons<MockExpressionNode&, boost::fusion::nil>, boost::fusion::vector0<void> >, bool, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_> >’ /home/mineq/third_party/boost_1_43_0/boost/spirit/home/phoenix/core/composite.hpp:61: instantiated from ‘boost::phoenix::composite<boost::phoenix::assign_eval, boost::fusion::vector<boost::spirit::attribute<0>, boost::spirit::argument<0>, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_> >::result<boost::phoenix::basic_environment<boost::fusion::vector1<boost::variant<MockExpressionNode, std::basic_string<char, std::char_traits<char>, std::allocator<char> >, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_>&>, boost::spirit::context<boost::fusion::cons<MockExpressionNode&, boost::fusion::nil>, boost::fusion::vector0<void> >, bool, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_> >’ /home/mineq/third_party/boost_1_43_0/boost/spirit/home/phoenix/core/actor.hpp:56: instantiated from ‘boost::phoenix::eval_result<boost::phoenix::composite<boost::phoenix::assign_eval, boost::fusion::vector<boost::spirit::attribute<0>, boost::spirit::argument<0>, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_> >, boost::phoenix::basic_environment<boost::fusion::vector1<boost::variant<MockExpressionNode, std::basic_string<char, std::char_traits<char>, std::allocator<char> >, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_>&>, boost::spirit::context<boost::fusion::cons<MockExpressionNode&, boost::fusion::nil>, boost::fusion::vector0<void> >, bool, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_> >’ /home/mineq/third_party/boost_1_43_0/boost/spirit/home/phoenix/core/actor.hpp:65: instantiated from ‘boost::phoenix::actor<boost::phoenix::composite<boost::phoenix::assign_eval, boost::fusion::vector<boost::spirit::attribute<0>, boost::spirit::argument<0>, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_> > >::result<boost::phoenix::actor<boost::phoenix::composite<boost::phoenix::assign_eval, boost::fusion::vector<boost::spirit::attribute<0>, boost::spirit::argument<0>, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_> > >(boost::fusion::vector1<boost::variant<MockExpressionNode, std::basic_string<char, std::char_traits<char>, std::allocator<char> >, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_>&>&, boost::spirit::context<boost::fusion::cons<MockExpressionNode&, boost::fusion::nil>, boost::fusion::vector0<void> >&, bool&)>’ /home/mineq/third_party/boost_1_43_0/boost/spirit/home/support/action_dispatch.hpp:44: instantiated from ‘bool boost::spirit::traits::action_dispatch<Component>::operator()(const boost::phoenix::actor<Eval>&, Attribute&, Context&) [with Eval = boost::phoenix::composite<boost::phoenix::assign_eval, boost::fusion::vector<boost::spirit::attribute<0>, boost::spirit::argument<0>, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_> >, Attribute = boost::variant<MockExpressionNode, std::basic_string<char, std::char_traits<char>, std::allocator<char> >, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_, boost::detail::variant::void_>, Context = boost::spirit::context<boost::fusion::cons<MockExpressionNode&, boost::fusion::nil>, boost::fusion::vector0<void> >, Component = boost::spirit::qi::alternative<boost::fusion::cons<boost::spirit::qi::reference<const boost::spirit::qi::rule<__gnu_cxx::__normal_iterator<const char*, std::basic_string<char, std::char_traits<char>, std::allocator<char> > >, MockExpressionNode(), boost::proto::exprns_::expr<boost::proto::tag::terminal, boost::proto::argsns_::term<boost::spirit::tag::char_code<boost::spirit::tag::space, boost::spirit::char_encoding::ascii> >, 0l>, boost::fusion::unused_type, boost::fusion::unused_type> >, boost::fusion::cons<boost::spirit::qi::reference<const boost::spirit::qi::rule<__gnu_cxx::__normal_iterator<const char*, std::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::string(), boost::proto::exprns_::expr<boost::proto::tag::terminal, boost::proto::argsns_::term<boost::spirit::tag::char_code<boost::spirit::tag::space, boost::spirit::char_encoding::ascii> >, 0l>, boost::fusion::unused_type, boost::fusion::unused_type> >, boost::fusion::nil> > >]’ /home/mineq/third_party/boost_1_43_0/boost/spirit/home/qi/action/action.hpp:62: instantiated from ‘bool boost::spirit::qi::action<Subject, Action>::parse(Iterator&, const Iterator&, Context&, const Skipper&, Attribute&) const [with Iterator = __gnu_cxx::__normal_iterator<const char*, std::basic_string<char, std::char_traits<char>, std::allocator<char> > >, Context = boost::spirit::context<boost::fusion::cons<MockExpressionNode&, boost::fusion::nil>, boost::fusion::vector0<void> >, Skipper = boost::spirit::qi::char_class<boost::spirit::tag::char_code<boost::spirit::tag::space, boost::spirit::char_encoding::ascii> >, Attribute = const boost::fusion::unused_type, Subject = boost::spirit::qi::alternative<boost::fusion::cons<boost::spirit::qi::reference<const boost::spirit::qi::rule<__gnu_cxx::__normal_iterator<const char*, std::basic_string<char, std::char_traits<char>, std::allocator<char> > >, MockExpressionNode(), boost::proto::exprns_::expr<boost::proto::tag::terminal, boost::proto::argsns_::term<boost::spirit::tag::char_code<boost::spirit::tag::space, boost::spirit::char_encoding::ascii> >, 0l>, boost::fusion::unused_type, boost::fusion::unused_type> >, boost::fusion::cons<boost::spirit::qi::reference<const boost::spirit::qi::rule<__gnu_cxx::__normal_iterator<const char*, std::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::string(), boost::proto::exprns_::expr<boost::proto::tag::terminal, boost::proto::argsns_::term<boost::spirit::tag::char_code<boost::spirit::tag::space, boost::spirit::char_encoding::ascii> >, 0l>, boost::fusion::unused_type, boost::fusion::unused_type> >, boost::fusion::nil> > >, Action = boost::phoenix::actor<boost::phoenix::composite<boost::phoenix::assign_eval, boost::fusion::vector<boost::spirit::attribute<0>, boost::spirit::argument<0>, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_> > >]’ /home/mineq/third_party/boost_1_43_0/boost/spirit/home/qi/nonterminal/detail/parser_binder.hpp:33: instantiated from ‘bool boost::spirit::qi::detail::parser_binder<Parser, Auto>::call(Iterator&, const Iterator&, Context&, const Skipper&, mpl_::true_) const [with Iterator = __gnu_cxx::__normal_iterator<const char*, std::basic_string<char, std::char_traits<char>, std::allocator<char> > >, Skipper = boost::spirit::qi::char_class<boost::spirit::tag::char_code<boost::spirit::tag::space, boost::spirit::char_encoding::ascii> >, Context = boost::spirit::context<boost::fusion::cons<MockExpressionNode&, boost::fusion::nil>, boost::fusion::vector0<void> >, Parser = boost::spirit::qi::action<boost::spirit::qi::alternative<boost::fusion::cons<boost::spirit::qi::reference<const boost::spirit::qi::rule<__gnu_cxx::__normal_iterator<const char*, std::basic_string<char, std::char_traits<char>, std::allocator<char> > >, MockExpressionNode(), boost::proto::exprns_::expr<boost::proto::tag::terminal, boost::proto::argsns_::term<boost::spirit::tag::char_code<boost::spirit::tag::space, boost::spirit::char_encoding::ascii> >, 0l>, boost::fusion::unused_type, boost::fusion::unused_type> >, boost::fusion::cons<boost::spirit::qi::reference<const boost::spirit::qi::rule<__gnu_cxx::__normal_iterator<const char*, std::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::string(), boost::proto::exprns_::expr<boost::proto::tag::terminal, boost::proto::argsns_::term<boost::spirit::tag::char_code<boost::spirit::tag::space, boost::spirit::char_encoding::ascii> >, 0l>, boost::fusion::unused_type, boost::fusion::unused_type> >, boost::fusion::nil> > >, boost::phoenix::actor<boost::phoenix::composite<boost::phoenix::assign_eval, boost::fusion::vector<boost::spirit::attribute<0>, boost::spirit::argument<0>, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_, boost::fusion::void_> > > >, Auto = mpl_::bool_<false>]’ /home/mineq/third_party/boost_1_43_0/boost/spirit/home/qi/nonterminal/detail/parser_binder.hpp:53: instantiated from ‘bool boost::spirit::qi::detail::parser_binder<Parser, Auto>::operator()(Iterator&, const Iterator&, Context&, const Skipper&) const [with Iterator = __gnu_cxx::__normal_iterator<const char*, std::basic_string<char, std::char_traits<char>, std::allocator<char> > >, Skipper = boost::spirit::qi::char_class<boost::spirit::tag::char_code<boost::spirit::tag::space, boost::spirit::char_encoding::ascii> >, Context = boost::spirit::context<boost::fusion::cons<MockExpressionNode&, boost::fusion::nil>, boost::fusion::vector0<void> >, Parser = boost::spirit::qi::action<boost::spirit::qi::alternative<boost::fusion::cons<boost::spirit::qi::reference<const boost::spirit::qi::rule<__gnu_cxx::__normal_iterator<const char*, std::basic_string<char, std::char_traits<char>, std::allocator<char> > >, MockExpressionNode(), boost::proto::exprns_::expr<boost::proto::tag::terminal, boost::proto::argsns_::term<boost::spirit::tag::char_code<boost::spirit::tag::space, boost::spirit::char_encoding::ascii> >, 0l>, boost::fusion::unused_type, boost::fusion::unused_type> >, boost::fusion::cons<boost::spirit::qi::reference<const boost::spirit::qi::rule<__gnu_cxx::__normal_iterator<const char*, std::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::string(), boost::proto::exprns_::expr<boost::proto::tag::terminal, boost::proto::argsns_::term<boost::spirit::tag::char_code<boost::spirit::tag::space, boost::spirit::char_encoding::ascii> >, 0l>, boost::fusion::unused_type, boost::fusion::unused_type> >, boost::fusion::nil> > >, ... ... more errors but i had to truncate to fit the 30k limit make[2]: *** [build/linux_amd64_devel/GNU-Linux-x86/tests_main.o] Error 1 make[2]: se sale del directorio `/home/mineq/NetBeansProjects/InputParserTests' make[1]: *** [.build-conf] Error 2 make[1]: se sale del directorio `/home/mineq/NetBeansProjects/InputParserTests' make: *** [.build-impl] Error 2 BUILD FAILED (exit value 2, total time: 2m 13s)

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  • How to run a powershell script within a DOS batch file

    - by Don Vince
    How do I have a powershell script embedded within the same file as a DOS batch script? I know this kind of thing is possible in other scenarios: Embedding SQL in a DOS batch script using sqlcmd and a clever arrangements of goto's and comments at the beginning of the file In a *nix environment having a the name of the program you wish to run the script with on the first line of the script commented out e.g. #!/usr/local/bin/python There may not be a way to do this - in which case I will have to call the separate powershell script from the launching DOS script. One possible solution I've considered is to echo out the powershell script, and then run it. A good reason to not do this is that part of the reason to attempt this is to be using the advantages of the powershell environment without the pain of, for example, DOS escape characters I have some unusual constraints and would like to find an elegant solution. I suspect this question may be baiting responses of the variety: "why don't you try and solve this different problem instead." Suffice to say these are my constraints, sorry about that. Any ideas? Is there a suitable combination of clever comments and escape characters that will enable me to achieve this? Some thoughts on how to achieve this: A carat ^ at the end of a line in DOS is a continuation - like an underscore in VB An ampersand & in DOS typically is used to separate commands echo Hello & echo World results in 2 echos on separate lines %0 will give you the script that's currently running So something like this (if I could make it work) would be good: # & call powershell -psconsolefile %0 # & goto :EOF /* From here on in we're running nice juicy powershell code */ Write-Output "Hello World" Except... It doesn't work... because the extension of the file isn't as per powershell's liking: Windows PowerShell console file "insideout.bat" extension is not psc1. Windows PowerShell console file extension must be psc1. DOS isn't really altogether happy with the situation either - although it does stumble on '#' is not recognized as an internal or external command, operable program or batch file.

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  • Python: How to read huge text file into memory

    - by asmaier
    I'm using Python 2.6 on a Mac Mini with 1GB RAM. I want to read in a huge text file $ ls -l links.csv; file links.csv; tail links.csv -rw-r--r-- 1 user user 469904280 30 Nov 22:42 links.csv links.csv: ASCII text, with CRLF line terminators 4757187,59883 4757187,99822 4757187,66546 4757187,638452 4757187,4627959 4757187,312826 4757187,6143 4757187,6141 4757187,3081726 4757187,58197 So each line in the file consists of a tuple of two comma separated integer values. I want to read in the whole file and sort it according to the second column. I know, that I could do the sorting without reading the whole file into memory. But I thought for a file of 500MB I should still be able to do it in memory since I have 1GB available. However when I try to read in the file, Python seems to allocate a lot more memory than is needed by the file on disk. So even with 1GB of RAM I'm not able to read in the 500MB file into memory. My Python code for reading the file and printing some information about the memory consumption is: #!/usr/bin/python # -*- coding: utf-8 -*- import sys infile=open("links.csv", "r") edges=[] count=0 #count the total number of lines in the file for line in infile: count=count+1 total=count print "Total number of lines: ",total infile.seek(0) count=0 for line in infile: edge=tuple(map(int,line.strip().split(","))) edges.append(edge) count=count+1 # for every million lines print memory consumption if count%1000000==0: print "Position: ", edge print "Read ",float(count)/float(total)*100,"%." mem=sys.getsizeof(edges) for edge in edges: mem=mem+sys.getsizeof(edge) for node in edge: mem=mem+sys.getsizeof(node) print "Memory (Bytes): ", mem The output I got was: Total number of lines: 30609720 Position: (9745, 2994) Read 3.26693612356 %. Memory (Bytes): 64348736 Position: (38857, 103574) Read 6.53387224712 %. Memory (Bytes): 128816320 Position: (83609, 63498) Read 9.80080837067 %. Memory (Bytes): 192553000 Position: (139692, 1078610) Read 13.0677444942 %. Memory (Bytes): 257873392 Position: (205067, 153705) Read 16.3346806178 %. Memory (Bytes): 320107588 Position: (283371, 253064) Read 19.6016167413 %. Memory (Bytes): 385448716 Position: (354601, 377328) Read 22.8685528649 %. Memory (Bytes): 448629828 Position: (441109, 3024112) Read 26.1354889885 %. Memory (Bytes): 512208580 Already after reading only 25% of the 500MB file, Python consumes 500MB. So it seem that storing the content of the file as a list of tuples of ints is not very memory efficient. Is there a better way to do it, so that I can read in my 500MB file into my 1GB of memory?

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  • PHP SASL(PECL) sasl_server_init(app) works with CLI but not with ApacheModule

    - by ZokRadonh
    I have written a simple auth script so that Webusers can type in their username and password and my PHP script verifies them by SASL. The SASL Library is initialized by php function sasl_server_init("phpfoo"). So phpfoo.conf in /etc/sasl2/ is used. phpfoo.conf: pwcheck_method: saslauthd mech_list: PLAIN LOGIN log_level: 9 So the SASL library now tries to connect to saslauthd process by socket. saslauthd command line looks like this: /usr/sbin/saslauthd -r -V -a pam -n 5 So saslauthd uses PAM to authenticate. In the php script I have created sasl connection by sasl_server_new("php", null, "myRealm"); The first argument is the servicename. So PAM uses the file /etc/pam.d/php to see for further authentication information. /etc/pam.d/php: auth required pam_mysql.so try_first_pass=0 config_file=/etc/pam.d/mysqlconf.nss account required pam_permit.so session required pam_permit.so mysqlconf.nss has all information that is needed for a useful MySQL Query to user table. All of this works perfectly when I run the script by command line. php ssasl.php But when I call the same script via webbrowser(php apache module) I get an -20 return code (SASL_NOUSER). In /var/log/messages there is May 18 15:27:12 hostname httpd2-prefork: unable to open Berkeley db /etc/sasldb2: No such file or directory I do not have anything with a Berkeley db for authentication with SASL. I think authentication using /etc/sasldb2 is the default setting. In my opinion it does not read my phpfoo.conf file. For some reason the php-apache-module ignores the parameter in sasl_server_init("phpfoo"). My first thought was that there is a permission issue. So back in shell: su -s /bin/bash wwwrun php ssasl.php "Authentication successful". - No file-permission issue. In the source of the sasl-php-extension we can find: PHP_FUNCTION(sasl_server_init) { char *name; int name_len; if (zend_parse_parameters(1 TSRMLS_CC, "s", &name, &name_len) == FAILURE) { return; } if (sasl_server_init(NULL, name) != SASL_OK) { RETURN_FALSE; } RETURN_TRUE; } This is a simple pass through of the string. Are there any differences between the PHP CLI and PHP ApacheModule version that I am not aware of? Anyway, there are some interesting log entries when I run PHP in CLI mode: May 18 15:44:48 hostname php: SQL engine 'mysql' not supported May 18 15:44:48 hostname php: auxpropfunc error no mechanism available May 18 15:44:48 hostname php: _sasl_plugin_load failed on sasl_auxprop_plug_init for plugin: sqlite May 18 15:44:48 hostname php: sql_select option missing May 18 15:44:48 hostname php: auxpropfunc error no mechanism available May 18 15:44:48 hostname php: _sasl_plugin_load failed on sasl_auxprop_plug_init for plugin: sql Those lines are followed by lines of saslauthd and PAM which results in authentication success.(I do not get any of them in ApacheModule mode) Looks like that he is trying auxprop pwcheck before saslauthd. I have no other .conf file in /etc/sasl2. When I change the parameter of sasl_server_init to something other then I get the same error in CLI mode as in ApacheModule mode.

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  • How to override PHP configuration when running in CGI mode

    - by Fitrah M
    There are some tutorials out there telling me how to override PHP configuration when it is running in CGI mode. But I'm still confused because lots of them assume that the server is running on Linux. While I need to do that also in Windows. My hosting is indeed using Linux but my local development computer is using Windows XP with Xampp 1.7.3. So I need to do that in my local computer first, then I want to change the configuration on hosting server. The PHP in my hosting server is already run as CGI while in my local computer still run as Apache module. At this point, the processes that I understand are: Change PHP to work in CGI mode. I did this by commenting these two line in "httpd-xampp.conf": # LoadFile "C:/xampp/php/php5ts.dll" # LoadModule php5_module modules/php5apache2_2.dll Create "cgi-bin" directory in DocumentRoot. My DocumentRoot is in "D:\www\" (I'm using apache with virtual host). So it is now "D:\www\cgi-bin". Change the default "cgi-bin" directory settings from "C:/xampp/cgi-bin/" to "D:\www\cgi-bin": ScriptAlias /cgi-bin/ "D:/www/cgi-bin/" <Directory "D:\www\cgi-bin"> Options MultiViews Indexes SymLinksIfOwnerMatch Includes ExecCGI AllowOverride All Allow from All </Directory> At this point, my PHP is now running as CGI. I checked this with phpinfo(). It tells me that Server API is now CGI/FastCGI. Now I want to override php configuration. I copied 'php.ini' file to "D:\www\cgi-bin" and modify upload_max_filesize setting from 128M to 10M. Create 'php.cgi' file in "D:\www\cgi-bin" and put these code inside the file: #!/bin/sh /usr/local/cpanel/cgi-sys/php5 -c /home/user/public_html/cgi-bin/ That's it. I'm stuck at this point. All of tutorials tell me to create 'php.cgi' file and put shell code inside the file. How to do the 6th step on Windows? I know the next step is to create handler in .htaccess file to load that 'php.cgi'. And also, because I will also need to change PHP configuration on my hosting server (Linux), is the 6th step above right? Some tutorial tells to insert these line instead of above: #!/bin/sh export PHPRC=/site/ini/1 exec /cgi-bin/php5.cgi I'm sorry if my question is not clear. I'm a new member and this is my first question in this site. Thank you.

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  • Importing Conditionally Compiled Functions From a Perl Module

    - by Robert S. Barnes
    I have a set of logging and debugging functions which I want to use across multiple modules / objects. I'd like to be able to turn them on / off globally using a command line switch. The following code does this, however, I would like to be able to omit the package name and keep everything in a single file. This is related to two previous questions I asked, here and here. #! /usr/bin/perl -w use strict; use Getopt::Long; { package LogFuncs; use threads; use Time::HiRes qw( gettimeofday ); # provide tcpdump style time stamp sub _gf_time { my ( $seconds, $microseconds ) = gettimeofday(); my @time = localtime($seconds); return sprintf( "%02d:%02d:%02d.%06ld", $time[2], $time[1], $time[0], $microseconds ); } sub logerr; sub compile { my %params = @_; *logerr = $params{do_logging} ? sub { my $msg = shift; warn _gf_time() . " Thread " . threads->tid() . ": $msg\n"; } : sub { }; } } { package FooObj; sub new { my $class = shift; bless {}, $class; }; sub foo_work { my $self = shift; # do some foo work LogFuncs::logerr($self); } } { package BarObj; sub new { my $class = shift; my $data = { fooObj => FooObj->new() }; bless $data, $class; } sub bar_work { my $self = shift; $self->{fooObj}->foo_work(); LogFuncs::logerr($self); } } my $do_logging = 0; GetOptions( "do_logging" => \$do_logging, ); LogFuncs::compile(do_logging => $do_logging); my $bar = BarObj->new(); LogFuncs::logerr("Created $bar"); $bar->bar_work();

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  • Java web-app debugging not possible due to direct undeploy on debug

    - by Hendrik
    When i try to debug my webapp it starts up the tomcat server and the application, but shuts down the debugger shortly before the app gets usable. I see the debugging toolbar for a second before it vanishes again, though the app keeps running. Tomcat-log: Listening for transport dt_socket at address: 11555 23.03.2010 01:24:35 org.apache.catalina.core.AprLifecycleListener init INFO: The APR based Apache Tomcat Native library which allows optimal performance in production environments was not found on the java.library.path: .:/Library/Java/Extensions:/System/Library/Java/Extensions:/usr/lib/java 23.03.2010 01:24:35 org.apache.coyote.http11.Http11Protocol init INFO: Initializing Coyote HTTP/1.1 on http-8084 23.03.2010 01:24:35 org.apache.catalina.startup.Catalina load INFO: Initialization processed in 847 ms 23.03.2010 01:24:35 org.apache.catalina.core.StandardService start INFO: Starting service Catalina 23.03.2010 01:24:35 org.apache.catalina.core.StandardEngine start INFO: Starting Servlet Engine: Apache Tomcat/6.0.20 log4j:WARN No appenders could be found for logger (org.springframework.web.context.ContextLoader). log4j:WARN Please initialize the log4j system properly. 23.03.2010 01:24:41 org.apache.coyote.http11.Http11Protocol start INFO: Starting Coyote HTTP/1.1 on http-8084 23.03.2010 01:24:41 org.apache.jk.common.ChannelSocket init INFO: JK: ajp13 listening on /0.0.0.0:8009 23.03.2010 01:24:41 org.apache.jk.server.JkMain start INFO: Jk running ID=0 time=0/78 config=null 23.03.2010 01:24:41 org.apache.catalina.startup.Catalina start INFO: Server startup in 5855 ms 23.03.2010 01:24:42 org.apache.catalina.startup.HostConfig checkResources INFO: Undeploying context [] 23.03.2010 01:24:45 org.apache.catalina.core.StandardContext start INFO: Container org.apache.catalina.core.ContainerBase.[Catalina].[localhost].[/] has already been started Debugging log: Attached JPDA debugger to localhost:11555 Checking data source definitions for missing JDBC drivers... Deploying JDBC driver to /Applications/NetBeans/apache-tomcat-6.0.20/lib/mysql-connector-java-5.1.6-bin.jar Stopping Tomcat process... Waiting for Tomcat... Tomcat server stopped. Starting Tomcat process... Waiting for Tomcat... Tomcat server started. Undeploying ... OK - Undeployed application at context path / In-place deployment at /path/to/project/dir/build/web deploy?config=file%3A%2Fvar%2Ffolders%2FZP%2FZPbqxGrbHFaUlXzAfgWV1%2B%2B%2B%2BTQ%2F-Tmp-%2Fcontext734173871283203218.xml&path=/ OK - Deployed application at context path / start?path=/ Start is in progress... OK - Started application at context path / debug-display-browser: Browsing: http://localhost:8084/ connect-client-debugger: BUILD SUCCESSFUL (total time: 18 seconds) System is Netbeans 6.8 on MacOS 10.6.2. Thank you very much, guys!

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  • Autoconf (newbie) -- building with static library

    - by EB
    I am trying to migrate from manual build to autoconf, which is working very nicely so far. But I have one static library that I can't figure out how to integrate. That library will NOT be located in the usual library locations - the location of the binary (.a file) and header (.h file) will be given as a configure argument. (Notably, even if I move the .a file to /usr/lib or anywhere else I can think of, it still won't work.) Manual compilation is working with these: gcc ... -I/path/to/header/file/directory /full/path/to/the/.a/file/itself (Uh, I actually don't understand why the .a file is referenced directly, not with -L or anything. Yes, I have a half-baked understanding of building C programs.) I can use the configure argument to successfully find the header (.h file) using AC_CHECK_HEADER. Inside the AC_CHECK_HEADER I then add the location to CPFLAGS and the #include of the header file in the actual C code picks it up nicely. Given a configure argument that has been put into $location and the name of the needed files are myprog.h and myprog.a (which are both in the same directory), here is what works so far: AC_CHECK_HEADER([$location/myprog.h], [AC_DEFINE([HAVE_MYPROG_H], [1], [found myprog.h]) CFLAGS="$CFLAGS -I$location"]) Where I run into difficulties is getting the binary (.a file) linked in. No matter what I try, I always get an error about undefined references to the function calls for that library. I'm pretty sure it's a linkage issue, because I can fuss with the C code and make an intentional error in the function calls to that library which produces earlier errors that indicate that the function prototypes have been loaded and used to compile. I tried adding the location that contains the .a file to LDFLAGS and then doing a AC_CHECK_LIB but it is not found. Maybe my syntax is wrong, or maybe I'm missing something more fundamental, which would not be surprising since I'm a newbie and don't really know what I'm doing. Here is what I have tried: AC_CHECK_HEADER([$location/myprog.h], [AC_DEFINE([HAVE_MYPROG_H], [1], [found myprog.h]) CFLAGS="$CFLAGS -I$location"; LDFLAGS="$LDFLAGS -L$location"; AC_CHECK_LIB(myprog)]) No dice. AC_CHECK_LIB is looking for -lmyprog I guess (or libmyprog?) so I'm not sure if that's a problem, so I tried this, too (omit AC_CHECK_LIB and include the .a directly in LDFLAGS), without luck: AC_CHECK_HEADER([$location/myprog.h], [AC_DEFINE([HAVE_MYPROG_H], [1], [found myprog.h]) CFLAGS="$CFLAGS -I$location"; LDFLAGS="$LDFLAGS -L$location/myprog.a"]) To emulate the manual compilation, I tried removing the -L but that doesn't help: AC_CHECK_HEADER([$location/myprog.h], [AC_DEFINE([HAVE_MYPROG_H], [1], [found myprog.h]) CFLAGS="$CFLAGS -I$location"; LDFLAGS="$LDFLAGS $location/myprog.a"]) I tried other combinations and permutations, but I think I might be missing something more fundamental....

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  • Using scipy.interpolate.splrep function

    - by Koustav Ghosal
    I am trying to fit a cubic spline to a given set of points. My points are not ordered. I CANNOT sort or reorder the points, since I need that information. But since the function scipy.interpolate.splrep works only on non-duplicate and monotonically increasing points I have defined a function that maps the x-coordinates to a monotonically increasing space. My old points are: xpoints=[4913.0, 4912.0, 4914.0, 4913.0, 4913.0, 4913.0, 4914.0, 4915.0, 4918.0, 4921.0, 4925.0, 4932.0, 4938.0, 4945.0, 4950.0, 4954.0, 4955.0, 4957.0, 4956.0, 4953.0, 4949.0, 4943.0, 4933.0, 4921.0, 4911.0, 4898.0, 4886.0, 4874.0, 4865.0, 4858.0, 4853.0, 4849.0, 4848.0, 4849.0, 4851.0, 4858.0, 4864.0, 4869.0, 4877.0, 4884.0, 4893.0, 4903.0, 4913.0, 4923.0, 4935.0, 4947.0, 4959.0, 4970.0, 4981.0, 4991.0, 5000.0, 5005.0, 5010.0, 5015.0, 5019.0, 5020.0, 5021.0, 5023.0, 5025.0, 5027.0, 5027.0, 5028.0, 5028.0, 5030.0, 5031.0, 5033.0, 5035.0, 5037.0, 5040.0, 5043.0] ypoints=[10557.0, 10563.0, 10567.0, 10571.0, 10575.0, 10577.0, 10578.0, 10581.0, 10582.0, 10582.0, 10582.0, 10581.0, 10578.0, 10576.0, 10572.0, 10567.0, 10560.0, 10550.0, 10541.0, 10531.0, 10520.0, 10511.0, 10503.0, 10496.0, 10490.0, 10487.0, 10488.0, 10488.0, 10490.0, 10495.0, 10504.0, 10513.0, 10523.0, 10533.0, 10542.0, 10550.0, 10556.0, 10559.0, 10560.0, 10559.0, 10555.0, 10550.0, 10543.0, 10533.0, 10522.0, 10514.0, 10505.0, 10496.0, 10490.0, 10486.0, 10482.0, 10481.0, 10482.0, 10486.0, 10491.0, 10497.0, 10506.0, 10516.0, 10524.0, 10534.0, 10544.0, 10552.0, 10558.0, 10564.0, 10569.0, 10573.0, 10576.0, 10578.0, 10581.0, 10582.0] Plots: The code for the mapping function and interpolation is: xnew=[] ynew=ypoints for c3,i in enumerate(xpoints): if np.isfinite(np.log(i*pow(2,c3))): xnew.append(np.log(i*pow(2,c3))) else: if c==0: xnew.append(np.random.random_sample()) else: xnew.append(xnew[c3-1]+np.random.random_sample()) xnew=np.asarray(xnew) ynew=np.asarray(ynew) constant1=10.0 nknots=len(xnew)/constant1 idx_knots = (np.arange(1,len(xnew)-1,(len(xnew)-2)/np.double(nknots))).astype('int') knots = [xnew[i] for i in idx_knots] knots = np.asarray(knots) int_range=np.linspace(min(xnew),max(xnew),len(xnew)) tck = interpolate.splrep(xnew,ynew,k=3,task=-1,t=knots) y1= interpolate.splev(int_range,tck,der=0) The code is throwing an error at the function interpolate.splrep() for some set of points like the above one. The error is: File "/home/neeraj/Desktop/koustav/res/BOS5/fit_spline3.py", line 58, in save_spline_f tck = interpolate.splrep(xnew,ynew,k=3,task=-1,t=knots) File "/usr/lib/python2.7/dist-packages/scipy/interpolate/fitpack.py", line 465, in splrep raise _iermessier(_iermess[ier][0]) ValueError: Error on input data But for other set of points it works fine. For example for the following set of points. xpoints=[1629.0, 1629.0, 1629.0, 1629.0, 1629.0, 1629.0, 1629.0, 1629.0, 1629.0, 1629.0, 1629.0, 1629.0, 1629.0, 1629.0, 1629.0, 1629.0, 1630.0, 1630.0, 1630.0, 1631.0, 1631.0, 1631.0, 1631.0, 1630.0, 1629.0, 1629.0, 1629.0, 1628.0, 1627.0, 1627.0, 1625.0, 1624.0, 1624.0, 1623.0, 1620.0, 1618.0, 1617.0, 1616.0, 1615.0, 1614.0, 1614.0, 1612.0, 1612.0, 1612.0, 1611.0, 1610.0, 1609.0, 1608.0, 1607.0, 1607.0, 1603.0, 1602.0, 1602.0, 1601.0, 1601.0, 1600.0, 1599.0, 1598.0] ypoints=[10570.0, 10572.0, 10572.0, 10573.0, 10572.0, 10572.0, 10571.0, 10570.0, 10569.0, 10565.0, 10564.0, 10563.0, 10562.0, 10560.0, 10558.0, 10556.0, 10554.0, 10551.0, 10548.0, 10547.0, 10544.0, 10542.0, 10541.0, 10538.0, 10534.0, 10532.0, 10531.0, 10528.0, 10525.0, 10522.0, 10519.0, 10517.0, 10516.0, 10512.0, 10509.0, 10509.0, 10507.0, 10504.0, 10502.0, 10500.0, 10501.0, 10499.0, 10498.0, 10496.0, 10491.0, 10492.0, 10488.0, 10488.0, 10488.0, 10486.0, 10486.0, 10485.0, 10485.0, 10486.0, 10483.0, 10483.0, 10482.0, 10480.0] Plots: Can anybody suggest what's happening ?? Thanks in advance......

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  • How can I close a Window using the OS-X ScriptingBridge framework, from Perl?

    - by Gavin Brock
    Problem... Since MacPerl is no longer supported on 64bit perl, I am trying alternative frameworks to control Terminal.app. I am trying the ScriptingBridge, but have run into a problem passing an enumerated string to the closeSaving method using the PerlObjCBridge. I want to call: typedef enum { TerminalSaveOptionsYes = 'yes ' /* Save the file. */, TerminalSaveOptionsNo = 'no ' /* Do not save the file. */, TerminalSaveOptionsAsk = 'ask ' /* Ask the user whether or not to save the file. */ } TerminalSaveOptions; - (void) closeSaving:(TerminalSaveOptions)saving savingIn:(NSURL *)savingIn; // Close a document. Attempted Solution... I have tried: #!/usr/bin/perl use strict; use warnings; use Foundation; # Load the ScriptingBridge framework NSBundle->bundleWithPath_('/System/Library/Frameworks/ScriptingBridge.framework')->load; @SBApplication::ISA = qw(PerlObjCBridge); # Set up scripting bridge for Terminal.app my $terminal = SBApplication->applicationWithBundleIdentifier_("com.apple.terminal"); # Open a new window, get back the tab my $tab = $terminal->doScript_in_('exec sleep 60', undef); warn "Opened tty: ".$tab->tty->UTF8String; # Yes, it is a tab # Now try to close it # Simple idea eval { $tab->closeSaving_savingIn_('no ', undef) }; warn $@ if $@; # Try passing a string ref my $no = 'no '; eval { $tab->closeSaving_savingIn_(\$no, undef) }; warn $@ if $@; # Ok - get a pointer to the string my $pointer = pack("P4", $no); eval { $tab->closeSaving_savingIn_($pointer, undef) }; warn $@ if $@; eval { $tab->closeSaving_savingIn_(\$pointer, undef) }; warn $@ if $@; # Try a pointer decodes as an int, like PerlObjCBridge uses my $int_pointer = unpack("L!", $pointer); eval { $tab->closeSaving_savingIn_($int_pointer, undef) }; warn $@ if $@; eval { $tab->closeSaving_savingIn_(\$int_pointer, undef) }; warn $@ if $@; # Aaarrgghhhh.... As you can see, all my guesses at how to pass the enumerated string fail. Before you flame me... I know that I could use another language (ruby, python, cocoa) to do this but that would require translating the rest of the code. I might be able to use CamelBones, but I don't want to assume my users have it installed. I could also use the NSAppleScript framework (assuming I went to the trouble of finding the Tab and Window IDs) but it seems odd to have to resort to it for just this one call.

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  • How can I handle UTF-8 while posting to a vBulletin board with WWW::Mechanize?

    - by MrMirror
    I have a problem with some automating posting to bulletin board... If I send the posting form to the vBulletin board, I get corrupted entities. Feel free to copy-paste the script and try it... It looks like the board's expecting some decoded utf8, but if I send the message decoded the entities are still wrong. #!/usr/bin/perl use strict; use warnings; use WWW::Mechanize; use Digest::MD5 qw(md5_hex); my $mech = WWW::Mechanize->new(); my $base_url = 'http://www.boerse.bz/'; my $username = 'MrMirror'; my $password = 'test'; $mech->get($base_url); print "Login\n"; $mech->form_number(1); $mech->field('vb_login_username' => $username); $mech->field('vb_login_password' => $password); $mech->field('vb_login_md5password' => md5_hex($password)); $mech->field('vb_login_md5password_utf' => md5_hex($password)); $mech->submit(); unless ($mech->content() =~ m!Weiterleitung!gi) { print "No Rediction!\n"; exit; } print "Redict\n"; $mech->get($base_url); unless ($mech->content() =~ m!Logout!gi) { print "Login Failed!\n"; exit; } $mech->get($base_url .'/newthread.php?do=newthread&f=173'); $mech->form_number(3); $mech->field('subject' => 'MrMirror makes some testing ä ö ü ß'); $mech->field('message' => "ä ö ü ß"); ### everything allright here $mech->dump_forms(); ### preview submit, don't wanna spam around ;) $mech->click('preview'); print "\n\n\n---------------------------------------------------------------------\n\n\n"; ### same form, wrong entities :( $mech->dump_forms();

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  • Piping input to a Java app with Perl

    - by user319479
    I need to write a Perl script that pipes input into a Java program. This is related to this, but that didn't help me. My issue is that the Java app doesn't get the print statements until I close the handle. What I found online was that $| needs to be set to something greater than 0, in which case newline characters will flush the buffer. This still doesn't work. This is the script: #! /usr/bin/perl -w use strict; use File::Basename; $|=1; open(TP, "| java -jar test.jar") or die "fail"; sleep(2); print TP "this is test 1\n"; print TP "this is test 2\n"; print "tests printed, waiting 5s\n"; sleep(5); print "wait over. closing handle...\n"; close TP; print "closed.\n"; print "sleeping for 5s...\n"; sleep(5); print "script finished!\n"; exit And here is a sample Java app: import java.util.Scanner; public class test{ public static void main( String[] args ){ Scanner sc = new Scanner( System.in ); int crashcount = 0; while( true ){ try{ String input = sc.nextLine(); System.out.println( ":: INPUT: " + input ); if( "bananas".equals(input) ){ break; } } catch( Exception e ){ System.out.println( ":: EXCEPTION: " + e.toString() ); crashcount++; if( crashcount == 5 ){ System.out.println( ":: Looks like stdin is broke" ); break; } } } System.out.println( ":: IT'S OVER!" ); return; } } The Java app should respond to receiving the test prints immediately, but it doesn't until the close statement in the Perl script. What am I doing wrong? Note: the fix can only be in the Perl script. The Java app can't be changed. Also, File::Basename is there because I'm using it in the real script.

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  • Universal iPad App rejected because of launch crash that I can't reproduce

    - by Enrique R.
    Hello everyone, I'm very frustrated with this problem. After one week of waiting my universal iPad app has been rejected because "is crashing on launch on iPad running iPhone OS 3.2 and iPhone 3GS running iPhone OS 3.1.3 and Mac OS X 10.6.2." Unfortunately I can't replicate the problem, I've tested in debug and release modes and the app works just fine. I even created an ad-hoc configuration and test it in other devices and everything works fine. I should clarify that this is an update to a current iPhone application and I'm using the same distribution profile as the original iPhone app. Also, I checked everything before building the universal app following this entry: http://iphonedevelopment.blogspot.com/2010/04/converting-iphone-apps-to-universal.html Here are the crash logs that Apple sent me: Incident Identifier: 3E0D4A3B-2896-444D-BCBE-6C0CA1A66A90 CrashReporter Key: 18b5124ea5f657227c5f202a27ed707379b3e2e7 Process: Transfer [982] Path: /var/mobile/Applications/E9062465-7EA6-424C-9C61-D9DBCC7C915A/Transfer.app/Transfer Identifier: Transfer Version: ??? (???) Code Type: ARM (Native) Parent Process: launchd [1] Date/Time: 2010-05-04 15:35:57.399 -0700 OS Version: iPhone OS 3.1.3 (7E18) Report Version: 104 Exception Type: EXC_BAD_INSTRUCTION (SIGILL) Exception Codes: 0x00000001, 0x3eaa2188 Highlighted Thread: 0 Backtrace not available Unknown thread crashed with ARM Thread State: r0: 0x00002f90 r1: 0x00000000 r2: 0x385242d8 r3: 0x0000010d r4: 0x00000000 r5: 0x00000000 r6: 0x00000000 r7: 0x00000000 r8: 0x2ffffba0 r9: 0x2fffef90 r10: 0x00000000 r11: 0x00000000 ip: 0x0000000c sp: 0x2ffffba4 lr: 0x2fe08727 pc: 0x00002f94 cpsr: 0x40000010 Binary Images: 0x1000 - 0x25fff +Transfer armv7 /var/mobile/Applications/E9062465-7EA6-424C-9C61-D9DBCC7C915A/Transfer.app/Transfer 0x2fe00000 - 0x2fe24fff dyld armv7 /usr/lib/dyld .... And the one for the iPad: Incident Identifier: 3B170A28-C8E2-4018-8166-E69432A65070 CrashReporter Key: 4a0194e3f60559127faef2b014df605e4c47b981 Hardware Model: iPad1,1 Process: Transfer [533] Path: /var/mobile/Applications/400EE394-7BEE-45CA-942D-DBDC106360FF/Transfer.app/Transfer Identifier: Transfer Version: ??? (???) Code Type: ARM (Native) Parent Process: launchd [1] Date/Time: 2010-05-04 15:37:17.505 -0700 OS Version: iPhone OS 3.2 (7B367) Report Version: 104 Exception Type: 00000020 Exception Codes: 0x8badf00d Highlighted Thread: 0 Application Specific Information: com.erclab.iphone.photodownload failed to launch in time elapsed total CPU time (seconds): 1.150 (user 0.560, system 0.590), 6% CPU elapsed application CPU time (seconds): 0.150, 1% CPU Thread 0: 0 libobjc.A.dylib 0x33561996 0x33560000 + 6550 1 libobjc.A.dylib 0x33564986 0x33560000 + 18822 2 libobjc.A.dylib 0x33564cb2 0x33560000 + 19634 ... The app does not do anything other than loading a local HTML into a web view after the app it's launched so I don't understand why it says "failed to launch in time" Any help will be very much appreciated.

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  • Perl coding to PHP coding conversion

    - by Haskella
    Hi, I am trying to convert some Perl into PHP using this guideline: http://www.cs.wcupa.edu/~rkline/perl2php/#basedir Basically I know next to nothing about these two languages. Please give me some simple English explanation of what each line does, I'll be more than happy. Thanks for reading :D Perl CGI program: #!/usr/bin/perl -T use strict; use warnings; use CGI (); my %fruit_codes = ( apple => '2321.html', banana => '1234.html', coconut => '8889.html', ); my $c = CGI->new; my $fruit_parameter = $c->param('fruit_name'); my $iframe_document; if (defined $fruit_parameter and exists $fruit_codes{$fruit_parameter}) { $iframe_document = $fruit_codes{$fruit_parameter}; } else { $iframe_document = 'sorry-no-such-fruit.html'; } $c->header('application/xhtml+xml'); print <<"END_OF_HTML"; <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd"> <html xmlns="http://www.w3.org/1999/xhtml"> <head> <title>Fruits</title> </head> <body> <form action="fruits.cgi"> <fieldset> <label for="fruit">Name of the fruit:</label> <input id="fruit" name="fruit_name" type="text" /> <input type="submit" /> </fieldset> </form> <iframe src="$iframe_document"> <a href="$iframe_document">resulting fruit</a> </iframe> </body> </html> END_OF_HTML 1;

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  • Executing procedural queries in perl

    - by KalpaG
    I have a query like this set @valid_total:=0; set @invalid_total:=0; select week as weekno, measured_week,project_id as project, role_category_id as role_category, valid_count,valid_tickets, (@valid_total := @valid_total + valid_count) as valid_total, invalid_count,invalid_tickets, (@invalid_total := @invalid_total + invalid_count) as invalid_total from metric_fault_bug_project where measured_week = yearweek(curdate()) and role_category_id = 1 and project_id = 11; it executes fine in heidi (MySQL client) but when it comes to perl, it gives me this error DBD::mysql::st execute failed: You have an error in your SQL syntax; check the m anual that corresponds to your MySQL server version for the right syntax to use near ':=0; set :=0; select week as weekno, measured_week,project_id as project' at line 1 at D:\Mx\scripts\test.pl line 35. Can't execute SQL statement: You have an error in your SQL syntax; check the man ual that corresponds to your MySQL server version for the right syntax to use ne ar ':=0; set :=0; select week as weekno, measured_week,project_id as project' at line 1 The problem seem to be in the set @valid_total := 0; line. I am fairly new to Perl. Can anyone help? this is the complete perl code #!/usr/bin/perl #use lib '/x01/home/kalpag/libs'; use DBI; use strict; use warnings; my $sid = 'issues'; my $user = 'root'; my $passwd = 'kalpa'; my $connection = "DBI:mysql:database=$sid;host=localhost"; my $dbhh = DBI->connect( $connection, $user, $passwd) || die "Database connection not made: $DBI::errstr"; my $sql_query = 'set @valid_total:=0; set @invalid_total:=0; select week as weekno, measured_week,project_id, role_category_id as role_category, valid_count,valid_tickets, (@valid_total := @valid_total + valid_count) as valid_total, invalid_count,invalid_tickets, (@invalid_total := @invalid_total + invalid_count) as invalid_total from metric_fault_bug_project where measured_week = yearweek(curdate()) and role_category_id = 1 and project_id = 11'; my $sth = $dbhh->prepare($sql_query) or die "Can't prepare SQL statement: $DBI::errstr\n"; $sth->execute() or die "Can't execute SQL statement: $DBI::errstr\n"; while ( my @memory = $sth->fetchrow() ) { print "@memory \n"; }

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  • How to Symbolicate iPhone App Crash Reports ?

    - by bluej3
    Hello~ I retrieved the crash reports from iTunes Connect. I referenced this site. http://webcache.googleusercontent.com/search?q=cache:MmxwdXObZLMJ:www.anoshkin.net/blog/2008/09/09/iphone-crash-logs/+iphone+crash+debig&cd=2&hl=en&ct=clnk I tried.... $ symbolicatecrash report.crash MobileLines.app.dSYM report-with-symbols.crash Error in symbol file for /Developer/Platforms/iPhoneOS.platform/DeviceSupport/3.1.2 (7D11)/Symbols/System/Library/Frameworks/IOKit.framework/Versions/A/IOKit Error in symbol file for /Developer/Platforms/iPhoneOS.platform/DeviceSupport/3.1.2 (7D11)/Symbols/System/Library/PrivateFrameworks/WebCore.framework/WebCore Error in symbol file for /Developer/Platforms/iPhoneOS.platform/DeviceSupport/3.1.2 (7D11)/Symbols/System/Library/Frameworks/Foundation.framework/Foundation Error in symbol file for /Developer/Platforms/iPhoneOS.platform/DeviceSupport/3.1.2 (7D11)/Symbols/usr/lib/libSystem.B.dylib Error in symbol file for /Developer/Platforms/iPhoneOS.platform/DeviceSupport/3.1.2 (7D11)/Symbols/System/Library/PrivateFrameworks/GraphicsServices.framework/GraphicsServices Error in symbol file for /Developer/Platforms/iPhoneOS.platform/DeviceSupport/3.1.2 (7D11)/Symbols/System/Library/Frameworks/UIKit.framework/UIKit Error in symbol file for /Developer/Platforms/iPhoneOS.platform/DeviceSupport/3.1.2 (7D11)/Symbols/System/Library/Frameworks/OpenGLES.framework/MBXGLEngine.bundle/MBXGLEngine Error in symbol file for /Developer/Platforms/iPhoneOS.platform/DeviceSupport/3.1.2 (7D11)/Symbols/System/Library/Frameworks/AudioToolbox.framework/AudioToolbox Error in symbol file for /Developer/Platforms/iPhoneOS.platform/DeviceSupport/3.1.2 (7D11)/Symbols/System/Library/Frameworks/CoreFoundation.framework/CoreFoundation BUT... I didn't result. (find error message) - This directory is located "bulid/Distribution-iphones" - "MYGAME.app" file and "MYGAME.app.dSYM" file is located in same directory. How can i do solve this problem. ? Please help me :) * Crash log (carsh at thread 2 ) Incident Identifier: 95230C2E-CD83-46BF-8DAE-F38BCD46B910 Process: MYGAMELite [303] Path: /var/mobile/Applications/4FB79BEC-2BF0-438B-82A8-C302CD52A85C/MYGAMELite.app/MYGAMELite Identifier: MYGAMELite Version: ??? (???) Code Type: ARM (Native) Parent Process: launchd [1] Date/Time: 2010-06-03 11:43:52.875 +0800 OS Version: iPhone OS 3.1.2 (7D11) Report Version: 104 Exception Type: EXC_BAD_ACCESS (SIGSEGV) Exception Codes: KERN_INVALID_ADDRESS at 0x03e3a002 Crashed Thread: 2 Thread 2 Crashed: 0 AudioToolbox 0x330d708c AU3DMixerEmbedded::SumInput16(unsigned long, AudioBufferList const&, AudioBufferList const&, unsigned long, float, unsigned long) 1 AudioToolbox 0x330d89a0 AU3DMixerEmbedded::Render(unsigned long&, AudioTimeStamp const&, unsigned long) 2 AudioToolbox 0x32fe6bb8 AUBase::DoRender(unsigned long&, AudioTimeStamp const&, unsigned long, unsigned long, AudioBufferList&) 3 AudioToolbox 0x32fe6504 Render 4 AudioToolbox 0x330160b8 AUInputElement::PullInput(unsigned long&, AudioTimeStamp const&, unsigned long, unsigned long) 5 AudioToolbox 0x33023fa8 AUInputFormatConverter2::InputProc(OpaqueAudioConverter*, unsigned long*, AudioBufferList*, AudioStreamPacketDescription*, void) 6 AudioToolbox 0x32fe4b60 AudioConverterChain::CallInputProc(unsigned long) 7 AudioToolbox 0x32fe4a5c AudioConverterChain::FillBufferFromInputProc(unsigned long*, CABufferList*) 8 AudioToolbox 0x32fe4790 BufferedAudioConverter::GetInputBytes(unsigned long, unsigned long&, CABufferList const*&) 9 AudioToolbox 0x33023e30 CBRConverter::RenderOutput(CABufferList*, unsigned long, unsigned long&, AudioStreamPacketDescription*) 10 AudioToolbox 0x32fe4284 BufferedAudioConverter::FillBuffer(unsigned long&, AudioBufferList&, AudioStreamPacketDescription*) 11 AudioToolbox 0x32fe44a4 AudioConverterChain::RenderOutput(CABufferList*, unsigned long, unsigned long&, AudioStreamPacketDescription*) 12 AudioToolbox 0x32fe4284 BufferedAudioConverter::FillBuffer(unsigned long&, AudioBufferList&, AudioStreamPacketDescription*) 13 AudioToolbox 0x32fe3f10 AudioConverterFillComplexBuffer 14 AudioToolbox 0x33023844 AUConverterBase::RenderBus(unsigned long&, AudioTimeStamp const&, unsigned long, unsigned long) 15 AudioToolbox 0x330ce928 AURemoteIO::RenderBus(unsigned long&, AudioTimeStamp const&, unsigned long, unsigned long) 16 AudioToolbox 0x32fe6bb8 AUBase::DoRender(unsigned long&, AudioTimeStamp const&, unsigned long, unsigned long, AudioBufferList&) 17 AudioToolbox 0x330cf308 AURemoteIO::PerformIO(int, unsigned int, unsigned int, AQTimeStamp const&, AQTimeStamp const&) 18 AudioToolbox 0x330cf4cc AURIOCallbackReceiver_PerformIOSync 19 AudioToolbox 0x330c76fc _XPerformIOSync 20 AudioToolbox 0x330181d8 mshMIGPerform 21 AudioToolbox 0x3309cec8 MSHMIGDispatchMessage 22 AudioToolbox 0x330d48d4 AURemoteIO::IOThread::Entry(void*) 23 AudioToolbox 0x32fc9f20 CAPThread::Entry(CAPThread*) 24 libSystem.B.dylib 0x30b5b7b0 _pthread_body

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  • SSH login with expect(1). How to exit expect and remain in SSH?

    - by Koroviev
    So I wanted to automate my SSH logins. The host I'm with doesn't allow key authentication on this server, so I had to be more inventive. I don't know much about shell scripting, but some research showed me the command 'expect' and some scripts using it for exactly this purpose. I set up a script and ran it, it worked perfectly to login. #!/usr/bin/env expect -f set password "my_password" match_max 1000 spawn ssh -p 2222 "my_username"@11.22.11.22 expect "*?assword:*" send -- "$password\r" send -- "\r" expect eof Initially, it runs as it should. Last login: Wed May 12 21:07:52 on ttys002 esther:~ user$ expect expect-test.exp spawn ssh -p 2222 [email protected] [email protected]'s password: Last login: Wed May 12 15:44:43 2010 from 20.10.20.10 -jailshell-3.2$ But that's where the success ends. Commands do not work, but hitting enter just makes a new line. Arrow keys and other non-alphanumeric keys produce symbols like '^[[C', '^[[A', '^[OQ' etc.[1] No other prompt appears except the two initially created by the expect script. Any ignored commands will be executed by my local shell once expect times out. An example: -jailshell-3.2$ whoami ls pwd hostname (...time passes, expect times out...) esther:~ user$ whoami user esther:~ ciaran$ ls Books Documents Movies Public Code Downloads Music Sites Desktop Library Pictures expect-test.exp esther:~ ciaran$ pwd /Users/ciaran esther:~ ciaran$ hostname esther.local As I said, I have no shell scripting experience, but I think it's being caused because I'm still "inside of" expect, but not "inside of" SSH. Is there any way to terminate expect once I've logged in, and have it hand over the SSH session to me? I've tried commands like 'close' and 'exit', after " send -- "\r" ". Yeah, they do what I want and expect dies, but it vindictively takes the SSH session down with it, leaving me back where I started. What I really need is for expect to do its job and terminate, leaving the SSH session back in my hands as if I did it manually. All help is appreciated, thanks. [1] I know there's a name for this, but I don't know what it is. And this is one of those frightening things which can't be googled, because the punctuation characters are ignored. As a side question, what's the story here?

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  • Problem in running boost eample blocking_udp_echo_client on MacOSX

    - by n179911
    I am trying to run blocking_udp_echo_client on MacOS X http://www.boost.org/doc/libs/1_35_0/doc/html/boost_asio/example/echo/blocking_udp_echo_client.cpp I run it with argument 'localhost 9000' But the program crashes and this is the line in the source which crashes: `udp::socket s(io_service, udp::endpoint(udp::v4(), 0));' this is the stack trace: #0 0x918c3e42 in __kill #1 0x918c3e34 in kill$UNIX2003 #2 0x9193623a in raise #3 0x91942679 in abort #4 0x940d96f9 in __gnu_debug::_Error_formatter::_M_error #5 0x0000e76e in __gnu_debug::_Safe_iterator::op_base* , __gnu_debug_def::list::op_base*, std::allocator::op_base* ::_Safe_iterator at safe_iterator.h:124 #6 0x00014729 in boost::asio::detail::hash_map::op_base*::bucket_type::bucket_type at hash_map.hpp:277 #7 0x00019e97 in std::_Construct::op_base*::bucket_type, boost::asio::detail::hash_map::op_base*::bucket_type at stl_construct.h:81 #8 0x0001a457 in std::__uninitialized_fill_n_aux::op_base*::bucket_type*, __gnu_norm::vector::op_base*::bucket_type, std::allocator::op_base*::bucket_type , unsigned long, boost::asio::detail::hash_map::op_base*::bucket_type at stl_uninitialized.h:194 #9 0x0001a4e1 in std::uninitialized_fill_n::op_base*::bucket_type*, __gnu_norm::vector::op_base*::bucket_type, std::allocator::op_base*::bucket_type , unsigned long, boost::asio::detail::hash_map::op_base*::bucket_type at stl_uninitialized.h:218 #10 0x0001a509 in std::__uninitialized_fill_n_a::op_base*::bucket_type*, __gnu_norm::vector::op_base*::bucket_type, std::allocator::op_base*::bucket_type , unsigned long, boost::asio::detail::hash_map::op_base*::bucket_type, boost::asio::detail::hash_map::op_base*::bucket_type at stl_uninitialized.h:310 #11 0x0001aa34 in __gnu_norm::vector::op_base*::bucket_type, std::allocator::op_base*::bucket_type ::_M_fill_insert at vector.tcc:365 #12 0x0001acda in __gnu_norm::vector::op_base*::bucket_type, std::allocator::op_base*::bucket_type ::insert at stl_vector.h:658 #13 0x0001ad81 in __gnu_norm::vector::op_base*::bucket_type, std::allocator::op_base*::bucket_type ::resize at stl_vector.h:427 #14 0x0001ae3a in __gnu_debug_def::vector::op_base*::bucket_type, std::allocator::op_base*::bucket_type ::resize at vector:169 #15 0x0001b7be in boost::asio::detail::hash_map::op_base*::rehash at hash_map.hpp:221 #16 0x0001bbeb in boost::asio::detail::hash_map::op_base*::hash_map at hash_map.hpp:67 #17 0x0001bc74 in boost::asio::detail::reactor_op_queue::reactor_op_queue at reactor_op_queue.hpp:42 #18 0x0001bd24 in boost::asio::detail::kqueue_reactor::kqueue_reactor at kqueue_reactor.hpp:86 #19 0x0001c000 in boost::asio::detail::service_registry::use_service at service_registry.hpp:109 #20 0x0001c14d in boost::asio::use_service at io_service.ipp:195 #21 0x0001c26d in boost::asio::detail::reactive_socket_service ::reactive_socket_service at reactive_socket_service.hpp:111 #22 0x0001c344 in boost::asio::detail::service_registry::use_service at service_registry.hpp:109 #23 0x0001c491 in boost::asio::use_service at io_service.ipp:195 #24 0x0001c4d5 in boost::asio::datagram_socket_service::datagram_socket_service at datagram_socket_service.hpp:95 #25 0x0001c59e in boost::asio::detail::service_registry::use_service at service_registry.hpp:109 #26 0x0001c6eb in boost::asio::use_service at io_service.ipp:195 #27 0x0001c711 in boost::asio::basic_io_object ::basic_io_object at basic_io_object.hpp:72 #28 0x0001c783 in boost::asio::basic_socket ::basic_socket at basic_socket.hpp:108 #29 0x0001c865 in boost::asio::basic_datagram_socket ::basic_datagram_socket at basic_datagram_socket.hpp:107 #30 0x000027bc in main at main.cpp:32 This is the gdb output: (gdb) continue /Developer/SDKs/MacOSX10.5.sdk/usr/include/c++/4.0.0/debug/safe_iterator.h:127: error: attempt to copy-construct an iterator from a singular iterator. Objects involved in the operation: iterator "this" @ 0x0x100420 { type = N11__gnu_debug14_Safe_iteratorIN10__gnu_norm14_List_iteratorISt4pairIiPN5boost4asio6detail16reactor_op_queueIiE7op_baseEEEEN15__gnu_debug_def4listISB_SaISB_EEEEE (mutable iterator); state = singular; } iterator "other" @ 0x0xbfffe8a4 { type = N11__gnu_debug14_Safe_iteratorIN10__gnu_norm14_List_iteratorISt4pairIiPN5boost4asio6detail16reactor_op_queueIiE7op_baseEEEEN15__gnu_debug_def4listISB_SaISB_EEEEE (mutable iterator); state = singular; } Program received signal: “SIGABRT”. (gdb) continue Program received signal: “?”. Does someone has any idea why this example does not work on mac osx? Thank you.

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  • PyGTK: dynamic label wrapping

    - by detly
    It's a known bug/issue that a label in GTK will not dynamically resize when the parent changes. It's one of those really annoying small details, and I want to hack around it if possible. I followed the approach at 16 software, but as per the disclaimer you cannot then resize it smaller. So I attempted a trick mentioned in one of the comments (the set_size_request call in the signal callback), but this results in some sort of infinite loop (try it and see). Does anyone have any other ideas? (You can't block the signal just for the duration of the call, since as the print statements seem to indicate, the problem starts after the function is left.) The code is below. You can see what I mean if you run it and try to resize the window larger and then smaller. (If you want to see the original problem, comment out the line after "Connect to the size-allocate signal", run it, and resize the window bigger.) The Glade file ("example.glade"): <?xml version="1.0"?> <glade-interface> <!-- interface-requires gtk+ 2.16 --> <!-- interface-naming-policy project-wide --> <widget class="GtkWindow" id="window1"> <property name="visible">True</property> <signal name="destroy" handler="on_destroy"/> <child> <widget class="GtkLabel" id="label1"> <property name="visible">True</property> <property name="label" translatable="yes">In publishing and graphic design, lorem ipsum[p][1][2] is the name given to commonly used placeholder text (filler text) to demonstrate the graphic elements of a document or visual presentation, such as font, typography, and layout. The lorem ipsum text, which is typically a nonsensical list of semi-Latin words, is a hacked version of a Latin text by Cicero, with words/letters omitted and others inserted, but not proper Latin[1][2] (see below: History and discovery). The closest English translation would be "pain itself" (dolorem = pain, grief, misery, suffering; ipsum = itself).</property> <property name="wrap">True</property> </widget> </child> </widget> </glade-interface> The Python code: #!/usr/bin/python import pygtk import gobject import gtk.glade def wrapped_label_hack(gtklabel, allocation): print "In wrapped_label_hack" gtklabel.set_size_request(allocation.width, -1) # If you uncomment this, we get INFINITE LOOPING! # gtklabel.set_size_request(-1, -1) print "Leaving wrapped_label_hack" class ExampleGTK: def __init__(self, filename): self.tree = gtk.glade.XML(filename, "window1", "Example") self.id = "window1" self.tree.signal_autoconnect(self) # Connect to the size-allocate signal self.get_widget("label1").connect("size-allocate", wrapped_label_hack) def on_destroy(self, widget): self.close() def get_widget(self, id): return self.tree.get_widget(id) def close(self): window = self.get_widget(self.id) if window is not None: window.destroy() gtk.main_quit() if __name__ == "__main__": window = ExampleGTK("example.glade") gtk.main()

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  • Problem deploying Rails with Passenger to Mac OS X Leopard Server

    - by Meltemi
    I'm spinning my wheels... Apache is working and serving static html, png, etc. normally. Trying to get Passenger to serve a rails app out of www.mydomain.com/rails/ as it stands when i try to hit my app: www.mydomain.com/rails/myapp/railsclassname I get only an Apache 403 Errors. Nothing in myapp's Production Log. Apache2 access.log: "GET /rails/ HTTP/1.1" 403 1085 Apache2 error.log: [Fri Jun 11 22:44:01 2010] [error] [client 10.0.1.41] File does not exist: /Library/WebServer/wwwroot/rails/railsclassname i've even tried www.mydomain.com/myapp/classname Passenger, obviously, isn't routing requests made into my sub-folder rails/ to my rails app. not sure where i've screwed up. the most obvious thing is "Passenger doesn't seem to be running"... instructions I've followed just say to sudo apachectl graceful, which i've done (as well as stopped/started). new to this so go easy on me! Here's some info that might be helpful. happy to provide more as needed... As per some instruction @ Passenger site i've created a symlink from /Library/WebServer/myapp/rails - /Library/WebServer/rails/myapp/public myhost:myapp joe$ passenger-config --root /Library/Ruby/Gems/1.8/gems/passenger-2.2.14 myhost:myapp joe$ passenger-status ERROR: Phusion Passenger doesn't seem to be running. apollo:myapp joe$ cat /etc/httpd/httpd.conf ... <removed for brevity> ... # Copied From Passenger Installer LoadModule passenger_module /Library/Ruby/Gems/1.8/gems/passenger-2.2.14/ext/apache2/mod_passenger.so PassengerRoot /Library/Ruby/Gems/1.8/gems/passenger-2.2.14 PassengerRuby /System/Library/Frameworks/Ruby.framework/Versions/1.8/usr/bin/ruby # End Passenger Installer NameVirtualHost * <VirtualHost *:80> ServerName www.mydomain.com DocumentRoot /Library/WebServer/rails/myapp/public # <-- be sure to point to 'public'! RackBaseURI /rails <Directory /Library/WebServer/rails/myapp/public> AllowOverride all # <-- relax Apache security settings Options -MultiViews # <-- MultiViews must be turned off order allow,deny Allow from all </Directory> </VirtualHost> This last bit from NameVirtualHost on is pieced together from a number of online material i've found...as i've been desperately trying to find something/anything that'll show Passenger at least has a pulse!?!

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  • 'object' undeclared <first use in this function>

    - by Mohit Deshpande
    I am using Winchain to develop on my Windows 7 machine. Here is my code: iPhoneTest.h #import <Foundation/Foundation.h> #import <UIKit/UIKit.h> @interface iPhoneTest : UIApplication { UITextView *textview; UIView *mainView; } @end iPhoneTest.m #import "iPhoneTest.h" #import <UIKit/UIKit.h> #import <Foundation/Foundation.h> #import <CoreFoundation/CoreFoundation.h> @implementation iPhoneTest -(void)applicationDidFinishLaunching:(id)unused { UIWindow *window; struct CGRect rect = [UIHardware fullScreenApplicationContentRect]; rect.origin.x = rect.origin.y = 0.0f; window = [[UIWindow alloc] initWithContentRect: rect]; mainView = [[UIView alloc] initWithFrame: rect]; textView = [[UITextView alloc] init]; [textView setEditable:YES]; [textView setTextSize:14]; [window orderFront: self]; [window makeKey: self]; [window _setHidden: NO]; [window setContentView: mainView]; [mainView addSubview:textView]; [textView setText:@"Hello World"]; } @end main.m #import <Foundation/Foundation.h> #import <UIKit/UIKit.h> #import "iPhoneTest.h" int main(int argc, char *argv[]) { NSAutoreleasePool *pool = [[NSAutoreleasePool alloc] init]; int ret = UIApplicationMain(argc, argv, [iPhoneTest class]); [pool release]; return ret; } Makefile INFOPLIST_FILE=Info.plist SOURCES=\ main.m \ iPhoneTest.m CC=/usr/local/bin/arm-apple-darwin-gcc CFLAGS=-g -O2 -Wall LD=$(CC) LDFLAGS=-lobjc -framework CoreFoundation -framework Foundation -framework UIKit -framework LayerKit PRODUCT_NAME=iPhoneTest SRCROOT=/iphone-apps/iPhoneTest WRAPPER_NAME=$(PRODUCT_NAME).app EXECUTABLE_NAME=$(PRODUCT_NAME) SOURCES_ABS=$(addprefix $(SRCROOT)/,$(SOURCES)) INFOPLIST_ABS=$(addprefix $(SRCROOT)/,$(INFOPLIST_FILE)) OBJECTS=\ $(patsubst %.c,%.o,$(filter %.c,$(SOURCES))) \ $(patsubst %.cc,%.o,$(filter %.cc,$(SOURCES))) \ $(patsubst %.cpp,%.o,$(filter %.cpp,$(SOURCES))) \ $(patsubst %.m,%.o,$(filter %.m,$(SOURCES))) \ $(patsubst %.mm,%.o,$(filter %.mm,$(SOURCES))) OBJECTS_ABS=$(addprefix $(CONFIGURATION_TEMP_DIR)/,$(OBJECTS)) APP_ABS=$(BUILT_PRODUCTS_DIR)/$(WRAPPER_NAME) PRODUCT_ABS=$(APP_ABS)/$(EXECUTABLE_NAME) all: $(PRODUCT_ABS) $(PRODUCT_ABS): $(APP_ABS) $(OBJECTS_ABS) $(LD) $(LDFLAGS) -o $(PRODUCT_ABS) $(OBJECTS_ABS) $(APP_ABS): $(INFOPLIST_ABS) mkdir -p $(APP_ABS) cp $(INFOPLIST_ABS) $(APP_ABS)/ $(CONFIGURATION_TEMP_DIR)/%.o: $(SRCROOT)/%.m mkdir -p $(dir $@) $(CC) $(CFLAGS) $(CPPFLAGS) -c $< -o $@ clean: echo rm -f $(OBJECTS_ABS) echo rm -rf $(APP_ABS) When I try to compile it with make, I get iPhoneTest.m: In fucntion '-[iPhoneTest applicationDidFinishLaunching:]' iPhoneTest.m:15: error: 'testView' undeclared <first use in this function> iPhoneTest.m:15: error: <Each undeclared identifier is reported only once for each function it appears in> Can anyone spot the problem?

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  • Undefined symbols for C++0x lambdas?

    - by Austin Hyde
    I was just poking around into some new stuff in C++0x, when I hit a stumbling block: #include <list> #include <cstdio> using namespace std; template <typename T,typename F> void ForEach (list<T> l, F f) { for (typename list<T>::iterator it=l.begin();it!=l.end();++it) f(*it); } int main() { int arr[] = {1,2,3,4,5,6}; list<int> l (arr,arr+6); ForEach(l,[](int x){printf("%d\n",x);}); } does not compile. I get a load of undefined symbol errors. Here's make's output: i386-apple-darwin9-gcc-4.5.0 -std=c++0x -I/usr/local/include -o func main.cpp Undefined symbols: "___cxa_rethrow", referenced from: std::_List_node<int>* std::list<int, std::allocator<int> >::_M_create_node<int const&>(int const&&&) in ccPxxPwU.o "operator new(unsigned long)", referenced from: __gnu_cxx::new_allocator<std::_List_node<int> >::allocate(unsigned long, void const*) in ccPxxPwU.o "___gxx_personality_v0", referenced from: ___gxx_personality_v0$non_lazy_ptr in ccPxxPwU.o "___cxa_begin_catch", referenced from: std::_List_node<int>* std::list<int, std::allocator<int> >::_M_create_node<int const&>(int const&&&) in ccPxxPwU.o "operator delete(void*)", referenced from: __gnu_cxx::new_allocator<std::_List_node<int> >::deallocate(std::_List_node<int>*, unsigned long) in ccPxxPwU.o "___cxa_end_catch", referenced from: std::_List_node<int>* std::list<int, std::allocator<int> >::_M_create_node<int const&>(int const&&&) in ccPxxPwU.o "std::__throw_bad_alloc()", referenced from: __gnu_cxx::new_allocator<std::_List_node<int> >::allocate(unsigned long, void const*) in ccPxxPwU.o "std::_List_node_base::_M_hook(std::_List_node_base*)", referenced from: void std::list<int, std::allocator<int> >::_M_insert<int const&>(std::_List_iterator<int>, int const&&&) in ccPxxPwU.o ld: symbol(s) not found collect2: ld returned 1 exit status make: *** [func] Error 1 Why is this not working?

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  • Problems with CGI wrapper for PHP

    - by user205878
    I'm having a bugger of a time with a CGI wrapper for PHP. I know very little about CGI and PHP as CGI. Here's what I know about the system: Solaris 10 on a 386 Suhosin PHP normally running as CGI, with cgiwrap (http://cgiwrap.sourceforge.net/). I am not able to find an example wrapper.cgi on the server to look at. Shared hosting (virtual host), so I don't have access to Apache config. But the admins are not helpful. Switching hosts is not an option. Options directive cannot be overridden in .htaccess (ExecCGI, for example). .htaccess: AddHandler php-handler .php Action php-handler "/bin/test.cgi" ~/public_html/bin/test.cgi: #!/usr/bin/sh # Without these 2 lines, I get an Internal Server Error echo "Content-type: text/html" echo "" exec "/path/to/php-cgi" 'foo.php'; /bin/foo.php: <?php echo "this is foo.php!"; Output of http://mysite.com/bin/test.cgi: X-Powered-By: PHP/5.2.11 Content-type: text/html echo "Content-type: text/html" echo "" exec "/path/to//php-cgi" 'foo.php'; Output of http:/ /mysite.com/anypage.php: X-Powered-By: PHP/5.2.11 Content-type: text/html echo "Content-type: text/html" echo "" exec "/path/to//php-cgi" 'foo.php'; The things I note are: PHP is being executed, as noted by the X-Powered-By ... header. The source of /bin/test.cgi is output in the results. No matter what I put as the second argument of exec, it isn't passed to the php binary. I've tried '-i' to get phpinfo, '-v' to get the version... When I execute test.cgi via the shell, I get the expected results (the argument is passed to php, and it is reflected in the output). Any ideas about how to get this to work? UPDATE It appears that the reason the source of the test.cgi was appearing was due to errors. Anytime fatal error occurred, either within the cgi itself or with the command being executed by exec, it would cause the source of the cgi to appear. Within test.cgi, I can get the proper output with exec "/path/to/php-cgi" -h (I get the same thing as I would from CLI).

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  • What Causes Boost Asio to Crash Like This?

    - by Scott Lawson
    My program appears to run just fine most of the time, but occasionally I get a segmentation fault. boost version = 1.41.0 running on RHEL 4 compiled with GCC 3.4.6 Backtrace: #0 0x08138546 in boost::asio::detail::posix_fd_set_adapter::is_set (this=0xb74ed020, descriptor=-1) at /home/scottl/boost_1_41_0/boost/asio/detail/posix_fd_set_adapter.hpp:57 __result = -1 'ÿ' #1 0x0813e1b0 in boost::asio::detail::reactor_op_queue::perform_operations_for_descriptors (this=0x97f3b6c, descriptors=@0xb74ed020, result=@0xb74ecec8) at /home/scottl/boost_1_41_0/boost/asio/detail/reactor_op_queue.hpp:204 op_iter = {_M_node = 0xb4169aa0} i = {_M_node = 0x97f3b74} #2 0x081382ca in boost::asio::detail::select_reactor::run (this=0x97f3b08, block=true) at /home/scottl/boost_1_41_0/boost/asio/detail/select_reactor.hpp:388 read_fds = {fd_set_ = {fds_bits = {16, 0 }}, max_descriptor_ = 65} write_fds = {fd_set_ = {fds_bits = {0 }}, max_descriptor_ = -1} retval = 1 lock = { = {}, mutex_ = @0x97f3b1c, locked_ = true} except_fds = {fd_set_ = {fds_bits = {0 }}, max_descriptor_ = -1} max_fd = 65 tv_buf = {tv_sec = 0, tv_usec = 710000} tv = (timeval *) 0xb74ecf88 ec = {m_val = 0, m_cat = 0x81f2c24} sb = { = {}, blocked_ = true, old_mask_ = {__val = {0, 0, 134590223, 3075395548, 3075395548, 3075395464, 134729792, 3075395360, 135890240, 3075395368, 134593920, 3075395544, 135890240, 3075395384, 134599542, 3020998404, 135890240, 3075395400, 134614095, 3075395544, 4, 3075395416, 134548135, 3021172996, 4294967295, 3075395432, 134692921, 3075395504, 0, 3075395448, 134548107, 3021172992}}} #3 0x0812eb45 in boost::asio::detail::task_io_service ::do_one (this=0x97f3a70, lock=@0xb74ed230, this_idle_thread=0xb74ed240, ec=@0xb74ed2c0) at /home/scottl/boost_1_41_0/boost/asio/detail/task_io_service.hpp:260 more_handlers = false c = {lock_ = @0xb74ed230, task_io_service_ = @0x97f3a70} h = (boost::asio::detail::handler_queue::handler *) 0x97f3aa0 polling = false task_has_run = true #4 0x0812765f in boost::asio::detail::task_io_service ::run (this=0x97f3a70, ec=@0xb74ed2c0) at /home/scottl/boost_1_41_0/boost/asio/detail/task_io_service.hpp:103 ctx = { = {}, owner_ = 0x97f3a70, next_ = 0x0} this_idle_thread = {wakeup_event = { = {}, cond_ = {__c_lock = { __status = 0, __spinlock = 22446}, __c_waiting = 0x2bd7, __padding = "\000\000\000\000×+\000\000\000\000\000\000×+\000\000\000\000\000\000\204:\177\t\000\000\000", __align = 0}, signalled_ = true}, next = 0x0} lock = { = {}, mutex_ = @0x97f3a84, locked_ = false} n = 11420 #5 0x08125e99 in boost::asio::io_service::run (this=0x97ebbcc) at /home/scottl/boost_1_41_0/boost/asio/impl/io_service.ipp:58 ec = {m_val = 0, m_cat = 0x81f2c24} s = 8 #6 0x08154424 in boost::_mfi::mf0::operator() (this=0x9800870, p=0x97ebbcc) at /home/scottl/boost_1_41_0/boost/bind/mem_fn_template.hpp:49 No locals. #7 0x08154331 in boost::_bi::list1 ::operator(), boost::_bi::list0 (this=0x9800878, f=@0x9800870, a=@0xb74ed337) at /home/scottl/boost_1_41_0/boost/bind/bind.hpp:236 No locals. #8 0x081541e5 in boost::_bi::bind_t, boost::_bi::list1 ::operator() (this=0x9800870) at /home/scottl/boost_1_41_0/boost/bind/bind_template.hpp:20 a = {} #9 0x08154075 in boost::detail::thread_data, boost::_bi::list1 ::run (this=0x98007a0) at /home/scottl/boost_1_41_0/boost/thread/detail/thread.hpp:56 No locals. #10 0x0816fefd in thread_proxy () at /usr/lib/gcc/i386-redhat-linux/3.4.6/../../../../include/c++/3.4.6/bits/locale_facets.tcc:2443 __ioinit = {static _S_refcount = , static _S_synced_with_stdio = } ---Type to continue, or q to quit--- typeinfo for common::RuntimeException = {} typeinfo name for common::RuntimeException = "N6common16RuntimeExceptionE" #11 0x00af23cc in start_thread () from /lib/tls/libpthread.so.0 No symbol table info available. #12 0x00a5c96e in __init_misc () from /lib/tls/libc.so.6 No symbol table info available.

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