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  • conversion of DNA to Protein - c structure issue

    - by sam
    I am working on conversion of DNA sequence to Protein sequence. I had completed all program only one error I found there is of structure. dna_codon is a structure and I am iterating over it.In first iteration it shows proper values of structure but from next iteration, it dont show the proper value stored in structure. Its a small error so do not think that I havnt done anything and downvote. I am stucked here because I am new in c for structures. CODE : #include <stdio.h> #include<string.h> void main() { int i, len; char short_codons[20]; char short_slc[1000]; char sequence[1000]; struct codons { char amino_acid[20], slc[20], dna_codon[40]; }; struct codons c1 [20]= { {"Isoleucine", "I", "ATT, ATC, ATA"}, {"Leucine", "L", "CTT, CTC, CTA, CTG, TTA, TTG"}, {"Valine", "V", "GTT, GTC, GTA, GTG"}, {"Phenylalanine", "F", "TTT, TTC"}, {"Methionine", "M", "ATG"}, {"Cysteine", "C", "TGT, TGC"}, {"Alanine", "A", "GCT, GCC, GCA, GCG"}, {"Proline", "P", "CCT, CCC, CCA,CCG "}, {"Threonine", "T", "ACT, ACC, ACA, ACG"}, {"Serine", "S", "TCT, TCC, TCA, TCG, AGT, AGC"}, {"Tyrosine", "Y", "TAT, TAC"}, {"Tryptophan", "W", "TGG"}, {"Glutamine", "Q", "CAA, CAG"}, {"Aspargine","N" "AAT, AAC"}, {"Histidine", "H", "CAT, CAC"}, {"Glutamic acid", "E", "GAA, GAG"}, {"Aspartic acid", "D", "GAT, GAC"}, {"Lysine", "K", "AAA, AAG"}, {"Arginine", "R", "CGT, CGC, CGA, CGG, AGA, AGG"}, {"Stop codons", "Stop", "AA, TAG, TGA"} }; int count = 0; printf("Enter the sequence: "); gets(sequence); char *input_string = sequence; char *tmp_str = input_string; int k; char *pch; while (*input_string != '\0') { char string_3l[4] = {'\0'}; strncpy(string_3l, input_string, 3); printf("\n-----------%s & %s----------", string_3l, tmp_str ); for(k=0;k<20;k++) { //printf("@REAL - %s", c1[0].dna_codon); printf("@ %s", c1[k].dna_codon); int x; x = c1[k].dna_codon; pch = strtok(x, ","); while (pch != NULL) { printf("\n%d : %s with %s", k, string_3l, pch); count=strcmp(string_3l, pch); if(count==0) { strcat(short_slc, c1[k].slc); printf("\n==>%s", short_slc); } pch = strtok (NULL, " ,.-"); } } input_string = input_string+3; } printf("\nProtien sequence is : %s\n", short_slc); } INPUT : TAGTAG OUTPUT : If you see output of printf("\n-----------%s & %s----------", string_3l, tmp_str ); in both iterations, we found that values defined in structure are reduced. I want to know why structure reduces it or its my mistake? because I am stucked here

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  • javascript div positioning

    - by sam
    hello folks., please suggest me a solution.. i am using this script to display an image as popup on mouseover.. the difficulty i am facing is that it is not positioning well in different monitor.. it must be something to do with pixcel.. function LargeImage(obj,e) { var imgbtn=document.getElementById('<%=imgbtn1.ClientID%'); imgbtn.src=obj; document.getElementById('imgbox').style.visibility="visible"; document.getElementById('imgbox').style.position="absolute"; document.getElementById('imgbox').style.left=e.clientX-150 + "px"; document.getElementById('imgbox').style.top=225 +"px"; //225 +"px"; } thank you

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  • How to specify an association relation using declarative base

    - by sam
    I have been trying to create an association relation between two tables, intake and module . Each intake has a one-to-many relationship with the modules. However there is a coursework assigned to each module, and each coursework has a duedate which is unique to each intake. I tried this but it didnt work: intake_modules_table = Table('tg_intakemodules',metadata, Column('intake_id',Integer,ForeignKey('tg_intake.intake_id', onupdate="CASCADE",ondelete="CASCADE")), Column('module_id',Integer,ForeignKey('tg_module.module_id', onupdate ="CASCADE",ondelete="CASCADE")), Column('dueddate', Unicode(16)) ) class Intake(DeclarativeBase): __tablename__ = 'tg_intake' #{ Columns intake_id = Column(Integer, autoincrement=True, primary_key=True) code = Column(Unicode(16)) commencement = Column(DateTime) completion = Column(DateTime) #{ Special methods def __repr__(self): return '"%s"' %self.code def __unicode__(self): return self.code #} class Module(DeclarativeBase): __tablename__ ='tg_module' #{ Columns module_id = Column(Integer, autoincrement=True, primary_key=True) code = Column(Unicode(16)) title = Column(Unicode(30)) #{ relations intakes = relation('Intake', secondary=intake_modules_table, backref='modules') #{ Special methods def __repr__(self): return '"%s"'%self.title def __unicode__(self): return '"%s"'%self.title #} When I do this the column duedate specified in the intake_module_table is not created. Please some help will be appreciated here. thanks in advance

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  • ruby, rails, railscasts example I messed up

    - by Sam
    If you saw the railscasts on nested forms this is the helper method to create links dynamically. However, after I upgraded to ruby 1.9.2 and rails 3 this doesn't work and I have now idea why. def link_to_add_fields(name, f, association) new_object = f.object.class.reflect_on_association(association).klass.new fields = f.fields_for(association, new_object, :child_index => "new_#{association}") do |builder| render(association.to_s.singularize + "_fields", :f => builder) end link_to_function(name, h("add_fields(this, \"#{association}\", \"#{escape_javascript(fields)}\")")) end here is the javascript function add_fields(link, association, content) { var new_id = new Date().getTime(); var regexp = new RegExp("new_" + association, "g") $(link).up().insert({ before: content.replace(regexp, new_id) }); } When I view source this is how the link is getting rendered: <p><a href="#" onclick="add_fields(this, &quot;dimensions&quot;, &quot;&quot;); return false;">Add Dimension</a></p> so &quot;&quot; is not the correct information to build a new template and something is going on with how the string for fields is getting set. such as fields= f.fields_for

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  • PayPal return URL

    - by Sam
    Here's the code for my Paypal button: <form action="https://www.sandbox.paypal.com/cgi-bin/webscr" method="post"> <input type="hidden" name="cmd" value="_xclick"> <input type="hidden" name="business" value="[email protected]"> <input type="hidden" name="lc" value="GB"> <input type="hidden" name="button_subtype" value="products"> <input type="hidden" name="no_note" value="1"> <input type="hidden" name="no_shipping" value="1"> <input type="hidden" name="rm" value="0"> <input type="hidden" name="return" value="http://www.example.com"> <input type="hidden" name="item_name" value="My Item"> <input type="hidden" name="amount" value="25.00"> <input type="hidden" name="currency_code" value="GBP"> <input type="hidden" name="bn" value="PP-BuyNowBF:proceed_btn.gif:NonHosted"> <input type="hidden" name="item_number" value="4BD9569402CDE"> <input type="image" src="http://www.example.com/image.gif" border="0" name="submit" alt="PayPal - The safer, easier way to pay online."> <img alt="" border="0" src="https://www.paypal.com/en_GB/i/scr/pixel.gif" width="1" height="1"> </form> Is it possible to add the item_number to the return URL? For example, after completing the payment within PayPal the user gets sent back to http://www.example.com?item_number=4BD9569402CDE

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  • modalViewController present when app opens

    - by Sam Jarman
    Hey im trying to display a modal view controller as soon as my tab bar controller app opens. There is something wrong with the code below, and im 99% sure its the code for this. what do i put for the thing im calling it on? [self presentModalViewController:promt animated:YES]; - (BOOL)application:(UIApplication *)application didFinishLaunchingWithOptions:(NSDictionary *)launchOptions { // Override point for customization after app launch. //Displays the password prompt modally PasswordPromViewController *promt = [[PasswordPromViewController alloc] initWithNibName:@"PasswordPromViewController" bundle:nil]; promt.modalTransitionStyle = UIModalTransitionStyleCrossDissolve; [self presentModalViewController:promt animated:YES]; [promt release]; return YES; } any ideas would be helful! Cheers

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  • why developping ASP.NET - MVC?

    - by sam
    Hi Guys, I am new to web development, I am coding some ASP.NET, I checked a lot of examples using MVC in ASP.NET, But I am looking for verbal answers from senior programmers, about why using MVC? can U as seniors and team leaders show me the benefits?? and why not keeping using asp.net webforms? thanks

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  • What good technology/programming vodcasts are out there?

    - by Sam Saffron
    I'm trying to round up a list of programming/technology related Vodcasts. Related Question: What good technology podcasts are out there? Here I am looking for podcasts which include Video content like: dnr tv : http://www.dnrtv.com/ Channel 9 : http://channel9.msdn.com/ Dimecasts : http://dimecasts.net/ Railscasts : http://railscasts.com/ Zendcasts : http://www.zendcasts.com/ Net Tuts : http://net.tutsplus.com/category/videos/screencasts/ Feel free to edit this post, and improve the list. (with perhaps university lectures in RSS formats etc etc... ) For the voting to have even a slight amount of meaning please include only one vodcast per post. If this is a dupe, let me know and ill delete it.

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  • Changing python interpreter for emacs

    - by sam
    Emacs uses an older version of python(2.3) i have for the default python mode, is there a way for me to tell emacs to use the newer version that i have in my home directory? btw I'm using a red hat distro and dont have root privileges.

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  • MVC DateTime binding with incorrect date format

    - by Sam Wessel
    Asp.net-MVC now allows for implicit binding of DateTime objects. I have an action along the lines of public ActionResult DoSomething(DateTime startDate) { ... } This successfully converts a string from an ajax call into a DateTime. However, we use the date format dd/MM/yyyy; MVC is converting to MM/dd/yyyy. For example, submitting a call to the action with a string '09/02/2009' results in a DateTime of '02/09/2009 00:00:00', or September 2nd in our local settings. I don't want to roll my own model binder for the sake of a date format. But it seems needless to have to change the action to accept a string and then use DateTime.Parse if MVC is capable of doing this for me. Is there any way to alter the date format used in the default model binder for DateTime? Shouldn't the default model binder use your localisation settings anyway?

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  • SQL Server - Query Short-Circuiting?

    - by Sam Schutte
    Do T-SQL queries in SQL Server support short-circuiting? For instance, I have a situation where I have two database and I'm comparing data between the two tables to match and copy some info across. In one table, the "ID" field will always have leading zeros (such as "000000001234"), and in the other table, the ID field may or may not have leading zeros (might be "000000001234" or "1234"). So my query to match the two is something like: select * from table1 where table1.ID LIKE '%1234' To speed things up, I'm thinking of adding an OR before the like that just says: table1.ID = table2.ID to handle the case where both ID's have the padded zeros and are equal. Will doing so speed up the query by matching items on the "=" and not evaluating the LIKE for every single row (will it short circuit and skip the LIKE)?

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  • Ozeki Server not recieving SMS messages

    - by Sam Thompson
    I'm trying to get Ozeki to recieve SMS messages from my GSM Nokia E63 - it will send messages fine but wont recieve them. I am also trying to get a PHP/HTML form to generate messages, but the example on the Ozeki website won't work! <?php if ($submit=="Send") { $url='http://localhost:9333/ozeki?'; $url.="action=sendMessage"; $url.="&login=admin"; $url.="&password=abc123"; $url.="&recepient=".urlencode($recepient); $url.="&messageData=".urlencode($message); $url.="&sender=".urlencode($sender); file($url); } ?> <html> <form method=post action='index.php'> <table border=0> <tr> <td>Sender</td><td><input type='text' name='sender'></td> </tr> <tr> <td>Recepient</td><td><input type='text' name='recepient'></td> </tr> <tr> <td>Message</td><td><input type='text' name='message'</td> </tr> <tr> <td colspan=2><input type=submit name=submit value=Send> </form> </tr> </table> </form> </html> Any help?!

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  • Java unchecked method invocation

    - by Sam
    I'm trying to setup a multithreaded application using SQLite4java, and everything is working fine. However, according to the getting started tutorial I am meant to create an object of type "object" and in order to return a value of null (due to use of generic types). Here is the suggested code: queue.execute(new SQLiteJob<Object>() { protected Object job(SQLiteConnection connection) throws SQLiteException { // this method is called from database thread and passed the connection connection.exec(...); return null; } }); Source The following example code I created produces the same error: error: test.java:9: warning: [unchecked] unchecked method invocation: <T,J>execute(J) in com.almworks.sqlite4java.SQLiteQueue is applied to (query<java.lang.Integer>) queue.execute(new query<Integer>()); test.java: import com.almworks.sqlite4java.*; import java.util.ArrayList; import java.io.File; class test{ public static void main(String[] args){ File f = new File("file.db"); SQLiteQueue queue = new SQLiteQueue(f); queue.execute(new query<Integer>()); } } query.java: import com.almworks.sqlite4java.SQLiteException; import com.almworks.sqlite4java.SQLiteJob; import com.almworks.sqlite4java.SQLiteConnection; import com.almworks.sqlite4java.SQLiteStatement; import java.util.ArrayList; class query<T> extends SQLiteJob{ protected ArrayList<Integer> job(SQLiteConnection connection) throws SQLiteException{ ArrayList<Integer> ints = new ArrayList<Integer>(); //DB Stuff return ints; } } I have read a lot about how this particular message appears when people fail to specify a type for an ArrayList. However, I am not attempting to cast the object or do anything with it. It is merely a mechanism implemented by the library developers in order to return a null. I do not believe this to be an issue relating directly to the library, which is why I'm asking this on StackOverflow. I believe it all comes down to my lack of experience with generic types. I've already spent a few hours on this and don't feel like I am getting anywhere. How do I stop the warning?

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  • Set maven to use archiva repositories WITHOUT using activeByDefault?

    - by Sam Levin
    I am very close to finally having a working setup with archiva and maven. The last thing that's really boggling me, is how to set up my internal and snapshot repositories - without using a profile which contains activeByDefault set to true. I am using a SUPER super pom - a company-wide pom which contains distributionManagement information for releases. I was thinking that I could specify the repositories in this pom, and configure the authentication settings in settings.xml? Can I use repositories tag without a profile? There should be no "profile" for my internal and snapshot repositories, as they will never change... What I'm trying to steer clear from, is using a "default" profile, which is active all the time. I hear activeByDefault is NOT a best practice and I don't intend to use it. With that said, how should I go about doing this? My internal repo is a mirror of the maven central repo, so I would like to lock down my developers to ONLY use our internal artifact server. Remember - I do NOT want a profile with activeByDefault set to true. I cannot stress this enough! Should I use Maven mirrors? Should I "add" additional repositories? If I take the repositories tag instead of the mirrors tag, will maven force builds to use ONLY my archiva settings, instead of the default maven central? Or is what I seek to accomplish able to be done using only the mirrors tag in maven? I know how to configure repo credentials when using repositories tag, but not with mirrors. How is this done? Is providing credentials for anything in mirrors tags the same as for anything in repositories tags? Am I missing something obvious? I've had it up to here with getting things up and running using maven. I know it will be worthwhile in the end, but it is surely causing me a ton of aggravation and resources seem to be sparse. Either that, or people are content using it however they please without regard to best-practices. Thank you

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  • jqGrid local date manipulation; problem with row ids when deleting and adding new rows

    - by Sam
    I'm using jqGrid as a client side grid input, allowing the user to input multiple records before POSTing all the data back at once. I'm having a problem where if the user has added a few records (say 3 ) the id's for the records will be 1,2,3. if the user deletes record 2, you're left with 1 and 3 for the id of the records. When the user now adds a new records, jqGrid assigns that records the id 3 again since it just seems to count the total records and increments it by one for the new record. This causes problems when selecting rows as now the row id's are 1, 3 and 3. Does anyone know how to access the row ids of records as I could probably use the afterSubmit event and reassign the row id's increasing from 1. ( so after i delete row id 2, this will set the other row id's to 1 and 2) Any other suggestions to solve this problem? Thanks

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  • Do you continue development in a branch or in the trunk?

    - by Sam McAfee
    Suppose you're developing a software product that has periodic releases. What are the best practices with regard to branching and merging? Slicing off periodic release branches to the public (or whomever your customer is) and then continuing development on the trunk, or considering the trunk the stable version, tagging it as a release periodically, and doing your experimental work in branches. What do folks think is the trunk considered "gold" or considered a "sand box"?

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  • sudo taking long time

    - by Sam
    On a Ubuntu 9 64bit Linux machine, sudo takes longer time to start. "sudo echo hi" takes 2-3 minutes. strace on sudo tells poll("/etc/pam.d/system-auth", POLLIN) timesout after 5 seconds and there are multiple calls(may be a loop) to same system call (which causes 2-3min delay). Any idea why sudo has to wait for /etc/pam.d/system-auth? Any tunable to make sudo to timeout faster? Thanks Samuel

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  • Set top level directory to be handled by Perl?

    - by Sam Lee
    I have an Apache server set up to use mod_perl. I have it set up to handle all requests using a Perl module MyModule. Here is part of my httpd.conf: LoadModule perl_module modules/mod_perl.so <Directory /> Order Deny,Allow Allow from all </Directory> PerlModule MyModule <Location /> SetHandler modperl PerlResponseHandler MyModule </Location> This seems to work fine, except top level directory (ie. www.mysite.com/) is not being sent to MyModule. What's going wrong?

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  • Inheritance Problem in Perl OOP

    - by Sam
    Hello, I have a sub class that calls a method from a super class. and the method in the super class use a method that is defined in the super class as asbstract(not really abstract) but implemented in the sub class. for example: package BaseClass; sub new { } sub method1 { return someAbstractMethod(); } sub someAbtsractMethod { die "oops, this is an abstract method that should be implemented in a subclass" ; } 1; package SubClass; sub new { } sub someAbtsractMethod { print "now we implement the asbtract method"; } 1; now when I do: $sub = new SubClass(); $sub-method1(); It calls the abstract message and i get the specified error message. if I took off the abstractmethod from the super class and just leave the implementation in the subclass, It does not recognize the method and I get subroutine abstractmethod not found error.

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  • Eclipse antRunner command line build has wrong dependency build order

    - by Sam Jones
    My team's Eclipse RCP app builds fine from the Eclipse IDE. When I try to build it from the command line, using the antRunner application, it builds the plugins out of order -- a plugin builds before it's dependencies are built, and so can't resolve some of the needed classes. Where should I look to fix this? As far as I can tell, the dependencies are set up correctly (a feature that depends on a plugin that depends on another plugin). I have my build.properties and folder structure set up as specified here. Is there anything else I should look at?

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  • Invoke method in another class

    - by Sam
    I have two view controllers (viewControllerA and viewControllerB) with their own views. When the user touches a button in the view of viewControllerA, I am able to load the view of the viewControllerB. However, I don't know how to invoke a method in viewControllerB's class!

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